Gcaud2256.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2256.t1
Unique Name	Gcaud2256.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	562

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1006_length_15184_cov_4.802690	contig	NODE_1006_length_15184_cov_4.802690:10974..12659 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	756272.Plabr_3820
PFAMs	An_peroxidase
Max annot lvl	203682\|Planctomycetes
Evalue	2.29e-86
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,2J53M@203682\|Planctomycetes
Description	Animal haem peroxidase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2256	Gcaud2256	Gracilaria caudata M_176_S67 male	gene	NODE_1006_length_15184_cov_4.802690 10974..12659 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2256.t1.start1	Gcaud2256.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1006_length_15184_cov_4.802690 10974..10976 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2256.t1.CDS1	Gcaud2256.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1006_length_15184_cov_4.802690 10974..12659 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2256.t1.exon1	Gcaud2256.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1006_length_15184_cov_4.802690 10974..12659 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2256.t1.stop1	Gcaud2256.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1006_length_15184_cov_4.802690 12657..12659 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2256.t1	Gcaud2256.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1006_length_15184_cov_4.802690 10974..12659 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1006_length_15184_cov_4.802690:10974..12659+
coding sequence from alignment at NODE_1006_length_15184_cov_4.802690:10974..12659+

mRNA sequence

>Gcaud2256.t1 ID=Gcaud2256.t1|Name=Gcaud2256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=562bp
MVQFSTIAAIFGAALVTLVTAQQAKPIGTGAELLKPLPPAKDSPILGISE
ECAQARVRTLSGRCTSAIDPTLGEARRAQFSYFDVNSVNLADEGLESPRL
ISNIVSDQEVDTSNSQGLNEVFTFFGQFIDHDFALTPLSEDPNDELEIEV
PANDPDLPQKPLEFTRSERAPIFEGSSVERPITVLSSALDLSTVYGVDER
RNTFLRVANSCRLKTSNGNLLPFNTGNFVNSPNTSPAFFIGGDTRVSETP
MLTVMHTIWVREHNRLCDIIEDAFPGFTPEQQHEAARAINIAQYQKIVYD
EWLPAILGSPLPAYAGYNPQVDPTISLEFTTAAFRLGHTLVGTDVTRIDS
SGQPLPPVPAEQMFFIPSAQFSSSDLEDFVRGATSTRAQEFDAKAVDILR
NFLFENVPEEEGIDLIALNLQRSRDHNVAKYNRLREFFTGSRANSFADIS
SDPSVAAKLEEAYEDVDLVEAWIGLMAEDKAPRSGVGRTLGAFLRTEFGR
LRDGDQFFFLLRNQIPAIVLDTLPEVRNDIFARRTLFNRILLRNTNIGSR
FLSRGRNAFLV*

spliced messenger RNA

>Gcaud2256.t1 ID=Gcaud2256.t1|Name=Gcaud2256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at NODE_1006_length_15184_cov_4.802690:10974..12659+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCAGTTTTCCACCATCGCCGCCATCTTTGGGGCTGCTCTTGTGAC
GCTTGTCACAGCTCAGCAGGCGAAGCCAATTGGCACAGGTGCAGAACTTC
TCAAGCCACTACCACCGGCTAAGGATTCGCCGATACTCGGAATATCAGAA
GAGTGTGCCCAAGCTCGAGTTCGAACCCTCTCTGGTAGATGTACTTCTGC
AATTGATCCTACTCTCGGAGAAGCTCGTCGTGCACAATTCAGTTACTTCG
ACGTCAATTCTGTCAATCTCGCAGATGAAGGTCTCGAAAGCCCGCGACTG
ATCTCTAACATTGTGAGCGATCAAGAAGTTGATACTTCGAACTCCCAGGG
TCTCAACGAAGTGTTCACTTTCTTCGGACAGTTCATCGATCATGACTTCG
CCCTTACGCCGCTTTCTGAAGATCCAAACGACGAGCTTGAGATTGAGGTA
CCTGCCAACGATCCTGATCTTCCTCAAAAGCCGCTGGAATTCACTCGTTC
CGAGCGTGCACCAATTTTTGAAGGCTCTTCTGTGGAACGCCCCATCACAG
TGCTTTCTTCTGCTCTGGACCTTTCTACCGTGTATGGTGTTGATGAACGG
CGTAACACTTTCCTTCGAGTTGCCAATTCATGCCGCCTTAAGACATCTAA
TGGAAATCTCCTTCCGTTCAACACCGGTAACTTTGTCAACTCTCCAAACA
CTTCGCCAGCGTTCTTCATTGGCGGCGATACGCGAGTCAGTGAGACGCCA
ATGCTCACTGTGATGCATACCATCTGGGTCCGCGAACACAATCGTCTTTG
CGATATTATCGAAGATGCATTCCCAGGCTTTACTCCGGAGCAGCAGCATG
AGGCGGCCCGCGCGATCAACATCGCCCAGTACCAGAAGATCGTCTATGAT
GAGTGGCTCCCAGCTATCCTTGGCTCTCCTCTGCCTGCTTATGCTGGATA
TAACCCACAAGTGGACCCGACCATCAGCCTTGAATTTACTACAGCCGCGT
TCCGTCTCGGCCATACCCTTGTTGGCACCGATGTGACCAGAATCGACAGT
AGCGGTCAACCTCTCCCGCCTGTGCCGGCTGAACAGATGTTCTTCATCCC
GAGCGCGCAGTTTTCTTCATCGGATCTTGAGGACTTCGTTCGAGGCGCAA
CTTCTACTCGTGCTCAAGAATTTGATGCGAAGGCAGTCGATATTCTTAGG
AATTTCTTGTTTGAGAACGTTCCAGAAGAAGAGGGCATTGATTTGATCGC
ACTCAACCTGCAGCGCTCCCGCGATCACAACGTTGCGAAATATAATCGGC
TGAGAGAATTCTTCACTGGATCACGTGCCAACTCTTTCGCAGATATCTCT
AGCGACCCCTCTGTAGCAGCGAAGTTGGAAGAAGCATATGAGGATGTGGA
CCTTGTAGAAGCGTGGATCGGATTGATGGCTGAAGATAAGGCCCCCAGAT
CTGGAGTGGGCCGCACTCTAGGAGCATTTTTGAGAACGGAATTCGGCCGT
CTGCGTGATGGAGATCAATTCTTCTTCCTTCTCCGGAATCAGATTCCAGC
TATTGTACTAGATACTCTCCCTGAAGTCAGAAATGACATCTTCGCTCGAA
GGACTTTGTTCAATCGTATTCTTCTCAGGAATACCAACATTGGCAGCCGC
TTCCTCAGCCGTGGTCGCAATGCTTTTCTTGTCTAA

protein sequence of Gcaud2256.t1

>Gcaud2256.t1 ID=Gcaud2256.t1|Name=Gcaud2256.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=562bp
MVQFSTIAAIFGAALVTLVTAQQAKPIGTGAELLKPLPPAKDSPILGISE
ECAQARVRTLSGRCTSAIDPTLGEARRAQFSYFDVNSVNLADEGLESPRL
ISNIVSDQEVDTSNSQGLNEVFTFFGQFIDHDFALTPLSEDPNDELEIEV
PANDPDLPQKPLEFTRSERAPIFEGSSVERPITVLSSALDLSTVYGVDER
RNTFLRVANSCRLKTSNGNLLPFNTGNFVNSPNTSPAFFIGGDTRVSETP
MLTVMHTIWVREHNRLCDIIEDAFPGFTPEQQHEAARAINIAQYQKIVYD
EWLPAILGSPLPAYAGYNPQVDPTISLEFTTAAFRLGHTLVGTDVTRIDS
SGQPLPPVPAEQMFFIPSAQFSSSDLEDFVRGATSTRAQEFDAKAVDILR
NFLFENVPEEEGIDLIALNLQRSRDHNVAKYNRLREFFTGSRANSFADIS
SDPSVAAKLEEAYEDVDLVEAWIGLMAEDKAPRSGVGRTLGAFLRTEFGR
LRDGDQFFFLLRNQIPAIVLDTLPEVRNDIFARRTLFNRILLRNTNIGSR
FLSRGRNAFLV*

mRNA from alignment at NODE_1006_length_15184_cov_4.802690:10974..12659+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2256.t1 ID=Gcaud2256.t1|Name=Gcaud2256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at NODE_1006_length_15184_cov_4.802690:10974..12659+ (Gracilaria caudata M_176_S67 male)
ATGGTCCAGTTTTCCACCATCGCCGCCATCTTTGGGGCTGCTCTTGTGAC
GCTTGTCACAGCTCAGCAGGCGAAGCCAATTGGCACAGGTGCAGAACTTC
TCAAGCCACTACCACCGGCTAAGGATTCGCCGATACTCGGAATATCAGAA
GAGTGTGCCCAAGCTCGAGTTCGAACCCTCTCTGGTAGATGTACTTCTGC
AATTGATCCTACTCTCGGAGAAGCTCGTCGTGCACAATTCAGTTACTTCG
ACGTCAATTCTGTCAATCTCGCAGATGAAGGTCTCGAAAGCCCGCGACTG
ATCTCTAACATTGTGAGCGATCAAGAAGTTGATACTTCGAACTCCCAGGG
TCTCAACGAAGTGTTCACTTTCTTCGGACAGTTCATCGATCATGACTTCG
CCCTTACGCCGCTTTCTGAAGATCCAAACGACGAGCTTGAGATTGAGGTA
CCTGCCAACGATCCTGATCTTCCTCAAAAGCCGCTGGAATTCACTCGTTC
CGAGCGTGCACCAATTTTTGAAGGCTCTTCTGTGGAACGCCCCATCACAG
TGCTTTCTTCTGCTCTGGACCTTTCTACCGTGTATGGTGTTGATGAACGG
CGTAACACTTTCCTTCGAGTTGCCAATTCATGCCGCCTTAAGACATCTAA
TGGAAATCTCCTTCCGTTCAACACCGGTAACTTTGTCAACTCTCCAAACA
CTTCGCCAGCGTTCTTCATTGGCGGCGATACGCGAGTCAGTGAGACGCCA
ATGCTCACTGTGATGCATACCATCTGGGTCCGCGAACACAATCGTCTTTG
CGATATTATCGAAGATGCATTCCCAGGCTTTACTCCGGAGCAGCAGCATG
AGGCGGCCCGCGCGATCAACATCGCCCAGTACCAGAAGATCGTCTATGAT
GAGTGGCTCCCAGCTATCCTTGGCTCTCCTCTGCCTGCTTATGCTGGATA
TAACCCACAAGTGGACCCGACCATCAGCCTTGAATTTACTACAGCCGCGT
TCCGTCTCGGCCATACCCTTGTTGGCACCGATGTGACCAGAATCGACAGT
AGCGGTCAACCTCTCCCGCCTGTGCCGGCTGAACAGATGTTCTTCATCCC
GAGCGCGCAGTTTTCTTCATCGGATCTTGAGGACTTCGTTCGAGGCGCAA
CTTCTACTCGTGCTCAAGAATTTGATGCGAAGGCAGTCGATATTCTTAGG
AATTTCTTGTTTGAGAACGTTCCAGAAGAAGAGGGCATTGATTTGATCGC
ACTCAACCTGCAGCGCTCCCGCGATCACAACGTTGCGAAATATAATCGGC
TGAGAGAATTCTTCACTGGATCACGTGCCAACTCTTTCGCAGATATCTCT
AGCGACCCCTCTGTAGCAGCGAAGTTGGAAGAAGCATATGAGGATGTGGA
CCTTGTAGAAGCGTGGATCGGATTGATGGCTGAAGATAAGGCCCCCAGAT
CTGGAGTGGGCCGCACTCTAGGAGCATTTTTGAGAACGGAATTCGGCCGT
CTGCGTGATGGAGATCAATTCTTCTTCCTTCTCCGGAATCAGATTCCAGC
TATTGTACTAGATACTCTCCCTGAAGTCAGAAATGACATCTTCGCTCGAA
GGACTTTGTTCAATCGTATTCTTCTCAGGAATACCAACATTGGCAGCCGC
TTCCTCAGCCGTGGTCGCAATGCTTTTCTTGTCTAA

Coding sequence (CDS) from alignment at NODE_1006_length_15184_cov_4.802690:10974..12659+

>Gcaud2256.t1 ID=Gcaud2256.t1|Name=Gcaud2256.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1686bp|location=Sequence derived from alignment at NODE_1006_length_15184_cov_4.802690:10974..12659+ (Gracilaria caudata M_176_S67 male)
ATGGTCCAGTTTTCCACCATCGCCGCCATCTTTGGGGCTGCTCTTGTGAC
GCTTGTCACAGCTCAGCAGGCGAAGCCAATTGGCACAGGTGCAGAACTTC
TCAAGCCACTACCACCGGCTAAGGATTCGCCGATACTCGGAATATCAGAA
GAGTGTGCCCAAGCTCGAGTTCGAACCCTCTCTGGTAGATGTACTTCTGC
AATTGATCCTACTCTCGGAGAAGCTCGTCGTGCACAATTCAGTTACTTCG
ACGTCAATTCTGTCAATCTCGCAGATGAAGGTCTCGAAAGCCCGCGACTG
ATCTCTAACATTGTGAGCGATCAAGAAGTTGATACTTCGAACTCCCAGGG
TCTCAACGAAGTGTTCACTTTCTTCGGACAGTTCATCGATCATGACTTCG
CCCTTACGCCGCTTTCTGAAGATCCAAACGACGAGCTTGAGATTGAGGTA
CCTGCCAACGATCCTGATCTTCCTCAAAAGCCGCTGGAATTCACTCGTTC
CGAGCGTGCACCAATTTTTGAAGGCTCTTCTGTGGAACGCCCCATCACAG
TGCTTTCTTCTGCTCTGGACCTTTCTACCGTGTATGGTGTTGATGAACGG
CGTAACACTTTCCTTCGAGTTGCCAATTCATGCCGCCTTAAGACATCTAA
TGGAAATCTCCTTCCGTTCAACACCGGTAACTTTGTCAACTCTCCAAACA
CTTCGCCAGCGTTCTTCATTGGCGGCGATACGCGAGTCAGTGAGACGCCA
ATGCTCACTGTGATGCATACCATCTGGGTCCGCGAACACAATCGTCTTTG
CGATATTATCGAAGATGCATTCCCAGGCTTTACTCCGGAGCAGCAGCATG
AGGCGGCCCGCGCGATCAACATCGCCCAGTACCAGAAGATCGTCTATGAT
GAGTGGCTCCCAGCTATCCTTGGCTCTCCTCTGCCTGCTTATGCTGGATA
TAACCCACAAGTGGACCCGACCATCAGCCTTGAATTTACTACAGCCGCGT
TCCGTCTCGGCCATACCCTTGTTGGCACCGATGTGACCAGAATCGACAGT
AGCGGTCAACCTCTCCCGCCTGTGCCGGCTGAACAGATGTTCTTCATCCC
GAGCGCGCAGTTTTCTTCATCGGATCTTGAGGACTTCGTTCGAGGCGCAA
CTTCTACTCGTGCTCAAGAATTTGATGCGAAGGCAGTCGATATTCTTAGG
AATTTCTTGTTTGAGAACGTTCCAGAAGAAGAGGGCATTGATTTGATCGC
ACTCAACCTGCAGCGCTCCCGCGATCACAACGTTGCGAAATATAATCGGC
TGAGAGAATTCTTCACTGGATCACGTGCCAACTCTTTCGCAGATATCTCT
AGCGACCCCTCTGTAGCAGCGAAGTTGGAAGAAGCATATGAGGATGTGGA
CCTTGTAGAAGCGTGGATCGGATTGATGGCTGAAGATAAGGCCCCCAGAT
CTGGAGTGGGCCGCACTCTAGGAGCATTTTTGAGAACGGAATTCGGCCGT
CTGCGTGATGGAGATCAATTCTTCTTCCTTCTCCGGAATCAGATTCCAGC
TATTGTACTAGATACTCTCCCTGAAGTCAGAAATGACATCTTCGCTCGAA
GGACTTTGTTCAATCGTATTCTTCTCAGGAATACCAACATTGGCAGCCGC
TTCCTCAGCCGTGGTCGCAATGCTTTTCTTGTCTAA