Gcaud2291.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2291.t1
Unique Name	Gcaud2291.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	462

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_220_length_36054_cov_4.510163	contig	NODE_220_length_36054_cov_4.510163:18224..19609 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM139CT
PFAMs	Amidinotransf
Max annot lvl	2759\|Eukaryota
Evalue	3.56e-145
EggNOG OGs	COG2235@1\|root,2QU2S@2759\|Eukaryota
Description	Amidinotransferase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2291	Gcaud2291	Gracilaria caudata M_176_S67 male	gene	NODE_220_length_36054_cov_4.510163 18224..19609 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2291.t1.start1	Gcaud2291.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_220_length_36054_cov_4.510163 18224..18226 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2291.t1.CDS1	Gcaud2291.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 18224..19609 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2291.t1.exon1	Gcaud2291.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 18224..19609 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2291.t1.stop1	Gcaud2291.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_220_length_36054_cov_4.510163 19607..19609 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2291.t1	Gcaud2291.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_220_length_36054_cov_4.510163 18224..19609 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_220_length_36054_cov_4.510163:18224..19609+
coding sequence from alignment at NODE_220_length_36054_cov_4.510163:18224..19609+

mRNA sequence

>Gcaud2291.t1 ID=Gcaud2291.t1|Name=Gcaud2291.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp
MTLGNKRHRKQWQAGQCHENESARIVIVCAPTVLSKMMGSLHPAGALYEK
PVNTRLAVEAHQEFVKVLESRRITVYDVRDILLKNVNWSIGDRVRLENLA
FKCLTYVFKDSNDEDDLNGACASSIHGESKVLDAASRYYVSDKYKRTVIE
EMGKQQLVDIILTNPTVIISPSQRDTGFTATYQFEPLSNIVFVRDQQITT
RNGIVMARLRSQQRQREVDIMEFCFQKLGLTVIGRIPHPAHLEGGDFFPL
GEKLALIGVGPRSDWRAVQYLLENDLIGTERVAVVKDELEKKQERMHLDT
VFNVLGVDCCIMLDEMMGSESSTCRMVDVYLRDAPNPNKEFQASRGVGRY
TLEKENIEFSQYIRDQGFTIIPITGDEQLNYGCNMLNLGNGDMISIEKNT
ARRIACSEAFKGTVEFVDFEAVTCMYGGVHCASQVVSREHISGSQADASQ
PSFVTKIGNGK*

spliced messenger RNA

>Gcaud2291.t1 ID=Gcaud2291.t1|Name=Gcaud2291.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:18224..19609+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTAGGAAACAAACGTCATCGCAAACAATGGCAAGCCGGCCAATG
CCACGAAAATGAGAGTGCACGAATTGTCATTGTATGTGCTCCTACAGTTC
TTTCGAAGATGATGGGGTCATTGCACCCTGCCGGGGCGCTTTATGAAAAA
CCCGTGAACACTCGCCTCGCAGTTGAAGCCCATCAGGAATTCGTCAAAGT
TCTCGAAAGTCGAAGAATCACTGTCTATGATGTTCGTGATATCTTGCTGA
AGAACGTCAATTGGTCTATTGGCGACAGAGTACGGTTGGAAAATCTTGCC
TTCAAATGCCTTACATACGTGTTCAAAGACTCAAACGACGAAGACGACTT
AAACGGCGCTTGTGCGAGTTCAATTCATGGAGAAAGCAAGGTTCTCGACG
CGGCAAGTCGCTACTATGTTAGTGACAAATACAAGAGAACTGTTATCGAA
GAAATGGGGAAGCAACAGCTTGTAGACATAATTCTAACAAATCCAACAGT
CATTATATCCCCTTCTCAAAGAGATACGGGGTTCACTGCAACATACCAAT
TCGAACCTCTGAGCAATATTGTGTTTGTTAGAGACCAGCAAATCACGACC
CGAAATGGGATTGTAATGGCGAGGCTTCGGTCCCAACAACGTCAACGAGA
AGTGGATATCATGGAATTTTGTTTCCAGAAGCTCGGACTCACTGTAATAG
GTCGAATCCCGCATCCGGCTCACCTCGAAGGGGGAGATTTTTTCCCTTTG
GGTGAGAAACTTGCCCTCATTGGAGTCGGCCCTCGTTCCGACTGGAGAGC
TGTCCAGTACCTGCTTGAGAACGACTTGATCGGAACAGAACGTGTGGCAG
TAGTAAAAGATGAGCTGGAAAAGAAGCAGGAAAGAATGCATCTGGATACA
GTCTTCAACGTGCTCGGTGTCGATTGCTGCATCATGCTGGACGAAATGAT
GGGTTCAGAGAGTTCAACGTGTCGAATGGTAGATGTCTATTTACGCGATG
CACCTAATCCGAACAAAGAATTTCAAGCGTCAAGGGGAGTGGGAAGGTAT
ACCTTGGAAAAGGAAAACATTGAGTTCTCGCAGTACATACGTGATCAGGG
ATTCACCATTATACCAATCACTGGGGACGAACAGTTGAACTACGGCTGTA
ACATGTTGAACCTTGGCAATGGGGATATGATTTCTATCGAGAAGAATACA
GCACGCCGTATTGCGTGTTCAGAGGCATTCAAAGGAACTGTCGAGTTTGT
TGACTTTGAAGCGGTGACATGTATGTATGGTGGGGTGCACTGTGCAAGTC
AAGTCGTTTCCCGGGAACACATTTCGGGGTCTCAAGCCGACGCATCACAG
CCAAGCTTTGTGACAAAGATCGGGAACGGTAAATAG

protein sequence of Gcaud2291.t1

>Gcaud2291.t1 ID=Gcaud2291.t1|Name=Gcaud2291.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=462bp
MTLGNKRHRKQWQAGQCHENESARIVIVCAPTVLSKMMGSLHPAGALYEK
PVNTRLAVEAHQEFVKVLESRRITVYDVRDILLKNVNWSIGDRVRLENLA
FKCLTYVFKDSNDEDDLNGACASSIHGESKVLDAASRYYVSDKYKRTVIE
EMGKQQLVDIILTNPTVIISPSQRDTGFTATYQFEPLSNIVFVRDQQITT
RNGIVMARLRSQQRQREVDIMEFCFQKLGLTVIGRIPHPAHLEGGDFFPL
GEKLALIGVGPRSDWRAVQYLLENDLIGTERVAVVKDELEKKQERMHLDT
VFNVLGVDCCIMLDEMMGSESSTCRMVDVYLRDAPNPNKEFQASRGVGRY
TLEKENIEFSQYIRDQGFTIIPITGDEQLNYGCNMLNLGNGDMISIEKNT
ARRIACSEAFKGTVEFVDFEAVTCMYGGVHCASQVVSREHISGSQADASQ
PSFVTKIGNGK*

mRNA from alignment at NODE_220_length_36054_cov_4.510163:18224..19609+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2291.t1 ID=Gcaud2291.t1|Name=Gcaud2291.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:18224..19609+ (Gracilaria caudata M_176_S67 male)
ATGACGTTAGGAAACAAACGTCATCGCAAACAATGGCAAGCCGGCCAATG
CCACGAAAATGAGAGTGCACGAATTGTCATTGTATGTGCTCCTACAGTTC
TTTCGAAGATGATGGGGTCATTGCACCCTGCCGGGGCGCTTTATGAAAAA
CCCGTGAACACTCGCCTCGCAGTTGAAGCCCATCAGGAATTCGTCAAAGT
TCTCGAAAGTCGAAGAATCACTGTCTATGATGTTCGTGATATCTTGCTGA
AGAACGTCAATTGGTCTATTGGCGACAGAGTACGGTTGGAAAATCTTGCC
TTCAAATGCCTTACATACGTGTTCAAAGACTCAAACGACGAAGACGACTT
AAACGGCGCTTGTGCGAGTTCAATTCATGGAGAAAGCAAGGTTCTCGACG
CGGCAAGTCGCTACTATGTTAGTGACAAATACAAGAGAACTGTTATCGAA
GAAATGGGGAAGCAACAGCTTGTAGACATAATTCTAACAAATCCAACAGT
CATTATATCCCCTTCTCAAAGAGATACGGGGTTCACTGCAACATACCAAT
TCGAACCTCTGAGCAATATTGTGTTTGTTAGAGACCAGCAAATCACGACC
CGAAATGGGATTGTAATGGCGAGGCTTCGGTCCCAACAACGTCAACGAGA
AGTGGATATCATGGAATTTTGTTTCCAGAAGCTCGGACTCACTGTAATAG
GTCGAATCCCGCATCCGGCTCACCTCGAAGGGGGAGATTTTTTCCCTTTG
GGTGAGAAACTTGCCCTCATTGGAGTCGGCCCTCGTTCCGACTGGAGAGC
TGTCCAGTACCTGCTTGAGAACGACTTGATCGGAACAGAACGTGTGGCAG
TAGTAAAAGATGAGCTGGAAAAGAAGCAGGAAAGAATGCATCTGGATACA
GTCTTCAACGTGCTCGGTGTCGATTGCTGCATCATGCTGGACGAAATGAT
GGGTTCAGAGAGTTCAACGTGTCGAATGGTAGATGTCTATTTACGCGATG
CACCTAATCCGAACAAAGAATTTCAAGCGTCAAGGGGAGTGGGAAGGTAT
ACCTTGGAAAAGGAAAACATTGAGTTCTCGCAGTACATACGTGATCAGGG
ATTCACCATTATACCAATCACTGGGGACGAACAGTTGAACTACGGCTGTA
ACATGTTGAACCTTGGCAATGGGGATATGATTTCTATCGAGAAGAATACA
GCACGCCGTATTGCGTGTTCAGAGGCATTCAAAGGAACTGTCGAGTTTGT
TGACTTTGAAGCGGTGACATGTATGTATGGTGGGGTGCACTGTGCAAGTC
AAGTCGTTTCCCGGGAACACATTTCGGGGTCTCAAGCCGACGCATCACAG
CCAAGCTTTGTGACAAAGATCGGGAACGGTAAATAG

Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:18224..19609+

>Gcaud2291.t1 ID=Gcaud2291.t1|Name=Gcaud2291.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1386bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:18224..19609+ (Gracilaria caudata M_176_S67 male)
ATGACGTTAGGAAACAAACGTCATCGCAAACAATGGCAAGCCGGCCAATG
CCACGAAAATGAGAGTGCACGAATTGTCATTGTATGTGCTCCTACAGTTC
TTTCGAAGATGATGGGGTCATTGCACCCTGCCGGGGCGCTTTATGAAAAA
CCCGTGAACACTCGCCTCGCAGTTGAAGCCCATCAGGAATTCGTCAAAGT
TCTCGAAAGTCGAAGAATCACTGTCTATGATGTTCGTGATATCTTGCTGA
AGAACGTCAATTGGTCTATTGGCGACAGAGTACGGTTGGAAAATCTTGCC
TTCAAATGCCTTACATACGTGTTCAAAGACTCAAACGACGAAGACGACTT
AAACGGCGCTTGTGCGAGTTCAATTCATGGAGAAAGCAAGGTTCTCGACG
CGGCAAGTCGCTACTATGTTAGTGACAAATACAAGAGAACTGTTATCGAA
GAAATGGGGAAGCAACAGCTTGTAGACATAATTCTAACAAATCCAACAGT
CATTATATCCCCTTCTCAAAGAGATACGGGGTTCACTGCAACATACCAAT
TCGAACCTCTGAGCAATATTGTGTTTGTTAGAGACCAGCAAATCACGACC
CGAAATGGGATTGTAATGGCGAGGCTTCGGTCCCAACAACGTCAACGAGA
AGTGGATATCATGGAATTTTGTTTCCAGAAGCTCGGACTCACTGTAATAG
GTCGAATCCCGCATCCGGCTCACCTCGAAGGGGGAGATTTTTTCCCTTTG
GGTGAGAAACTTGCCCTCATTGGAGTCGGCCCTCGTTCCGACTGGAGAGC
TGTCCAGTACCTGCTTGAGAACGACTTGATCGGAACAGAACGTGTGGCAG
TAGTAAAAGATGAGCTGGAAAAGAAGCAGGAAAGAATGCATCTGGATACA
GTCTTCAACGTGCTCGGTGTCGATTGCTGCATCATGCTGGACGAAATGAT
GGGTTCAGAGAGTTCAACGTGTCGAATGGTAGATGTCTATTTACGCGATG
CACCTAATCCGAACAAAGAATTTCAAGCGTCAAGGGGAGTGGGAAGGTAT
ACCTTGGAAAAGGAAAACATTGAGTTCTCGCAGTACATACGTGATCAGGG
ATTCACCATTATACCAATCACTGGGGACGAACAGTTGAACTACGGCTGTA
ACATGTTGAACCTTGGCAATGGGGATATGATTTCTATCGAGAAGAATACA
GCACGCCGTATTGCGTGTTCAGAGGCATTCAAAGGAACTGTCGAGTTTGT
TGACTTTGAAGCGGTGACATGTATGTATGGTGGGGTGCACTGTGCAAGTC
AAGTCGTTTCCCGGGAACACATTTCGGGGTCTCAAGCCGACGCATCACAG
CCAAGCTTTGTGACAAAGATCGGGAACGGTAAATAG