Gcaud2249.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2249.t1
Unique NameGcaud2249.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_813_length_17642_cov_4.699447contigNODE_813_length_17642_cov_4.699447:1311..1898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1274.HX89_06470
PFAMsAPH
Max annot lvl201174|Actinobacteria
Evalue5.04e-07
EggNOG OGsCOG3178@1|root,COG3178@2|Bacteria,2GNRB@201174|Actinobacteria,1ZWCB@145357|Dermacoccaceae
DescriptionPhosphotransferase enzyme family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2249Gcaud2249Gracilaria caudata M_176_S67 malegeneNODE_813_length_17642_cov_4.699447 1311..1898 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2249.t1.stop1Gcaud2249.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_813_length_17642_cov_4.699447 1311..1313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2249.t1.CDS1Gcaud2249.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_813_length_17642_cov_4.699447 1311..1898 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2249.t1.exon1Gcaud2249.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_813_length_17642_cov_4.699447 1311..1898 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2249.t1.start1Gcaud2249.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_813_length_17642_cov_4.699447 1896..1898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2249.t1Gcaud2249.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_813_length_17642_cov_4.699447 1311..1898 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2249.t1 ID=Gcaud2249.t1|Name=Gcaud2249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=196bp
MPHLEDLMESGIKTFSMEWTIANVEKVLRYPGSQYYEKTCEEVSAQHVSS
IRRLFQELHSENLPMTLVHGDIHLGNIAKQQNPPSSPPTYRIFDWGSAFL
GNPLLDVYVLLSSMETNTEDMDRALEQYMHIWRWKMPIVYFKRMLHIAGL
CYWFLDLHHTIQWQQKVRGEEIQSFSGIDQRIARLITILQVMEAR*
back to top

spliced messenger RNA

>Gcaud2249.t1 ID=Gcaud2249.t1|Name=Gcaud2249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=588bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:1311..1898- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACACTTGGAAGATCTTATGGAATCTGGCATAAAGACTTTCAGCAT
GGAGTGGACAATAGCCAACGTGGAGAAAGTCTTACGATATCCAGGTTCAC
AATACTACGAAAAGACATGTGAAGAAGTTTCTGCCCAACACGTCTCGTCA
ATTAGACGGCTGTTTCAGGAACTGCACTCCGAAAATCTCCCAATGACTTT
AGTACATGGAGATATTCACCTTGGCAACATTGCGAAGCAACAAAACCCGC
CAAGTTCGCCACCGACCTACCGAATTTTTGATTGGGGATCTGCATTTCTG
GGCAACCCGCTTCTCGACGTCTATGTGCTTTTGAGTAGCATGGAAACAAA
CACAGAGGACATGGACCGGGCTCTCGAACAATATATGCACATATGGAGGT
GGAAAATGCCAATTGTTTACTTCAAACGGATGTTGCACATTGCTGGTCTT
TGTTACTGGTTCTTGGACCTCCATCACACCATACAATGGCAACAGAAAGT
ACGGGGTGAAGAAATCCAAAGCTTCTCCGGAATAGACCAACGGATTGCGA
GGTTGATTACAATCTTGCAAGTAATGGAAGCTCGTTAA
back to top

protein sequence of Gcaud2249.t1

>Gcaud2249.t1 ID=Gcaud2249.t1|Name=Gcaud2249.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=196bp
MPHLEDLMESGIKTFSMEWTIANVEKVLRYPGSQYYEKTCEEVSAQHVSS
IRRLFQELHSENLPMTLVHGDIHLGNIAKQQNPPSSPPTYRIFDWGSAFL
GNPLLDVYVLLSSMETNTEDMDRALEQYMHIWRWKMPIVYFKRMLHIAGL
CYWFLDLHHTIQWQQKVRGEEIQSFSGIDQRIARLITILQVMEAR*
back to top

mRNA from alignment at NODE_813_length_17642_cov_4.699447:1311..1898-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2249.t1 ID=Gcaud2249.t1|Name=Gcaud2249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=588bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:1311..1898- (Gracilaria caudata M_176_S67 male)
ATGCCACACTTGGAAGATCTTATGGAATCTGGCATAAAGACTTTCAGCAT
GGAGTGGACAATAGCCAACGTGGAGAAAGTCTTACGATATCCAGGTTCAC
AATACTACGAAAAGACATGTGAAGAAGTTTCTGCCCAACACGTCTCGTCA
ATTAGACGGCTGTTTCAGGAACTGCACTCCGAAAATCTCCCAATGACTTT
AGTACATGGAGATATTCACCTTGGCAACATTGCGAAGCAACAAAACCCGC
CAAGTTCGCCACCGACCTACCGAATTTTTGATTGGGGATCTGCATTTCTG
GGCAACCCGCTTCTCGACGTCTATGTGCTTTTGAGTAGCATGGAAACAAA
CACAGAGGACATGGACCGGGCTCTCGAACAATATATGCACATATGGAGGT
GGAAAATGCCAATTGTTTACTTCAAACGGATGTTGCACATTGCTGGTCTT
TGTTACTGGTTCTTGGACCTCCATCACACCATACAATGGCAACAGAAAGT
ACGGGGTGAAGAAATCCAAAGCTTCTCCGGAATAGACCAACGGATTGCGA
GGTTGATTACAATCTTGCAAGTAATGGAAGCTCGTTAA
back to top

Coding sequence (CDS) from alignment at NODE_813_length_17642_cov_4.699447:1311..1898-

>Gcaud2249.t1 ID=Gcaud2249.t1|Name=Gcaud2249.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=588bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:1311..1898- (Gracilaria caudata M_176_S67 male)
ATGCCACACTTGGAAGATCTTATGGAATCTGGCATAAAGACTTTCAGCAT
GGAGTGGACAATAGCCAACGTGGAGAAAGTCTTACGATATCCAGGTTCAC
AATACTACGAAAAGACATGTGAAGAAGTTTCTGCCCAACACGTCTCGTCA
ATTAGACGGCTGTTTCAGGAACTGCACTCCGAAAATCTCCCAATGACTTT
AGTACATGGAGATATTCACCTTGGCAACATTGCGAAGCAACAAAACCCGC
CAAGTTCGCCACCGACCTACCGAATTTTTGATTGGGGATCTGCATTTCTG
GGCAACCCGCTTCTCGACGTCTATGTGCTTTTGAGTAGCATGGAAACAAA
CACAGAGGACATGGACCGGGCTCTCGAACAATATATGCACATATGGAGGT
GGAAAATGCCAATTGTTTACTTCAAACGGATGTTGCACATTGCTGGTCTT
TGTTACTGGTTCTTGGACCTCCATCACACCATACAATGGCAACAGAAAGT
ACGGGGTGAAGAAATCCAAAGCTTCTCCGGAATAGACCAACGGATTGCGA
GGTTGATTACAATCTTGCAAGTAATGGAAGCTCGTTAA
back to top