Gcaud2260.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2260.t1
Unique NameGcaud2260.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_996_length_15378_cov_4.026820contigNODE_996_length_15378_cov_4.026820:6461..7810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709118.1
Preferred nameCEG1
PFAMsmRNA_cap_C,mRNA_cap_enzyme
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00987,ko:K13917,ko:K21996
KEGG ReactionR03828,R10814
KEGG Pathwayko03015,map03015
GOsGO:0003674,GO:0003824,GO:0004484,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006355,GO:0006357,GO:0006370,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008192,GO:0009452,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031533,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036260,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070568,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue5.51e-104
EggNOG OGsCOG5226@1|root,KOG2386@2759|Eukaryota
EC2.7.7.50
DescriptionmRNA guanylyltransferase activity
COG categoryA
BRITEko00000,ko00001,ko01000,ko03019,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2260Gcaud2260Gracilaria caudata M_176_S67 malegeneNODE_996_length_15378_cov_4.026820 6461..7810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2260.t1.stop1Gcaud2260.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_996_length_15378_cov_4.026820 6461..6463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2260.t1.CDS1Gcaud2260.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_996_length_15378_cov_4.026820 6461..7810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2260.t1.exon1Gcaud2260.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_996_length_15378_cov_4.026820 6461..7810 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2260.t1.start1Gcaud2260.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_996_length_15378_cov_4.026820 7808..7810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2260.t1Gcaud2260.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_996_length_15378_cov_4.026820 6461..7810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2260.t1 ID=Gcaud2260.t1|Name=Gcaud2260.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MAELGLAPVPRSEPLLRQIQDHFQALIQKATNSRERVYRFPGTMPLTLSR
RHFGMIESNDYVALEKSDGTRYMLFAVSNNVLLIDRTMNFYAVEPYPQVL
TPGFVEQQQDTILDGELTFNLMTQQYEYLIYDCISINGDLGIAQKGFRAR
MDAAAVFVAAPRLWAPFCAGLLRLRIKDYYEKKDIRRLFAHIKKDQQGKY
IYVNNDRRDGVLCNENDGVILAPVGIPYKTKKCEALLKWKPPHLNSIDFT
LQLERAHDERRNVPTVKPYIAYKGDRGLIRLREVIIPSKQKIKWAAEFDR
FNGAVVELSYDKHAGEWRYLRIRDDKDGPNFASTVIDTLETIVESVEREE
FVAHIEKARKPIPDHERQFVEVNARNQEACIFRNDLFDETNHDYLVTTSI
SLIPIPLMGPPPRRRDGGRRGHRRHPVANGDLADGMDGDRIPVEYADDV*
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spliced messenger RNA

>Gcaud2260.t1 ID=Gcaud2260.t1|Name=Gcaud2260.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:6461..7810- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGCTCGGACTTGCGCCCGTCCCCCGCAGCGAGCCGTTGCTGCG
TCAGATTCAGGACCACTTTCAGGCGCTCATCCAGAAGGCCACCAACTCGC
GCGAACGCGTGTACCGCTTCCCCGGCACCATGCCGCTCACGCTGTCGCGC
CGCCACTTCGGCATGATCGAGAGCAACGACTACGTCGCGCTCGAGAAGTC
CGATGGTACCCGATACATGCTGTTCGCCGTCAGCAACAACGTGCTGCTCA
TAGATCGCACCATGAACTTCTACGCCGTCGAGCCGTATCCGCAGGTGCTC
ACGCCCGGCTTCGTCGAGCAGCAGCAGGATACTATCTTGGACGGCGAACT
CACGTTCAACCTCATGACTCAGCAGTACGAATATCTGATTTACGACTGCA
TCTCCATCAATGGCGACCTCGGCATCGCCCAGAAGGGCTTTCGCGCCCGC
ATGGATGCTGCCGCCGTTTTCGTTGCCGCCCCGCGTCTGTGGGCCCCTTT
TTGCGCCGGTCTTTTGCGTCTGCGCATCAAAGACTACTACGAAAAGAAAG
ATATCCGGCGCTTGTTTGCTCACATTAAAAAAGATCAACAAGGTAAGTAT
ATCTACGTTAACAATGACAGACGAGACGGCGTGCTATGCAACGAAAACGA
TGGCGTAATCCTTGCGCCCGTCGGCATTCCGTACAAGACAAAGAAATGCG
AAGCTCTGCTCAAGTGGAAGCCTCCACACCTTAATTCTATCGATTTCACC
CTTCAATTGGAACGAGCGCACGATGAACGACGCAACGTGCCCACTGTAAA
ACCTTACATTGCGTACAAGGGCGACCGCGGCCTTATTAGGCTCAGAGAGG
TCATCATCCCATCCAAGCAGAAAATCAAGTGGGCCGCAGAATTCGATCGC
TTCAACGGAGCCGTAGTTGAACTATCCTACGACAAACACGCCGGTGAATG
GAGATATCTTCGCATCCGCGACGACAAAGACGGTCCCAATTTTGCGTCAA
CAGTTATTGACACCCTGGAGACCATTGTCGAATCGGTGGAAAGAGAGGAG
TTCGTCGCCCACATTGAGAAAGCAAGAAAGCCTATTCCAGATCATGAGCG
TCAATTCGTGGAAGTTAATGCCCGAAACCAAGAGGCTTGTATATTTCGCA
ACGATCTTTTTGATGAGACCAACCACGATTATCTCGTGACCACCTCAATA
TCGTTGATTCCTATCCCGCTCATGGGACCACCTCCACGGCGTCGCGACGG
CGGGCGCCGGGGGCACCGCCGACATCCAGTCGCAAATGGAGACTTGGCAG
ATGGAATGGATGGCGACCGTATTCCCGTTGAGTACGCCGATGATGTGTAG
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protein sequence of Gcaud2260.t1

>Gcaud2260.t1 ID=Gcaud2260.t1|Name=Gcaud2260.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MAELGLAPVPRSEPLLRQIQDHFQALIQKATNSRERVYRFPGTMPLTLSR
RHFGMIESNDYVALEKSDGTRYMLFAVSNNVLLIDRTMNFYAVEPYPQVL
TPGFVEQQQDTILDGELTFNLMTQQYEYLIYDCISINGDLGIAQKGFRAR
MDAAAVFVAAPRLWAPFCAGLLRLRIKDYYEKKDIRRLFAHIKKDQQGKY
IYVNNDRRDGVLCNENDGVILAPVGIPYKTKKCEALLKWKPPHLNSIDFT
LQLERAHDERRNVPTVKPYIAYKGDRGLIRLREVIIPSKQKIKWAAEFDR
FNGAVVELSYDKHAGEWRYLRIRDDKDGPNFASTVIDTLETIVESVEREE
FVAHIEKARKPIPDHERQFVEVNARNQEACIFRNDLFDETNHDYLVTTSI
SLIPIPLMGPPPRRRDGGRRGHRRHPVANGDLADGMDGDRIPVEYADDV*
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mRNA from alignment at NODE_996_length_15378_cov_4.026820:6461..7810-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2260.t1 ID=Gcaud2260.t1|Name=Gcaud2260.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:6461..7810- (Gracilaria caudata M_176_S67 male)
ATGGCTGAGCTCGGACTTGCGCCCGTCCCCCGCAGCGAGCCGTTGCTGCG
TCAGATTCAGGACCACTTTCAGGCGCTCATCCAGAAGGCCACCAACTCGC
GCGAACGCGTGTACCGCTTCCCCGGCACCATGCCGCTCACGCTGTCGCGC
CGCCACTTCGGCATGATCGAGAGCAACGACTACGTCGCGCTCGAGAAGTC
CGATGGTACCCGATACATGCTGTTCGCCGTCAGCAACAACGTGCTGCTCA
TAGATCGCACCATGAACTTCTACGCCGTCGAGCCGTATCCGCAGGTGCTC
ACGCCCGGCTTCGTCGAGCAGCAGCAGGATACTATCTTGGACGGCGAACT
CACGTTCAACCTCATGACTCAGCAGTACGAATATCTGATTTACGACTGCA
TCTCCATCAATGGCGACCTCGGCATCGCCCAGAAGGGCTTTCGCGCCCGC
ATGGATGCTGCCGCCGTTTTCGTTGCCGCCCCGCGTCTGTGGGCCCCTTT
TTGCGCCGGTCTTTTGCGTCTGCGCATCAAAGACTACTACGAAAAGAAAG
ATATCCGGCGCTTGTTTGCTCACATTAAAAAAGATCAACAAGGTAAGTAT
ATCTACGTTAACAATGACAGACGAGACGGCGTGCTATGCAACGAAAACGA
TGGCGTAATCCTTGCGCCCGTCGGCATTCCGTACAAGACAAAGAAATGCG
AAGCTCTGCTCAAGTGGAAGCCTCCACACCTTAATTCTATCGATTTCACC
CTTCAATTGGAACGAGCGCACGATGAACGACGCAACGTGCCCACTGTAAA
ACCTTACATTGCGTACAAGGGCGACCGCGGCCTTATTAGGCTCAGAGAGG
TCATCATCCCATCCAAGCAGAAAATCAAGTGGGCCGCAGAATTCGATCGC
TTCAACGGAGCCGTAGTTGAACTATCCTACGACAAACACGCCGGTGAATG
GAGATATCTTCGCATCCGCGACGACAAAGACGGTCCCAATTTTGCGTCAA
CAGTTATTGACACCCTGGAGACCATTGTCGAATCGGTGGAAAGAGAGGAG
TTCGTCGCCCACATTGAGAAAGCAAGAAAGCCTATTCCAGATCATGAGCG
TCAATTCGTGGAAGTTAATGCCCGAAACCAAGAGGCTTGTATATTTCGCA
ACGATCTTTTTGATGAGACCAACCACGATTATCTCGTGACCACCTCAATA
TCGTTGATTCCTATCCCGCTCATGGGACCACCTCCACGGCGTCGCGACGG
CGGGCGCCGGGGGCACCGCCGACATCCAGTCGCAAATGGAGACTTGGCAG
ATGGAATGGATGGCGACCGTATTCCCGTTGAGTACGCCGATGATGTGTAG
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Coding sequence (CDS) from alignment at NODE_996_length_15378_cov_4.026820:6461..7810-

>Gcaud2260.t1 ID=Gcaud2260.t1|Name=Gcaud2260.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:6461..7810- (Gracilaria caudata M_176_S67 male)
ATGGCTGAGCTCGGACTTGCGCCCGTCCCCCGCAGCGAGCCGTTGCTGCG
TCAGATTCAGGACCACTTTCAGGCGCTCATCCAGAAGGCCACCAACTCGC
GCGAACGCGTGTACCGCTTCCCCGGCACCATGCCGCTCACGCTGTCGCGC
CGCCACTTCGGCATGATCGAGAGCAACGACTACGTCGCGCTCGAGAAGTC
CGATGGTACCCGATACATGCTGTTCGCCGTCAGCAACAACGTGCTGCTCA
TAGATCGCACCATGAACTTCTACGCCGTCGAGCCGTATCCGCAGGTGCTC
ACGCCCGGCTTCGTCGAGCAGCAGCAGGATACTATCTTGGACGGCGAACT
CACGTTCAACCTCATGACTCAGCAGTACGAATATCTGATTTACGACTGCA
TCTCCATCAATGGCGACCTCGGCATCGCCCAGAAGGGCTTTCGCGCCCGC
ATGGATGCTGCCGCCGTTTTCGTTGCCGCCCCGCGTCTGTGGGCCCCTTT
TTGCGCCGGTCTTTTGCGTCTGCGCATCAAAGACTACTACGAAAAGAAAG
ATATCCGGCGCTTGTTTGCTCACATTAAAAAAGATCAACAAGGTAAGTAT
ATCTACGTTAACAATGACAGACGAGACGGCGTGCTATGCAACGAAAACGA
TGGCGTAATCCTTGCGCCCGTCGGCATTCCGTACAAGACAAAGAAATGCG
AAGCTCTGCTCAAGTGGAAGCCTCCACACCTTAATTCTATCGATTTCACC
CTTCAATTGGAACGAGCGCACGATGAACGACGCAACGTGCCCACTGTAAA
ACCTTACATTGCGTACAAGGGCGACCGCGGCCTTATTAGGCTCAGAGAGG
TCATCATCCCATCCAAGCAGAAAATCAAGTGGGCCGCAGAATTCGATCGC
TTCAACGGAGCCGTAGTTGAACTATCCTACGACAAACACGCCGGTGAATG
GAGATATCTTCGCATCCGCGACGACAAAGACGGTCCCAATTTTGCGTCAA
CAGTTATTGACACCCTGGAGACCATTGTCGAATCGGTGGAAAGAGAGGAG
TTCGTCGCCCACATTGAGAAAGCAAGAAAGCCTATTCCAGATCATGAGCG
TCAATTCGTGGAAGTTAATGCCCGAAACCAAGAGGCTTGTATATTTCGCA
ACGATCTTTTTGATGAGACCAACCACGATTATCTCGTGACCACCTCAATA
TCGTTGATTCCTATCCCGCTCATGGGACCACCTCCACGGCGTCGCGACGG
CGGGCGCCGGGGGCACCGCCGACATCCAGTCGCAAATGGAGACTTGGCAG
ATGGAATGGATGGCGACCGTATTCCCGTTGAGTACGCCGATGATGTGTAG
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