Gcaud2248.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2248.t1
Unique NameGcaud2248.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_813_length_17642_cov_4.699447contigNODE_813_length_17642_cov_4.699447:847..1260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2248Gcaud2248Gracilaria caudata M_176_S67 malegeneNODE_813_length_17642_cov_4.699447 847..1260 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2248.t1.start1Gcaud2248.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_813_length_17642_cov_4.699447 847..849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2248.t1.CDS1Gcaud2248.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_813_length_17642_cov_4.699447 847..1260 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2248.t1.exon1Gcaud2248.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_813_length_17642_cov_4.699447 847..1260 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2248.t1.stop1Gcaud2248.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_813_length_17642_cov_4.699447 1258..1260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2248.t1Gcaud2248.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_813_length_17642_cov_4.699447 847..1260 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2248.t1 ID=Gcaud2248.t1|Name=Gcaud2248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=138bp
MMPRTESDILKSFICYKDKNYRTAQIRDTNLQTIIAGLWEQFSELSERVA
ANIREQVDCSEDSIETVLETTVAELVSSAKVFCEFFLNRKTAFWERHEAM
WRLLSQGKLEDDGNREQPGNPSDCERSIAGSRSTVIS*
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spliced messenger RNA

>Gcaud2248.t1 ID=Gcaud2248.t1|Name=Gcaud2248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:847..1260+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCAAGGACGGAAAGCGACATCTTAAAGTCCTTCATATGCTACAA
GGACAAAAACTACCGTACAGCACAGATACGAGACACTAATCTACAGACCA
TAATCGCAGGATTATGGGAACAGTTCTCGGAGTTGTCCGAGCGGGTCGCG
GCAAACATTCGAGAGCAAGTGGATTGCTCCGAGGACTCTATCGAAACAGT
TCTGGAGACGACTGTCGCTGAACTTGTCTCCAGCGCGAAGGTGTTTTGCG
AATTTTTCCTAAATCGTAAAACTGCCTTCTGGGAAAGGCATGAAGCCATG
TGGAGATTGCTTTCGCAGGGAAAGTTGGAAGATGATGGAAACCGTGAACA
ACCTGGAAACCCCTCAGACTGTGAACGTTCTATCGCGGGATCTCGGAGCA
CCGTGATATCCTAA
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protein sequence of Gcaud2248.t1

>Gcaud2248.t1 ID=Gcaud2248.t1|Name=Gcaud2248.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=138bp
MMPRTESDILKSFICYKDKNYRTAQIRDTNLQTIIAGLWEQFSELSERVA
ANIREQVDCSEDSIETVLETTVAELVSSAKVFCEFFLNRKTAFWERHEAM
WRLLSQGKLEDDGNREQPGNPSDCERSIAGSRSTVIS*
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mRNA from alignment at NODE_813_length_17642_cov_4.699447:847..1260+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2248.t1 ID=Gcaud2248.t1|Name=Gcaud2248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:847..1260+ (Gracilaria caudata M_176_S67 male)
ATGATGCCAAGGACGGAAAGCGACATCTTAAAGTCCTTCATATGCTACAA
GGACAAAAACTACCGTACAGCACAGATACGAGACACTAATCTACAGACCA
TAATCGCAGGATTATGGGAACAGTTCTCGGAGTTGTCCGAGCGGGTCGCG
GCAAACATTCGAGAGCAAGTGGATTGCTCCGAGGACTCTATCGAAACAGT
TCTGGAGACGACTGTCGCTGAACTTGTCTCCAGCGCGAAGGTGTTTTGCG
AATTTTTCCTAAATCGTAAAACTGCCTTCTGGGAAAGGCATGAAGCCATG
TGGAGATTGCTTTCGCAGGGAAAGTTGGAAGATGATGGAAACCGTGAACA
ACCTGGAAACCCCTCAGACTGTGAACGTTCTATCGCGGGATCTCGGAGCA
CCGTGATATCCTAA
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Coding sequence (CDS) from alignment at NODE_813_length_17642_cov_4.699447:847..1260+

>Gcaud2248.t1 ID=Gcaud2248.t1|Name=Gcaud2248.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=414bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:847..1260+ (Gracilaria caudata M_176_S67 male)
ATGATGCCAAGGACGGAAAGCGACATCTTAAAGTCCTTCATATGCTACAA
GGACAAAAACTACCGTACAGCACAGATACGAGACACTAATCTACAGACCA
TAATCGCAGGATTATGGGAACAGTTCTCGGAGTTGTCCGAGCGGGTCGCG
GCAAACATTCGAGAGCAAGTGGATTGCTCCGAGGACTCTATCGAAACAGT
TCTGGAGACGACTGTCGCTGAACTTGTCTCCAGCGCGAAGGTGTTTTGCG
AATTTTTCCTAAATCGTAAAACTGCCTTCTGGGAAAGGCATGAAGCCATG
TGGAGATTGCTTTCGCAGGGAAAGTTGGAAGATGATGGAAACCGTGAACA
ACCTGGAAACCCCTCAGACTGTGAACGTTCTATCGCGGGATCTCGGAGCA
CCGTGATATCCTAA
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