Gcaud2293.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2293.t1
Unique NameGcaud2293.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_220_length_36054_cov_4.510163contigNODE_220_length_36054_cov_4.510163:25278..26153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2293Gcaud2293Gracilaria caudata M_176_S67 malegeneNODE_220_length_36054_cov_4.510163 25278..26153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2293.t1Gcaud2293.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_220_length_36054_cov_4.510163 25278..26153 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2293.t1.stop1Gcaud2293.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_220_length_36054_cov_4.510163 25278..25280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2293.t1.CDS1Gcaud2293.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 25278..25281 -
Gcaud2293.t1.CDS2Gcaud2293.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 25360..25388 -
Gcaud2293.t1.CDS3Gcaud2293.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 25746..26153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2293.t1.exon1Gcaud2293.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 25278..25281 -
Gcaud2293.t1.exon2Gcaud2293.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 25360..25388 -
Gcaud2293.t1.exon3Gcaud2293.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 25746..26153 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2293.t1.intron1Gcaud2293.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_220_length_36054_cov_4.510163 25282..25359 -
Gcaud2293.t1.intron2Gcaud2293.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_220_length_36054_cov_4.510163 25389..25745 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2293.t1.start1Gcaud2293.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_220_length_36054_cov_4.510163 26151..26153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2293.t1 ID=Gcaud2293.t1|Name=Gcaud2293.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=147bp
MENQVRNLNKMCNRLNATEFTRQTTPILHQCVNDAVLSEEEKKDTDPFTF
DKETCSSRILRLDDLNPGLIAWICDCKVSEFFEVAPGAKGYSVTGNATEV
AQELDDMQTPMSQGQGPLTPKDQIFRTLLLWKGSCRPTNQNFQMHK*
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spliced messenger RNA

>Gcaud2293.t1 ID=Gcaud2293.t1|Name=Gcaud2293.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:25278..26153- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACCAAGTCCGTAATCTTAACAAGATGTGCAACCGTCTTAACGC
CACTGAGTTCACTCGTCAGACCACACCAATTCTCCATCAATGCGTGAACG
ACGCTGTTCTATCTGAAGAGGAAAAGAAGGATACGGATCCGTTCACCTTC
GACAAAGAGACCTGCTCCTCTAGGATTCTTCGGCTGGATGATTTGAATCC
GGGTCTCATTGCATGGATTTGCGACTGTAAGGTGTCTGAGTTCTTTGAGG
TGGCGCCTGGAGCGAAGGGGTATTCCGTAACGGGCAATGCAACGGAAGTA
GCTCAGGAGCTCGACGATATGCAAACTCCGATGAGCCAGGGGCAAGGACC
CCTGACCCCGAAGGACCAGATCTTCCGCACGCTACTTTTGTGGAAAGGTT
CTTGCCGACCAACGAATCAGAACTTCCAGATGCACAAGTAA
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protein sequence of Gcaud2293.t1

>Gcaud2293.t1 ID=Gcaud2293.t1|Name=Gcaud2293.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=147bp
MENQVRNLNKMCNRLNATEFTRQTTPILHQCVNDAVLSEEEKKDTDPFTF
DKETCSSRILRLDDLNPGLIAWICDCKVSEFFEVAPGAKGYSVTGNATEV
AQELDDMQTPMSQGQGPLTPKDQIFRTLLLWKGSCRPTNQNFQMHK*
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mRNA from alignment at NODE_220_length_36054_cov_4.510163:25278..26153-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2293.t1 ID=Gcaud2293.t1|Name=Gcaud2293.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=876bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:25278..26153- (Gracilaria caudata M_176_S67 male)
ATGGAGAACCAAGTCCGTAATCTTAACAAGATGTGCAACCGTCTTAACGC
CACTGAGTTCACTCGTCAGACCACACCAATTCTCCATCAATGCGTGAACG
ACGCTGTTCTATCTGAAGAGGAAAAGAAGGATACGGATCCGTTCACCTTC
GACAAAGAGACCTGCTCCTCTAGGATTCTTCGGCTGGATGATTTGAATCC
GGGTCTCATTGCATGGATTTGCGACTGTAAGGTGTCTGAGTTCTTTGAGG
TGGCGCCTGGAGCGAAGGGGTATTCCGTAACGGGCAATGCAACGGAAGTA
GCTCAGGAGCTCGACGATATGCAAACTCCGATGAGCCAGGGGCAAGGACC
CCTGACCCCGAAGGACCAGATCTTCCGCACGCTACTTTTGTGGAAAGGTT
CTTGCCGAGTAAACCTACAGACACGCACAAGATCAAGTTATCATATCCCC
GTTTTCATCACCCTGTGCCCAGGCTTTAAATCTCAGTAAGGGTTAGGATT
GTTTGACGGGGAGAGGAATCCCGTCCAACCCTTCGTCGTTGGCAGTTTAC
TCTTCGTACGAAGGTAGGAAACCCTCTTACCTTCGAAGGTAGATACCATC
CGTCATCCGTCACCGCACATTGTGCGGTGACGGATGGATGCCATTGACGA
CATACTAGACGCAGTGAGGAAACACTTGCGTCGCATAGCCGATGAAAACA
TACAGCTGGCAGGGGTGACTGAGAGTTCATCGGCGAATCGTTTTACGGTT
TTGTTCTAATTATAGCCAACGAATCAGAACTTCCAGATGCACAAGTACGT
TGTAACTTACAGTAGCTTCCTACTAAGAAGCTATTACATCTAACAAAGTG
CATAATATGCTCTGTAATACAGGTAA
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Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:25278..26153-

>Gcaud2293.t1 ID=Gcaud2293.t1|Name=Gcaud2293.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=441bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:25278..26153- (Gracilaria caudata M_176_S67 male)
ATGGAGAACCAAGTCCGTAATCTTAACAAGATGTGCAACCGTCTTAACGC
CACTGAGTTCACTCGTCAGACCACACCAATTCTCCATCAATGCGTGAACG
ACGCTGTTCTATCTGAAGAGGAAAAGAAGGATACGGATCCGTTCACCTTC
GACAAAGAGACCTGCTCCTCTAGGATTCTTCGGCTGGATGATTTGAATCC
GGGTCTCATTGCATGGATTTGCGACTGTAAGGTGTCTGAGTTCTTTGAGG
TGGCGCCTGGAGCGAAGGGGTATTCCGTAACGGGCAATGCAACGGAAGTA
GCTCAGGAGCTCGACGATATGCAAACTCCGATGAGCCAGGGGCAAGGACC
CCTGACCCCGAAGGACCAGATCTTCCGCACGCTACTTTTGTGGAAAGGTT
CTTGCCGACCAACGAATCAGAACTTCCAGATGCACAAGTAA
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