Gcaud2288.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2288.t1
Unique Name	Gcaud2288.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_220_length_36054_cov_4.510163	contig	NODE_220_length_36054_cov_4.510163:11827..13555 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28377.ENSACAP00000013023
Preferred name	CCT3
PFAMs	Cpn60_TCP1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09495
GOs	GO:0000003,GO:0002199,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006457,GO:0006458,GO:0006810,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0035036,GO:0042623,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0071944,GO:0080090,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue	4.1e-241
EggNOG OGs	COG0459@1\|root,KOG0364@2759\|Eukaryota,38GPW@33154\|Opisthokonta,3BFX2@33208\|Metazoa,3CYB8@33213\|Bilateria,47ZAK@7711\|Chordata,48XID@7742\|Vertebrata
Description	positive regulation of establishment of protein localization to telomere
COG category	O
BRITE	ko00000,ko03036,ko03110,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2288	Gcaud2288	Gracilaria caudata M_176_S67 male	gene	NODE_220_length_36054_cov_4.510163 11827..13555 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2288.t1	Gcaud2288.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_220_length_36054_cov_4.510163 11827..13555 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2288.t1.start1	Gcaud2288.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_220_length_36054_cov_4.510163 11827..11829 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2288.t1.CDS1	Gcaud2288.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 11827..11851 +
Gcaud2288.t1.CDS2	Gcaud2288.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 11949..13555 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2288.t1.exon1	Gcaud2288.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 11827..11851 +
Gcaud2288.t1.exon2	Gcaud2288.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 11949..13555 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2288.t1.intron1	Gcaud2288.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_220_length_36054_cov_4.510163 11852..11948 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2288.t1.stop1	Gcaud2288.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_220_length_36054_cov_4.510163 13553..13555 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_220_length_36054_cov_4.510163:11827..13555+
coding sequence from alignment at NODE_220_length_36054_cov_4.510163:11827..13555+

mRNA sequence

>Gcaud2288.t1 ID=Gcaud2288.t1|Name=Gcaud2288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=544bp
MQAPVLVLNQNAKRETGRRAQLTNIAAARAVSDIIRTTLGPRAMLKMILD
AMGNIVLTNDGNAILREIDVSHPAAKSMIELSRTQDEEVGDGTTSVTVLA
GEILSICETFLERNLHPTVIVSALFKALDDAVGFAEEMSVAVDVNDDEQV
LQLIRSCIGTKYVTRHDNLIVDIAFRAVKTVRVNVEGRLIMDIKNFAKVE
KIAGGELSDSAVLDGVMFNKDVTSARMRRRIENPRIILLDCPLEYRKAES
QTNVEITQENDWKRLLEIEEEYVMSLCKKLLEHKPDLVITEKGASDLALH
ILSRKGVSVIRRLRKSDNNRIAKACGAIVVSRVEELKKTDVGTGAGLFEI
KKIGDEYYSFITGCKDPKACTILLRGGSKDVLMEVERNLEDAMAVARNIF
LNSKMVPGGGAIEMAVANRLQAKSKTITGVSQYPYRAVAEALEVIPRTLI
ENCGGNVIRVLTALRAKHSETESEESKFWGIDGMKGVATDMRELGIWEPL
VVKTQTMKTAMEAAAMLLRIDDIVSGLSKKKDNSSYHAPDDDE*

spliced messenger RNA

>Gcaud2288.t1 ID=Gcaud2288.t1|Name=Gcaud2288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:11827..13555+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCGCCAGTTCTAGTTCTTAATCAGAATGCGAAGCGAGAAACTGG
GCGACGTGCTCAGCTAACGAACATCGCCGCCGCCAGAGCGGTATCGGACA
TCATCCGTACCACCCTGGGTCCGCGCGCAATGCTGAAGATGATACTTGAC
GCCATGGGGAACATTGTCTTAACTAATGACGGGAATGCTATTCTAAGGGA
GATCGATGTCTCGCATCCCGCTGCCAAGTCGATGATCGAGCTTTCACGCA
CTCAAGACGAAGAGGTTGGAGATGGCACAACATCAGTTACTGTGCTTGCC
GGTGAAATACTGAGCATTTGCGAAACGTTCCTCGAGCGAAATCTTCATCC
GACCGTGATTGTTTCCGCTCTGTTTAAAGCTCTCGATGATGCCGTAGGTT
TTGCTGAAGAAATGTCCGTTGCAGTCGACGTGAATGACGACGAGCAAGTG
CTTCAGCTCATTCGCTCATGTATCGGAACTAAGTACGTTACGAGACACGA
CAATCTTATCGTCGACATTGCGTTCAGAGCTGTGAAGACTGTGCGTGTTA
ATGTGGAGGGAAGGCTGATCATGGATATTAAGAACTTTGCAAAGGTTGAG
AAAATTGCTGGCGGTGAGCTCTCAGACAGTGCTGTTCTCGACGGCGTTAT
GTTCAACAAAGATGTCACTAGCGCTAGAATGCGTCGACGAATTGAGAATC
CGCGAATCATTTTACTTGATTGTCCTTTGGAGTATCGCAAGGCAGAGTCT
CAGACAAACGTAGAGATCACCCAGGAGAATGACTGGAAGCGATTGTTGGA
AATCGAGGAAGAATACGTGATGAGTCTTTGTAAAAAGCTCTTGGAACATA
AACCGGACTTGGTGATAACGGAGAAGGGTGCAAGTGATCTCGCTCTTCAT
ATTCTAAGCAGGAAGGGCGTTTCAGTTATTAGAAGGTTGAGAAAGAGTGA
CAACAATAGAATAGCCAAAGCATGTGGGGCGATCGTTGTGTCAAGAGTTG
AGGAGCTGAAGAAAACTGACGTTGGAACTGGAGCTGGTCTTTTCGAAATC
AAGAAGATAGGTGATGAATATTACTCGTTTATCACAGGCTGCAAAGACCC
CAAAGCCTGTACGATTTTGCTGCGGGGCGGTTCAAAGGATGTCCTAATGG
AAGTGGAGAGAAATCTGGAAGATGCCATGGCAGTGGCGAGGAACATCTTC
CTGAACTCCAAAATGGTTCCAGGAGGCGGTGCGATTGAAATGGCCGTTGC
AAACCGCTTGCAGGCAAAGTCCAAGACAATAACAGGAGTAAGCCAGTATC
CGTACCGTGCCGTTGCAGAAGCTCTAGAAGTAATTCCCCGCACTTTGATA
GAGAACTGTGGGGGGAATGTCATTAGAGTGCTGACGGCTCTTCGCGCAAA
GCACAGTGAAACCGAAAGCGAAGAATCAAAGTTTTGGGGTATTGACGGTA
TGAAAGGCGTCGCTACTGATATGAGGGAACTTGGAATATGGGAACCACTG
GTTGTGAAAACACAAACTATGAAGACGGCAATGGAGGCCGCAGCTATGCT
CCTTCGTATAGATGATATTGTCTCAGGCTTGTCCAAGAAGAAAGACAATA
GTTCATACCACGCTCCGGATGACGATGAATAA

protein sequence of Gcaud2288.t1

>Gcaud2288.t1 ID=Gcaud2288.t1|Name=Gcaud2288.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=544bp
MQAPVLVLNQNAKRETGRRAQLTNIAAARAVSDIIRTTLGPRAMLKMILD
AMGNIVLTNDGNAILREIDVSHPAAKSMIELSRTQDEEVGDGTTSVTVLA
GEILSICETFLERNLHPTVIVSALFKALDDAVGFAEEMSVAVDVNDDEQV
LQLIRSCIGTKYVTRHDNLIVDIAFRAVKTVRVNVEGRLIMDIKNFAKVE
KIAGGELSDSAVLDGVMFNKDVTSARMRRRIENPRIILLDCPLEYRKAES
QTNVEITQENDWKRLLEIEEEYVMSLCKKLLEHKPDLVITEKGASDLALH
ILSRKGVSVIRRLRKSDNNRIAKACGAIVVSRVEELKKTDVGTGAGLFEI
KKIGDEYYSFITGCKDPKACTILLRGGSKDVLMEVERNLEDAMAVARNIF
LNSKMVPGGGAIEMAVANRLQAKSKTITGVSQYPYRAVAEALEVIPRTLI
ENCGGNVIRVLTALRAKHSETESEESKFWGIDGMKGVATDMRELGIWEPL
VVKTQTMKTAMEAAAMLLRIDDIVSGLSKKKDNSSYHAPDDDE*

mRNA from alignment at NODE_220_length_36054_cov_4.510163:11827..13555+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2288.t1 ID=Gcaud2288.t1|Name=Gcaud2288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1729bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:11827..13555+ (Gracilaria caudata M_176_S67 male)
ATGCAAGCGCCAGTTCTAGTTCTTAGTAAGTGGTCGAAACCTCAACACAA
GTGTACCTTTGTTGTTCACCAATTCAACGCATCTAACTCAAAACTCTCCC
TCCTTCCTTTCCTCTAACTCAGATCAGAATGCGAAGCGAGAAACTGGGCG
ACGTGCTCAGCTAACGAACATCGCCGCCGCCAGAGCGGTATCGGACATCA
TCCGTACCACCCTGGGTCCGCGCGCAATGCTGAAGATGATACTTGACGCC
ATGGGGAACATTGTCTTAACTAATGACGGGAATGCTATTCTAAGGGAGAT
CGATGTCTCGCATCCCGCTGCCAAGTCGATGATCGAGCTTTCACGCACTC
AAGACGAAGAGGTTGGAGATGGCACAACATCAGTTACTGTGCTTGCCGGT
GAAATACTGAGCATTTGCGAAACGTTCCTCGAGCGAAATCTTCATCCGAC
CGTGATTGTTTCCGCTCTGTTTAAAGCTCTCGATGATGCCGTAGGTTTTG
CTGAAGAAATGTCCGTTGCAGTCGACGTGAATGACGACGAGCAAGTGCTT
CAGCTCATTCGCTCATGTATCGGAACTAAGTACGTTACGAGACACGACAA
TCTTATCGTCGACATTGCGTTCAGAGCTGTGAAGACTGTGCGTGTTAATG
TGGAGGGAAGGCTGATCATGGATATTAAGAACTTTGCAAAGGTTGAGAAA
ATTGCTGGCGGTGAGCTCTCAGACAGTGCTGTTCTCGACGGCGTTATGTT
CAACAAAGATGTCACTAGCGCTAGAATGCGTCGACGAATTGAGAATCCGC
GAATCATTTTACTTGATTGTCCTTTGGAGTATCGCAAGGCAGAGTCTCAG
ACAAACGTAGAGATCACCCAGGAGAATGACTGGAAGCGATTGTTGGAAAT
CGAGGAAGAATACGTGATGAGTCTTTGTAAAAAGCTCTTGGAACATAAAC
CGGACTTGGTGATAACGGAGAAGGGTGCAAGTGATCTCGCTCTTCATATT
CTAAGCAGGAAGGGCGTTTCAGTTATTAGAAGGTTGAGAAAGAGTGACAA
CAATAGAATAGCCAAAGCATGTGGGGCGATCGTTGTGTCAAGAGTTGAGG
AGCTGAAGAAAACTGACGTTGGAACTGGAGCTGGTCTTTTCGAAATCAAG
AAGATAGGTGATGAATATTACTCGTTTATCACAGGCTGCAAAGACCCCAA
AGCCTGTACGATTTTGCTGCGGGGCGGTTCAAAGGATGTCCTAATGGAAG
TGGAGAGAAATCTGGAAGATGCCATGGCAGTGGCGAGGAACATCTTCCTG
AACTCCAAAATGGTTCCAGGAGGCGGTGCGATTGAAATGGCCGTTGCAAA
CCGCTTGCAGGCAAAGTCCAAGACAATAACAGGAGTAAGCCAGTATCCGT
ACCGTGCCGTTGCAGAAGCTCTAGAAGTAATTCCCCGCACTTTGATAGAG
AACTGTGGGGGGAATGTCATTAGAGTGCTGACGGCTCTTCGCGCAAAGCA
CAGTGAAACCGAAAGCGAAGAATCAAAGTTTTGGGGTATTGACGGTATGA
AAGGCGTCGCTACTGATATGAGGGAACTTGGAATATGGGAACCACTGGTT
GTGAAAACACAAACTATGAAGACGGCAATGGAGGCCGCAGCTATGCTCCT
TCGTATAGATGATATTGTCTCAGGCTTGTCCAAGAAGAAAGACAATAGTT
CATACCACGCTCCGGATGACGATGAATAA

Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:11827..13555+

>Gcaud2288.t1 ID=Gcaud2288.t1|Name=Gcaud2288.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1632bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:11827..13555+ (Gracilaria caudata M_176_S67 male)
ATGCAAGCGCCAGTTCTAGTTCTTAATCAGAATGCGAAGCGAGAAACTGG
GCGACGTGCTCAGCTAACGAACATCGCCGCCGCCAGAGCGGTATCGGACA
TCATCCGTACCACCCTGGGTCCGCGCGCAATGCTGAAGATGATACTTGAC
GCCATGGGGAACATTGTCTTAACTAATGACGGGAATGCTATTCTAAGGGA
GATCGATGTCTCGCATCCCGCTGCCAAGTCGATGATCGAGCTTTCACGCA
CTCAAGACGAAGAGGTTGGAGATGGCACAACATCAGTTACTGTGCTTGCC
GGTGAAATACTGAGCATTTGCGAAACGTTCCTCGAGCGAAATCTTCATCC
GACCGTGATTGTTTCCGCTCTGTTTAAAGCTCTCGATGATGCCGTAGGTT
TTGCTGAAGAAATGTCCGTTGCAGTCGACGTGAATGACGACGAGCAAGTG
CTTCAGCTCATTCGCTCATGTATCGGAACTAAGTACGTTACGAGACACGA
CAATCTTATCGTCGACATTGCGTTCAGAGCTGTGAAGACTGTGCGTGTTA
ATGTGGAGGGAAGGCTGATCATGGATATTAAGAACTTTGCAAAGGTTGAG
AAAATTGCTGGCGGTGAGCTCTCAGACAGTGCTGTTCTCGACGGCGTTAT
GTTCAACAAAGATGTCACTAGCGCTAGAATGCGTCGACGAATTGAGAATC
CGCGAATCATTTTACTTGATTGTCCTTTGGAGTATCGCAAGGCAGAGTCT
CAGACAAACGTAGAGATCACCCAGGAGAATGACTGGAAGCGATTGTTGGA
AATCGAGGAAGAATACGTGATGAGTCTTTGTAAAAAGCTCTTGGAACATA
AACCGGACTTGGTGATAACGGAGAAGGGTGCAAGTGATCTCGCTCTTCAT
ATTCTAAGCAGGAAGGGCGTTTCAGTTATTAGAAGGTTGAGAAAGAGTGA
CAACAATAGAATAGCCAAAGCATGTGGGGCGATCGTTGTGTCAAGAGTTG
AGGAGCTGAAGAAAACTGACGTTGGAACTGGAGCTGGTCTTTTCGAAATC
AAGAAGATAGGTGATGAATATTACTCGTTTATCACAGGCTGCAAAGACCC
CAAAGCCTGTACGATTTTGCTGCGGGGCGGTTCAAAGGATGTCCTAATGG
AAGTGGAGAGAAATCTGGAAGATGCCATGGCAGTGGCGAGGAACATCTTC
CTGAACTCCAAAATGGTTCCAGGAGGCGGTGCGATTGAAATGGCCGTTGC
AAACCGCTTGCAGGCAAAGTCCAAGACAATAACAGGAGTAAGCCAGTATC
CGTACCGTGCCGTTGCAGAAGCTCTAGAAGTAATTCCCCGCACTTTGATA
GAGAACTGTGGGGGGAATGTCATTAGAGTGCTGACGGCTCTTCGCGCAAA
GCACAGTGAAACCGAAAGCGAAGAATCAAAGTTTTGGGGTATTGACGGTA
TGAAAGGCGTCGCTACTGATATGAGGGAACTTGGAATATGGGAACCACTG
GTTGTGAAAACACAAACTATGAAGACGGCAATGGAGGCCGCAGCTATGCT
CCTTCGTATAGATGATATTGTCTCAGGCTTGTCCAAGAAGAAAGACAATA
GTTCATACCACGCTCCGGATGACGATGAATAA