Gcaud2246.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2246.t1
Unique Name	Gcaud2246.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1427_length_10755_cov_3.958177	contig	NODE_1427_length_10755_cov_3.958177:9236..10603 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX32173
PFAMs	cNMP_binding
Max annot lvl	2759\|Eukaryota
Evalue	2.47e-95
EggNOG OGs	28KCE@1\|root,2QSTD@2759\|Eukaryota
Description	Cyclic nucleotide-monophosphate binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2246	Gcaud2246	Gracilaria caudata M_176_S67 male	gene	NODE_1427_length_10755_cov_3.958177 9236..10603 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2246.t1.start1	Gcaud2246.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1427_length_10755_cov_3.958177 9236..9238 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2246.t1.CDS1	Gcaud2246.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1427_length_10755_cov_3.958177 9236..10603 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2246.t1.exon1	Gcaud2246.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1427_length_10755_cov_3.958177 9236..10603 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2246.t1.stop1	Gcaud2246.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1427_length_10755_cov_3.958177 10601..10603 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2246.t1	Gcaud2246.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1427_length_10755_cov_3.958177 9236..10603 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1427_length_10755_cov_3.958177:9236..10603+
coding sequence from alignment at NODE_1427_length_10755_cov_3.958177:9236..10603+

mRNA sequence

>Gcaud2246.t1 ID=Gcaud2246.t1|Name=Gcaud2246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=456bp
MPAAAASTPSSTPSQSLSDNDVRDAVDRLAHTPMFHRCQPSQLVALAREM
HKVVFRRGDLIVTQNQPADRMLVIADGYARRIRMGSDGVERQLKTAHADT
ISELYITAGDPVYASAKCVTRSCTAYAMSRAAFRSHLQRSPVLSTQVIES
LSEDVLHKTRQFRTPLLSQRSNEINLSAVAVASVVESYYRSALNAILNRR
LSGISAPLFPNMHVQVPARVVYITGFKSLRAILDRDIDPDQLNSHPARVA
ARFGKTIAPGVVMTPISSILEASNVGHVNSEPLLRRSFRGSIPRLGREIV
FGVGLNQLSDYMEERYRPLISSALAANMAGSLSAGVVSGYLSHVPHNLST
YKLLNPHQSYSELFQLFVDKSVPEHLIPKALPPSVVPVAKAALACLFPRG
VLIRTAQICGSFAILNGIILLIETDSRNRMTKAIESVDEEIETEAKIEVA
RSQSE*

spliced messenger RNA

>Gcaud2246.t1 ID=Gcaud2246.t1|Name=Gcaud2246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:9236..10603+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCTGCCGCTGCGTCCACGCCGTCTTCCACACCGTCTCAATCGCT
CTCCGACAACGATGTTCGCGACGCGGTTGACCGCCTGGCGCACACGCCCA
TGTTTCATCGATGCCAACCGTCTCAGTTGGTTGCGCTCGCCCGCGAAATG
CACAAGGTGGTGTTCCGGCGGGGCGATCTAATCGTCACGCAGAATCAGCC
TGCAGACCGTATGCTCGTTATTGCTGATGGCTACGCACGTCGCATCAGAA
TGGGTTCCGATGGAGTGGAGAGACAACTGAAGACCGCCCACGCTGATACC
ATTTCTGAGCTTTATATAACCGCCGGTGATCCCGTTTATGCTTCGGCAAA
GTGTGTTACCCGCTCCTGTACCGCGTATGCCATGAGTCGAGCTGCGTTTC
GCTCGCACTTGCAACGCAGCCCTGTGTTGAGCACGCAGGTGATTGAGTCG
CTTTCCGAAGATGTGCTCCACAAAACGCGCCAGTTTCGTACCCCGCTTTT
GTCGCAACGTTCAAATGAAATCAATCTTAGTGCCGTTGCTGTCGCGTCTG
TGGTAGAGTCCTACTACAGATCGGCACTTAACGCCATCCTTAATCGTCGT
CTTAGCGGTATATCAGCTCCACTCTTTCCCAACATGCATGTGCAAGTGCC
GGCTCGTGTAGTGTACATCACTGGATTCAAGAGCTTGCGCGCCATTTTGG
ATCGTGACATTGATCCAGACCAACTGAATAGCCACCCTGCAAGAGTGGCT
GCCAGATTTGGTAAGACCATCGCACCAGGTGTTGTCATGACGCCCATCTC
AAGCATTCTGGAGGCTTCTAACGTCGGTCATGTCAACTCCGAACCTCTTC
TTCGGAGGAGTTTTCGAGGTTCTATCCCGCGTCTTGGCAGAGAGATAGTG
TTCGGAGTGGGGCTCAACCAACTTTCGGATTACATGGAGGAGAGATATCG
TCCACTAATATCAAGCGCACTTGCTGCCAACATGGCCGGTTCGCTTAGTG
CCGGAGTTGTATCAGGGTATCTATCTCATGTTCCGCACAACCTCAGCACA
TACAAGCTTCTCAATCCGCATCAGTCGTACTCCGAATTGTTTCAGTTGTT
TGTCGACAAATCTGTGCCAGAGCATCTTATCCCAAAGGCGCTGCCACCAT
CCGTTGTACCTGTTGCCAAAGCTGCACTGGCATGCCTGTTTCCCAGaggc
gttctaattcgtacagctcagatatgcggatcgtttgcgattctgaacgg
tatcattctactcatagaaactgatagtagaaaccgcatgacgAAAGCCA
TCGAATCAGTCGACGAAGAAATCGAAACGGAAGCAAAGATTGAAGTAGCG
CGTTCTCAATCGGAATAA

protein sequence of Gcaud2246.t1

>Gcaud2246.t1 ID=Gcaud2246.t1|Name=Gcaud2246.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=456bp
MPAAAASTPSSTPSQSLSDNDVRDAVDRLAHTPMFHRCQPSQLVALAREM
HKVVFRRGDLIVTQNQPADRMLVIADGYARRIRMGSDGVERQLKTAHADT
ISELYITAGDPVYASAKCVTRSCTAYAMSRAAFRSHLQRSPVLSTQVIES
LSEDVLHKTRQFRTPLLSQRSNEINLSAVAVASVVESYYRSALNAILNRR
LSGISAPLFPNMHVQVPARVVYITGFKSLRAILDRDIDPDQLNSHPARVA
ARFGKTIAPGVVMTPISSILEASNVGHVNSEPLLRRSFRGSIPRLGREIV
FGVGLNQLSDYMEERYRPLISSALAANMAGSLSAGVVSGYLSHVPHNLST
YKLLNPHQSYSELFQLFVDKSVPEHLIPKALPPSVVPVAKAALACLFPRG
VLIRTAQICGSFAILNGIILLIETDSRNRMTKAIESVDEEIETEAKIEVA
RSQSE*

mRNA from alignment at NODE_1427_length_10755_cov_3.958177:9236..10603+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2246.t1 ID=Gcaud2246.t1|Name=Gcaud2246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:9236..10603+ (Gracilaria caudata M_176_S67 male)
ATGCCGGCTGCCGCTGCGTCCACGCCGTCTTCCACACCGTCTCAATCGCT
CTCCGACAACGATGTTCGCGACGCGGTTGACCGCCTGGCGCACACGCCCA
TGTTTCATCGATGCCAACCGTCTCAGTTGGTTGCGCTCGCCCGCGAAATG
CACAAGGTGGTGTTCCGGCGGGGCGATCTAATCGTCACGCAGAATCAGCC
TGCAGACCGTATGCTCGTTATTGCTGATGGCTACGCACGTCGCATCAGAA
TGGGTTCCGATGGAGTGGAGAGACAACTGAAGACCGCCCACGCTGATACC
ATTTCTGAGCTTTATATAACCGCCGGTGATCCCGTTTATGCTTCGGCAAA
GTGTGTTACCCGCTCCTGTACCGCGTATGCCATGAGTCGAGCTGCGTTTC
GCTCGCACTTGCAACGCAGCCCTGTGTTGAGCACGCAGGTGATTGAGTCG
CTTTCCGAAGATGTGCTCCACAAAACGCGCCAGTTTCGTACCCCGCTTTT
GTCGCAACGTTCAAATGAAATCAATCTTAGTGCCGTTGCTGTCGCGTCTG
TGGTAGAGTCCTACTACAGATCGGCACTTAACGCCATCCTTAATCGTCGT
CTTAGCGGTATATCAGCTCCACTCTTTCCCAACATGCATGTGCAAGTGCC
GGCTCGTGTAGTGTACATCACTGGATTCAAGAGCTTGCGCGCCATTTTGG
ATCGTGACATTGATCCAGACCAACTGAATAGCCACCCTGCAAGAGTGGCT
GCCAGATTTGGTAAGACCATCGCACCAGGTGTTGTCATGACGCCCATCTC
AAGCATTCTGGAGGCTTCTAACGTCGGTCATGTCAACTCCGAACCTCTTC
TTCGGAGGAGTTTTCGAGGTTCTATCCCGCGTCTTGGCAGAGAGATAGTG
TTCGGAGTGGGGCTCAACCAACTTTCGGATTACATGGAGGAGAGATATCG
TCCACTAATATCAAGCGCACTTGCTGCCAACATGGCCGGTTCGCTTAGTG
CCGGAGTTGTATCAGGGTATCTATCTCATGTTCCGCACAACCTCAGCACA
TACAAGCTTCTCAATCCGCATCAGTCGTACTCCGAATTGTTTCAGTTGTT
TGTCGACAAATCTGTGCCAGAGCATCTTATCCCAAAGGCGCTGCCACCAT
CCGTTGTACCTGTTGCCAAAGCTGCACTGGCATGCCTGTTTCCCAGaggc
gttctaattcgtacagctcagatatgcggatcgtttgcgattctgaacgg
tatcattctactcatagaaactgatagtagaaaccgcatgacgAAAGCCA
TCGAATCAGTCGACGAAGAAATCGAAACGGAAGCAAAGATTGAAGTAGCG
CGTTCTCAATCGGAATAA

Coding sequence (CDS) from alignment at NODE_1427_length_10755_cov_3.958177:9236..10603+

>Gcaud2246.t1 ID=Gcaud2246.t1|Name=Gcaud2246.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1368bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:9236..10603+ (Gracilaria caudata M_176_S67 male)
ATGCCGGCTGCCGCTGCGTCCACGCCGTCTTCCACACCGTCTCAATCGCT
CTCCGACAACGATGTTCGCGACGCGGTTGACCGCCTGGCGCACACGCCCA
TGTTTCATCGATGCCAACCGTCTCAGTTGGTTGCGCTCGCCCGCGAAATG
CACAAGGTGGTGTTCCGGCGGGGCGATCTAATCGTCACGCAGAATCAGCC
TGCAGACCGTATGCTCGTTATTGCTGATGGCTACGCACGTCGCATCAGAA
TGGGTTCCGATGGAGTGGAGAGACAACTGAAGACCGCCCACGCTGATACC
ATTTCTGAGCTTTATATAACCGCCGGTGATCCCGTTTATGCTTCGGCAAA
GTGTGTTACCCGCTCCTGTACCGCGTATGCCATGAGTCGAGCTGCGTTTC
GCTCGCACTTGCAACGCAGCCCTGTGTTGAGCACGCAGGTGATTGAGTCG
CTTTCCGAAGATGTGCTCCACAAAACGCGCCAGTTTCGTACCCCGCTTTT
GTCGCAACGTTCAAATGAAATCAATCTTAGTGCCGTTGCTGTCGCGTCTG
TGGTAGAGTCCTACTACAGATCGGCACTTAACGCCATCCTTAATCGTCGT
CTTAGCGGTATATCAGCTCCACTCTTTCCCAACATGCATGTGCAAGTGCC
GGCTCGTGTAGTGTACATCACTGGATTCAAGAGCTTGCGCGCCATTTTGG
ATCGTGACATTGATCCAGACCAACTGAATAGCCACCCTGCAAGAGTGGCT
GCCAGATTTGGTAAGACCATCGCACCAGGTGTTGTCATGACGCCCATCTC
AAGCATTCTGGAGGCTTCTAACGTCGGTCATGTCAACTCCGAACCTCTTC
TTCGGAGGAGTTTTCGAGGTTCTATCCCGCGTCTTGGCAGAGAGATAGTG
TTCGGAGTGGGGCTCAACCAACTTTCGGATTACATGGAGGAGAGATATCG
TCCACTAATATCAAGCGCACTTGCTGCCAACATGGCCGGTTCGCTTAGTG
CCGGAGTTGTATCAGGGTATCTATCTCATGTTCCGCACAACCTCAGCACA
TACAAGCTTCTCAATCCGCATCAGTCGTACTCCGAATTGTTTCAGTTGTT
TGTCGACAAATCTGTGCCAGAGCATCTTATCCCAAAGGCGCTGCCACCAT
CCGTTGTACCTGTTGCCAAAGCTGCACTGGCATGCCTGTTTCCCAGaggc
gttctaattcgtacagctcagatatgcggatcgtttgcgattctgaacgg
tatcattctactcatagaaactgatagtagaaaccgcatgacgAAAGCCA
TCGAATCAGTCGACGAAGAAATCGAAACGGAAGCAAAGATTGAAGTAGCG
CGTTCTCAATCGGAATAA