Gcaud2258.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2258.t1
Unique Name	Gcaud2258.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	676

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_996_length_15378_cov_4.026820	contig	NODE_996_length_15378_cov_4.026820:1278..3305 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708864.1
Preferred name	ITFG1
PFAMs	VCBS
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00671,ko:K17257
GOs	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0016324,GO:0016328,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0071944,GO:0098590
Evalue	1.88e-64
EggNOG OGs	KOG4550@1\|root,KOG4550@2759\|Eukaryota
EC	2.3.1.97
Description	protein kinase activity
COG category	T
BRITE	ko00000,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2258	Gcaud2258	Gracilaria caudata M_176_S67 male	gene	NODE_996_length_15378_cov_4.026820 1278..3305 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2258.t1.stop1	Gcaud2258.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_996_length_15378_cov_4.026820 1278..1280 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2258.t1.CDS1	Gcaud2258.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_996_length_15378_cov_4.026820 1278..3305 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2258.t1.exon1	Gcaud2258.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_996_length_15378_cov_4.026820 1278..3305 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2258.t1.start1	Gcaud2258.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_996_length_15378_cov_4.026820 3303..3305 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2258.t1	Gcaud2258.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_996_length_15378_cov_4.026820 1278..3305 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_996_length_15378_cov_4.026820:1278..3305-
coding sequence from alignment at NODE_996_length_15378_cov_4.026820:1278..3305-

mRNA sequence

>Gcaud2258.t1 ID=Gcaud2258.t1|Name=Gcaud2258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=676bp
MFILLYTLFIVLHIASSAIFNTQPRDIPRPPPNPHSGSLLSSELFTDQSD
YLGLGDAAGSVVAVGDFTADRYVDLLVVPHTRVMRSLQVLVWNHHKYSFN
RGTCSSNSTFRSVLNLNSIPGASPEARIVSAAPFDANSDGFLDVLVNVLL
PDGSHVGLILRGDGFGCLRFDRVLPGLTPNMLIMDANDDMHSDIFFISDQ
SERVFYINGPPGRFTKTIWRPEPPYDQCVPTTPVNSNAFVDIDGDCEPDF
VVSSSCGLEVWFNRGLHEKSSSRWVYGQQRFKKDPHNFSNTSKALDPFKV
LILNSSVWDPSHGDGQATFADFNADGAIDIAVANRLQGEVRISYNVRRPY
YEKKLCSVDPSWHYETHVALADVHVSDTLFGSMRLQSRIRTGDFNYDGKL
DLLLIDGDSGTLSLYAGASTDSNAMWYPRPDKFVERVLFPLTGKLGSGHE
PKKKHLHFSRFSETPILYNLEDPIAAAFIDLDESGRQDLLISQRHGTRLI
WNSYQDKEDAVYFKATGVNAAHRGWKSKTGGIQAFSPLPGNTFKVSYGGR
FGRETHTCTQCPQTSVLSLQPCSCLFGITRIANYIEEMAMGGSGGVRTWT
SLMPNALAVIWPQGRRAQGGVKWKVSYLSRGRDGQMKRIVFVLCVTLVLL
FFAILYIHTVQGREEKPGKFDFGYT*

spliced messenger RNA

>Gcaud2258.t1 ID=Gcaud2258.t1|Name=Gcaud2258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:1278..3305- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATTCTTCTGTACACTTTGTTTATCGTCTTACACATAGCCTCTTC
TGCCATTTTTAACACGCAACCTCGTGACATCCCGCGTCCACCGCCAAATC
CACATTCGGGATCTCTTCTATCATCAGAATTATTCACAGACCAAAGTGAT
TACCTTGGCTTAGGAGATGCTGCTGGCTCAGTGGTAGCAGTTGGTGACTT
CACTGCCGACCGTTATGTCGACCTACTCGTCGTACCTCACACCAGAGTGA
TGCGCTCCCTTCAGGTTTTGGTATGGAATCATCATAAGTACTCTTTCAAT
CGCGGTACTTGTTCTTCTAATTCAACTTTCAGAAGTGTATTGAACCTCAA
CTCTATTCCAGGCGCATCGCCTGAGGCTAGAATTGTCTCTGCGGCTCCTT
TCGATGCCAATTCCGACGGATTTCTCGATGTCCTTGTCAATGTTCTCCTT
CCGGATGGCTCTCACGTTGGATTGATTTTACGAGGAGATGGTTTCGGGTG
TCTGCGCTTTGACAGGGTTCTTCCGGGGCTCACACCGAACATGTTAATCA
TGGATGCGAACGATGATATGCACAGTGATATCTTCTTTATTTCTGATCAA
TCCGAGCGAGTGTTTTACATAAACGGACCCCCTGGACGCTTTACGAAAAC
GATTTGGAGGCCCGAACCACCATATGATCAATGCGTTCCAACCACGCCGG
TAAACTCCAATGCCTTCGTTGATATTGATGGTGACTGTGAACCAGATTTT
GTCGTCTCCTCTTCGTGCGGACTAGAGGTGTGGTTCAATCGGGGCTTGCA
CGAAAAAAGTTCCTCACGCTGGGTTTATGGTCAGCAAAGGTTCAAGAAAG
ATCCTCACAACTTCTCAAACACGTCGAAAGCATTAGATCCGTTTAAAGTA
CTGATACTGAACTCATCGGTGTGGGATCCGTCTCATGGAGACGGCCAGGC
CACATTCGCTGATTTTAATGCAGATGGTGCAATTGACATCGCGGTTGCAA
ATCGCCTTCAAGGTGAGGTGAGGATTTCGTACAACGTTAGACGTCCATAT
TACGAGAAGAAGCTTTGCTCCGTTGACCCCTCCTGGCACTATGAAACACA
TGTTGCACTTGCAGATGTTCACGTCTCTGATACTCTGTTTGGTTCAATGC
GTCTACAGAGCCGTATTCGCACCGGAGATTTCAATTATGACGGGAAACTG
GATTTGCTTCTCATCGACGGAGATAGCGGCACTCTAAGCCTATACGCAGG
CGCTTCTACTGATTCGAACGCTATGTGGTACCCAAGACCAGACAAATTTG
TCGAACGCGTTCTTTTCCCACTGACTGGAAAGCTTGGAAGTGGGCATGAG
CCCAAAAAGAAGCATTTGCACTTCAGTAGGTTTAGTGAGACTCCAATACT
GTACAATCTGGAGGATCCTATCGCAGCTGCTTTCATTGACCTAGACGAAA
GCGGGCGGCAGGATCTTCTAATATCGCAGCGTCATGGGACCAGACTGATA
TGGAACAGTTATCAAGACAAGGAGGACGCTGTGTATTTCAAAGCAACTGG
AGTAAACGCCGCTCACAGAGGTTGGAAATCAAAGACAGGAGGGATTCAAG
CCTTTTCGCCACTGCCAGGCAACACCTTCAAGGTTTCATATGGTGGGCGC
TTTGGGCGCGAAACTCATACGTGCACGCAGTGCCCACAAACCAGCGTTCT
CTCCCTGCAACCGTGTTCATGTCTGTTTGGAATAACTCGCATCGCAAATT
ACATCGAAGAGATGGCCATGGGCGGATCAGGAGGGGTGAGAACATGGACG
AGTTTAATGCCGAATGCTCTAGCCGTGATCTGGCCACAAGGGCGCAGGGC
TCAAGGAGGAGTGAAATGGAAAGTATCATACCTATCCAGGGGACGGGATG
GACAGATGAAACGAATCGTATTCGTATTGTGCGTGACTTTGGTACTGCTC
TTCTTCGCTATCCTGTACATTCATACAGTACAAGGAAGAGAGGAAAAGCC
TGGAAAGTTTGACTTTGGGTACACCTAA

protein sequence of Gcaud2258.t1

>Gcaud2258.t1 ID=Gcaud2258.t1|Name=Gcaud2258.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=676bp
MFILLYTLFIVLHIASSAIFNTQPRDIPRPPPNPHSGSLLSSELFTDQSD
YLGLGDAAGSVVAVGDFTADRYVDLLVVPHTRVMRSLQVLVWNHHKYSFN
RGTCSSNSTFRSVLNLNSIPGASPEARIVSAAPFDANSDGFLDVLVNVLL
PDGSHVGLILRGDGFGCLRFDRVLPGLTPNMLIMDANDDMHSDIFFISDQ
SERVFYINGPPGRFTKTIWRPEPPYDQCVPTTPVNSNAFVDIDGDCEPDF
VVSSSCGLEVWFNRGLHEKSSSRWVYGQQRFKKDPHNFSNTSKALDPFKV
LILNSSVWDPSHGDGQATFADFNADGAIDIAVANRLQGEVRISYNVRRPY
YEKKLCSVDPSWHYETHVALADVHVSDTLFGSMRLQSRIRTGDFNYDGKL
DLLLIDGDSGTLSLYAGASTDSNAMWYPRPDKFVERVLFPLTGKLGSGHE
PKKKHLHFSRFSETPILYNLEDPIAAAFIDLDESGRQDLLISQRHGTRLI
WNSYQDKEDAVYFKATGVNAAHRGWKSKTGGIQAFSPLPGNTFKVSYGGR
FGRETHTCTQCPQTSVLSLQPCSCLFGITRIANYIEEMAMGGSGGVRTWT
SLMPNALAVIWPQGRRAQGGVKWKVSYLSRGRDGQMKRIVFVLCVTLVLL
FFAILYIHTVQGREEKPGKFDFGYT*

mRNA from alignment at NODE_996_length_15378_cov_4.026820:1278..3305-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2258.t1 ID=Gcaud2258.t1|Name=Gcaud2258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:1278..3305- (Gracilaria caudata M_176_S67 male)
ATGTTCATTCTTCTGTACACTTTGTTTATCGTCTTACACATAGCCTCTTC
TGCCATTTTTAACACGCAACCTCGTGACATCCCGCGTCCACCGCCAAATC
CACATTCGGGATCTCTTCTATCATCAGAATTATTCACAGACCAAAGTGAT
TACCTTGGCTTAGGAGATGCTGCTGGCTCAGTGGTAGCAGTTGGTGACTT
CACTGCCGACCGTTATGTCGACCTACTCGTCGTACCTCACACCAGAGTGA
TGCGCTCCCTTCAGGTTTTGGTATGGAATCATCATAAGTACTCTTTCAAT
CGCGGTACTTGTTCTTCTAATTCAACTTTCAGAAGTGTATTGAACCTCAA
CTCTATTCCAGGCGCATCGCCTGAGGCTAGAATTGTCTCTGCGGCTCCTT
TCGATGCCAATTCCGACGGATTTCTCGATGTCCTTGTCAATGTTCTCCTT
CCGGATGGCTCTCACGTTGGATTGATTTTACGAGGAGATGGTTTCGGGTG
TCTGCGCTTTGACAGGGTTCTTCCGGGGCTCACACCGAACATGTTAATCA
TGGATGCGAACGATGATATGCACAGTGATATCTTCTTTATTTCTGATCAA
TCCGAGCGAGTGTTTTACATAAACGGACCCCCTGGACGCTTTACGAAAAC
GATTTGGAGGCCCGAACCACCATATGATCAATGCGTTCCAACCACGCCGG
TAAACTCCAATGCCTTCGTTGATATTGATGGTGACTGTGAACCAGATTTT
GTCGTCTCCTCTTCGTGCGGACTAGAGGTGTGGTTCAATCGGGGCTTGCA
CGAAAAAAGTTCCTCACGCTGGGTTTATGGTCAGCAAAGGTTCAAGAAAG
ATCCTCACAACTTCTCAAACACGTCGAAAGCATTAGATCCGTTTAAAGTA
CTGATACTGAACTCATCGGTGTGGGATCCGTCTCATGGAGACGGCCAGGC
CACATTCGCTGATTTTAATGCAGATGGTGCAATTGACATCGCGGTTGCAA
ATCGCCTTCAAGGTGAGGTGAGGATTTCGTACAACGTTAGACGTCCATAT
TACGAGAAGAAGCTTTGCTCCGTTGACCCCTCCTGGCACTATGAAACACA
TGTTGCACTTGCAGATGTTCACGTCTCTGATACTCTGTTTGGTTCAATGC
GTCTACAGAGCCGTATTCGCACCGGAGATTTCAATTATGACGGGAAACTG
GATTTGCTTCTCATCGACGGAGATAGCGGCACTCTAAGCCTATACGCAGG
CGCTTCTACTGATTCGAACGCTATGTGGTACCCAAGACCAGACAAATTTG
TCGAACGCGTTCTTTTCCCACTGACTGGAAAGCTTGGAAGTGGGCATGAG
CCCAAAAAGAAGCATTTGCACTTCAGTAGGTTTAGTGAGACTCCAATACT
GTACAATCTGGAGGATCCTATCGCAGCTGCTTTCATTGACCTAGACGAAA
GCGGGCGGCAGGATCTTCTAATATCGCAGCGTCATGGGACCAGACTGATA
TGGAACAGTTATCAAGACAAGGAGGACGCTGTGTATTTCAAAGCAACTGG
AGTAAACGCCGCTCACAGAGGTTGGAAATCAAAGACAGGAGGGATTCAAG
CCTTTTCGCCACTGCCAGGCAACACCTTCAAGGTTTCATATGGTGGGCGC
TTTGGGCGCGAAACTCATACGTGCACGCAGTGCCCACAAACCAGCGTTCT
CTCCCTGCAACCGTGTTCATGTCTGTTTGGAATAACTCGCATCGCAAATT
ACATCGAAGAGATGGCCATGGGCGGATCAGGAGGGGTGAGAACATGGACG
AGTTTAATGCCGAATGCTCTAGCCGTGATCTGGCCACAAGGGCGCAGGGC
TCAAGGAGGAGTGAAATGGAAAGTATCATACCTATCCAGGGGACGGGATG
GACAGATGAAACGAATCGTATTCGTATTGTGCGTGACTTTGGTACTGCTC
TTCTTCGCTATCCTGTACATTCATACAGTACAAGGAAGAGAGGAAAAGCC
TGGAAAGTTTGACTTTGGGTACACCTAA

Coding sequence (CDS) from alignment at NODE_996_length_15378_cov_4.026820:1278..3305-

>Gcaud2258.t1 ID=Gcaud2258.t1|Name=Gcaud2258.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2028bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:1278..3305- (Gracilaria caudata M_176_S67 male)
ATGTTCATTCTTCTGTACACTTTGTTTATCGTCTTACACATAGCCTCTTC
TGCCATTTTTAACACGCAACCTCGTGACATCCCGCGTCCACCGCCAAATC
CACATTCGGGATCTCTTCTATCATCAGAATTATTCACAGACCAAAGTGAT
TACCTTGGCTTAGGAGATGCTGCTGGCTCAGTGGTAGCAGTTGGTGACTT
CACTGCCGACCGTTATGTCGACCTACTCGTCGTACCTCACACCAGAGTGA
TGCGCTCCCTTCAGGTTTTGGTATGGAATCATCATAAGTACTCTTTCAAT
CGCGGTACTTGTTCTTCTAATTCAACTTTCAGAAGTGTATTGAACCTCAA
CTCTATTCCAGGCGCATCGCCTGAGGCTAGAATTGTCTCTGCGGCTCCTT
TCGATGCCAATTCCGACGGATTTCTCGATGTCCTTGTCAATGTTCTCCTT
CCGGATGGCTCTCACGTTGGATTGATTTTACGAGGAGATGGTTTCGGGTG
TCTGCGCTTTGACAGGGTTCTTCCGGGGCTCACACCGAACATGTTAATCA
TGGATGCGAACGATGATATGCACAGTGATATCTTCTTTATTTCTGATCAA
TCCGAGCGAGTGTTTTACATAAACGGACCCCCTGGACGCTTTACGAAAAC
GATTTGGAGGCCCGAACCACCATATGATCAATGCGTTCCAACCACGCCGG
TAAACTCCAATGCCTTCGTTGATATTGATGGTGACTGTGAACCAGATTTT
GTCGTCTCCTCTTCGTGCGGACTAGAGGTGTGGTTCAATCGGGGCTTGCA
CGAAAAAAGTTCCTCACGCTGGGTTTATGGTCAGCAAAGGTTCAAGAAAG
ATCCTCACAACTTCTCAAACACGTCGAAAGCATTAGATCCGTTTAAAGTA
CTGATACTGAACTCATCGGTGTGGGATCCGTCTCATGGAGACGGCCAGGC
CACATTCGCTGATTTTAATGCAGATGGTGCAATTGACATCGCGGTTGCAA
ATCGCCTTCAAGGTGAGGTGAGGATTTCGTACAACGTTAGACGTCCATAT
TACGAGAAGAAGCTTTGCTCCGTTGACCCCTCCTGGCACTATGAAACACA
TGTTGCACTTGCAGATGTTCACGTCTCTGATACTCTGTTTGGTTCAATGC
GTCTACAGAGCCGTATTCGCACCGGAGATTTCAATTATGACGGGAAACTG
GATTTGCTTCTCATCGACGGAGATAGCGGCACTCTAAGCCTATACGCAGG
CGCTTCTACTGATTCGAACGCTATGTGGTACCCAAGACCAGACAAATTTG
TCGAACGCGTTCTTTTCCCACTGACTGGAAAGCTTGGAAGTGGGCATGAG
CCCAAAAAGAAGCATTTGCACTTCAGTAGGTTTAGTGAGACTCCAATACT
GTACAATCTGGAGGATCCTATCGCAGCTGCTTTCATTGACCTAGACGAAA
GCGGGCGGCAGGATCTTCTAATATCGCAGCGTCATGGGACCAGACTGATA
TGGAACAGTTATCAAGACAAGGAGGACGCTGTGTATTTCAAAGCAACTGG
AGTAAACGCCGCTCACAGAGGTTGGAAATCAAAGACAGGAGGGATTCAAG
CCTTTTCGCCACTGCCAGGCAACACCTTCAAGGTTTCATATGGTGGGCGC
TTTGGGCGCGAAACTCATACGTGCACGCAGTGCCCACAAACCAGCGTTCT
CTCCCTGCAACCGTGTTCATGTCTGTTTGGAATAACTCGCATCGCAAATT
ACATCGAAGAGATGGCCATGGGCGGATCAGGAGGGGTGAGAACATGGACG
AGTTTAATGCCGAATGCTCTAGCCGTGATCTGGCCACAAGGGCGCAGGGC
TCAAGGAGGAGTGAAATGGAAAGTATCATACCTATCCAGGGGACGGGATG
GACAGATGAAACGAATCGTATTCGTATTGTGCGTGACTTTGGTACTGCTC
TTCTTCGCTATCCTGTACATTCATACAGTACAAGGAAGAGAGGAAAAGCC
TGGAAAGTTTGACTTTGGGTACACCTAA