Gcaud2301.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2301.t1
Unique NameGcaud2301.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:2..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2301Gcaud2301Gracilaria caudata M_176_S67 malegeneNODE_838_length_17196_cov_5.011166 2..806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2301.t1.CDS1Gcaud2301.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 2..806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2301.t1.exon1Gcaud2301.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 2..806 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2301.t1.start1Gcaud2301.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_838_length_17196_cov_5.011166 804..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2301.t1Gcaud2301.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_838_length_17196_cov_5.011166 2..806 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2301.t1 ID=Gcaud2301.t1|Name=Gcaud2301.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=269bp
MPRLRLDSYMAQRLQKPLSCMTLPSLFWDYIEFSECLLIWVLEFTSFAGL
FVFFCAVAFVDVIRYSLGLKTSGKIKQVPLQPEEVWLNWSVVFAAQGLQQ
WISSFKVAPDPDDDKGPDHGDTKDIREQRSAYFASEVLASAVMQLWPELS
HSSSPSTSPFFWNLWNEDSNMALGRLLEDELLRSAVLNGRGLLFGVFHTL
KRLTQRRRNRVSYRIYHRHLSSVKACLSIRDEFCAQIDDFDVEKLEWLTI
ILNLGSVALQHPMNIHPNX
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spliced messenger RNA

>Gcaud2301.t1 ID=Gcaud2301.t1|Name=Gcaud2301.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=805bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2..806- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGATTAAGACTGGACTCATACATGGCACAAAGGCTACAGAAGCC
TTTGTCATGTATGACGTTGCCATCGCTGTTTTGGGACTACATAGAGTTTT
CCGAATGTCTTCTTATTTGGGTCCTCGAATTCACTTCTTTTGCAGGCTTG
TTCGTCTTTTTCTGCGCAGTTGCATTCGTCGATGTCATTCGTTACTCCCT
CGGACTAAAGACGAGCGGAAAAATCAAACAAGTCCCCCTGCAACCAGAAG
AAGTCTGGTTGAATTGGTCCGTTGTATTTGCTGCCCAAGGTCTGCAGCAA
TGGATCTCTTCGTTTAAAGTTGCGCCGGATCCTGACGACGATAAAGGTCC
TGATCATGGTGATACTAAAGATATACGTGAGCAACGATCTGCTTATTTCG
CATCGGAAGTCCTAGCTTCCGCTGTCATGCAACTATGGCCCGAACTTTCT
CATTCTTCTTCACCGTCGACGAGCCCGTTCTTCTGGAACTTGTGGAATGA
AGACAGTAACATGGCCCTGGGTCGGCTTCTTGAAGATGAACTTCTAAGGA
GTGCAGTGCTTAATGGTAGAGGTCTACTGTTCGGAGTTTTTCACACCCTG
AAGAGATTGACTCAGAGACGCAGAAATCGCGTAAGTTATCGCATCTATCA
TCGACATCTCAGTAGTGTCAAGGCATGTCTATCTATCAGAGATGAATTCT
GTGCCCAAATCGATGATTTCGATGTGGAGAAGCTCGAATGGTTGACGATA
ATTCTCAACCTTGGGAGTGTGGCTTTGCAACATCCAATGAACATACACCC
CAACA
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protein sequence of Gcaud2301.t1

>Gcaud2301.t1 ID=Gcaud2301.t1|Name=Gcaud2301.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=269bp
MPRLRLDSYMAQRLQKPLSCMTLPSLFWDYIEFSECLLIWVLEFTSFAGL
FVFFCAVAFVDVIRYSLGLKTSGKIKQVPLQPEEVWLNWSVVFAAQGLQQ
WISSFKVAPDPDDDKGPDHGDTKDIREQRSAYFASEVLASAVMQLWPELS
HSSSPSTSPFFWNLWNEDSNMALGRLLEDELLRSAVLNGRGLLFGVFHTL
KRLTQRRRNRVSYRIYHRHLSSVKACLSIRDEFCAQIDDFDVEKLEWLTI
ILNLGSVALQHPMNIHPNX
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mRNA from alignment at NODE_838_length_17196_cov_5.011166:2..806-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2301.t1 ID=Gcaud2301.t1|Name=Gcaud2301.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=805bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2..806- (Gracilaria caudata M_176_S67 male)
ATGCCCAGATTAAGACTGGACTCATACATGGCACAAAGGCTACAGAAGCC
TTTGTCATGTATGACGTTGCCATCGCTGTTTTGGGACTACATAGAGTTTT
CCGAATGTCTTCTTATTTGGGTCCTCGAATTCACTTCTTTTGCAGGCTTG
TTCGTCTTTTTCTGCGCAGTTGCATTCGTCGATGTCATTCGTTACTCCCT
CGGACTAAAGACGAGCGGAAAAATCAAACAAGTCCCCCTGCAACCAGAAG
AAGTCTGGTTGAATTGGTCCGTTGTATTTGCTGCCCAAGGTCTGCAGCAA
TGGATCTCTTCGTTTAAAGTTGCGCCGGATCCTGACGACGATAAAGGTCC
TGATCATGGTGATACTAAAGATATACGTGAGCAACGATCTGCTTATTTCG
CATCGGAAGTCCTAGCTTCCGCTGTCATGCAACTATGGCCCGAACTTTCT
CATTCTTCTTCACCGTCGACGAGCCCGTTCTTCTGGAACTTGTGGAATGA
AGACAGTAACATGGCCCTGGGTCGGCTTCTTGAAGATGAACTTCTAAGGA
GTGCAGTGCTTAATGGTAGAGGTCTACTGTTCGGAGTTTTTCACACCCTG
AAGAGATTGACTCAGAGACGCAGAAATCGCGTAAGTTATCGCATCTATCA
TCGACATCTCAGTAGTGTCAAGGCATGTCTATCTATCAGAGATGAATTCT
GTGCCCAAATCGATGATTTCGATGTGGAGAAGCTCGAATGGTTGACGATA
ATTCTCAACCTTGGGAGTGTGGCTTTGCAACATCCAATGAACATACACCC
CAACA
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Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:2..806-

>Gcaud2301.t1 ID=Gcaud2301.t1|Name=Gcaud2301.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=805bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:2..806- (Gracilaria caudata M_176_S67 male)
ATGCCCAGATTAAGACTGGACTCATACATGGCACAAAGGCTACAGAAGCC
TTTGTCATGTATGACGTTGCCATCGCTGTTTTGGGACTACATAGAGTTTT
CCGAATGTCTTCTTATTTGGGTCCTCGAATTCACTTCTTTTGCAGGCTTG
TTCGTCTTTTTCTGCGCAGTTGCATTCGTCGATGTCATTCGTTACTCCCT
CGGACTAAAGACGAGCGGAAAAATCAAACAAGTCCCCCTGCAACCAGAAG
AAGTCTGGTTGAATTGGTCCGTTGTATTTGCTGCCCAAGGTCTGCAGCAA
TGGATCTCTTCGTTTAAAGTTGCGCCGGATCCTGACGACGATAAAGGTCC
TGATCATGGTGATACTAAAGATATACGTGAGCAACGATCTGCTTATTTCG
CATCGGAAGTCCTAGCTTCCGCTGTCATGCAACTATGGCCCGAACTTTCT
CATTCTTCTTCACCGTCGACGAGCCCGTTCTTCTGGAACTTGTGGAATGA
AGACAGTAACATGGCCCTGGGTCGGCTTCTTGAAGATGAACTTCTAAGGA
GTGCAGTGCTTAATGGTAGAGGTCTACTGTTCGGAGTTTTTCACACCCTG
AAGAGATTGACTCAGAGACGCAGAAATCGCGTAAGTTATCGCATCTATCA
TCGACATCTCAGTAGTGTCAAGGCATGTCTATCTATCAGAGATGAATTCT
GTGCCCAAATCGATGATTTCGATGTGGAGAAGCTCGAATGGTTGACGATA
ATTCTCAACCTTGGGAGTGTGGCTTTGCAACATCCAATGAACATACACCC
CAACA
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