Gcaud2244.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2244.t1
Unique Name	Gcaud2244.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	662

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1427_length_10755_cov_3.958177	contig	NODE_1427_length_10755_cov_3.958177:5712..7697 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10029.XP_007630306.1
Preferred name	ZNHIT6
PFAMs	zf-HIT
Max annot lvl	33208\|Metazoa
GOs	GO:0000491,GO:0000492,GO:0000902,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0006403,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0009653,GO:0009987,GO:0016043,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0034622,GO:0042802,GO:0043933,GO:0044085,GO:0048254,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0051117,GO:0051179,GO:0051259,GO:0065003,GO:0070761,GO:0071826,GO:0071840,GO:0120036,GO:0120039,GO:1990904
Evalue	3.13e-20
EggNOG OGs	KOG2858@1\|root,KOG2858@2759\|Eukaryota,39UNB@33154\|Opisthokonta,3B9SC@33208\|Metazoa,3D2FP@33213\|Bilateria,483IP@7711\|Chordata,48X3Z@7742\|Vertebrata,3JD8P@40674\|Mammalia,3594W@314146\|Euarchontoglires,4Q00Q@9989\|Rodentia
Description	box C D snoRNA protein 1
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2244	Gcaud2244	Gracilaria caudata M_176_S67 male	gene	NODE_1427_length_10755_cov_3.958177 5712..7697 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2244.t1.stop1	Gcaud2244.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1427_length_10755_cov_3.958177 5712..5714 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2244.t1.CDS1	Gcaud2244.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1427_length_10755_cov_3.958177 5712..7697 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2244.t1.exon1	Gcaud2244.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1427_length_10755_cov_3.958177 5712..7697 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2244.t1.start1	Gcaud2244.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1427_length_10755_cov_3.958177 7695..7697 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2244.t1	Gcaud2244.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1427_length_10755_cov_3.958177 5712..7697 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1427_length_10755_cov_3.958177:5712..7697-
coding sequence from alignment at NODE_1427_length_10755_cov_3.958177:5712..7697-

mRNA sequence

>Gcaud2244.t1 ID=Gcaud2244.t1|Name=Gcaud2244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=662bp
MRRQHPCDACGRAGKVQVSQYRCPACLRCSCSLACVKDHKQHYNCSGVRD
KTAPVPKRDYDEHNLISDYSLLEEAKRKKDEASRNRVKNFYNPYAPKKVP
DPIPKHKQRILGREAAKRGIDLRFMPNVFYRHRMNTSRIRPVDYSKTEEK
DGATIFEGFNRQFDKIMVWRVDVQFSGTDGGTRLVEIHDLDEEANMNDVL
ERAVQSLHIRKEPRLNGSVDPYLHYSGLSGNQLNAYIKNEISLGARRAEP
SSLPDFPKYKRRKIVDGRVDLGDLELDTRGFILVNTDKTLRESLYSALVV
EHPILYVAPKGSQEDKELEQATKSLFDKPEPEADDSVRPPASHVVRDEGQ
DKNDIEEEDADLNETHHSENQVKSGSAEAHDGKQLEVNPGPENFDRIDDQ
KGERDFSAVPQSDDKTTEEPESRGVKRKAMVESSDDDESDLSELERNITK
RFTPQKKNGGKTGWTRDGKVRIANGKRSASSAVPMPIPRFRSVLPPIHYG
RDETIRGERKEGKDHHNEVTGATSEAEESEDENDADEELSGNESTGQHAD
KGESEQHVDAQIAVGQKRSLKKSMQEKRRPAKRQRFGDLESIEDKQDEKR
DGSGAGEKDDEDGDSKPRSRRQSGVESPPLPFLKVDSVLLDTRIPRRKKI
ADSNGRETLAC*

spliced messenger RNA

>Gcaud2244.t1 ID=Gcaud2244.t1|Name=Gcaud2244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:5712..7697- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGACAACATCCGTGTGATGCTTGCGGCCGAGCTGGAAAAGTGCA
GGTATCCCAGTACCGCTGCCCAGCCTGTTTACGCTGCTCGTGTTCCCTCG
CATGCGTCAAGGATCACAAACAACACTACAATTGTTCCGGCGTCCGCGAC
AAGACAGCCCCAGTCCCGAAACGCGACTACGACGAACACAATCTCATCAG
CGACTACTCTTTGCTGGAGGAAGCCAAACGTAAGAAGGATGAGGCAAGTC
GCAACCGCGTCAAAAATTTTTACAATCCGTACGCCCCGAAGAAGGTGCCT
GACCCCATTCCCAAACACAAGCAAAGAATCTTGGGGCGTGAGGCCGCAAA
GCGTGGAATTGACCTTCGATTCATGCCCAATGTCTTTTACCGCCACAGAA
TGAACACCTCCCGCATCAGGCCTGTGGACTATTCTAAGACAGAGGAAAAG
GATGGTGCCACAATCTTTGAAGGATTTAACCGCCAGTTCGACAAGATCAT
GGTTTGGCGCGTGGACGTGCAGTTTTCTGGAACCGATGGCGGCACAAGGC
TTGTGGAGATCCATGACCTCGATGAAGAGGCCAACATGAACGACGTACTC
GAGCGGGCTGTTCAGTCTCTTCATATACGAAAGGAGCCCAGGTTAAACGG
TTCTGTCGATCCCTATCTGCATTATTCCGGGCTCTCAGGAAATCAGCTCA
ATGCATACATCAAGAATGAAATCAGCCTGGGAGCCCGAAGAGCGGAACCG
TCAAGTCTTCCGGATTTTCCAAAGTACAAACGACGGAAGATAGTCGACGG
TCGAGTTGATCTCGGCGACCTGGAATTGGACACTCGTGGCTTCATTCTGG
TCAACACGGACAAAACATTGCGCGAATCCTTGTACAGCGCTCTTGTGGTG
GAACATCCCATTCTCTACGTTGCCCCAAAAGGATCCCAAGAGGACAAGGA
ACTCGAACAAGCAACGAAGAGCCTGTTCGACAAGCCAGAACCTGAGGCCG
ATGACTCCGTTCGCCCACCGGCAAGCCATGTAGTCCGTGACGAAGGCCAA
GACAAAAACGATATCGAAGAAGAAGACGCCGACTTGAATGAAACCCATCA
TTCTGAAAACCAAGTCAAGTCGGGTTCTGCTGAAGCTCATGACGGCAAGC
AGCTTGAGGTAAACCCAGGGCCGGAGAACTTCGATAGGATCGATGACCAA
AAAGGTGAACGCGATTTTTCCGCGGTTCCGCAGAGCGATGACAAAACCAC
TGAAGAACCGGAATCGCGAGGGGTCAAGAGAAAAGCAATGGTTGAATCAA
GCGATGACGACGAGAGTGATCTCTCCGAGCTTGAGAGAAACATCACTAAA
CGCTTCACTCCACAGAAGAAAAATGGGGGCAAGACTGGCTGGACTCGTGA
TGGAAAGGTAAGGATTGCAAACGGGAAGAGGTCAGCTTCCTCTGCAGTAC
CCATGCCCATCCCTAGATTCCGAAGCGTGCTACCCCCGATTCATTACGGA
AGAGATGAAACGATTCGGGGTGAGAGAAAGGAGGGGAAAGACCATCACAA
CGAAGTTACGGGAGCCACATCTGAAGCCGAAGAATCAGAGGATGAAAATG
ATGCGGATGAAGAGCTCAGTGGAAACGAAAGCACGGGGCAACATGCTGAC
AAAGGCGAATCGGAGCAGCATGTAGATGCCCAAATTGCAGTCGGCCAGAA
AAGGTCACTGAAGAAGTCCATGCAGGAGAAGCGAAGACCGGCAAAGAGGC
AAAGGTTTGGGGACCTCGAAAGCATCGAGGATAAGCAAGACGAGAAGCGG
GATGGAAGCGGGGCTGGGGAAAAGGATGATGAGGACGGCGACTCAAAGCC
AAGATCTCGTAGACAGTCTGGTGTAGAGAGTCCGCCTCTTCCATTCCTCA
AAGTCGACTCTGTGTTGCTGGATACTAGAATCCCAAGGCGAAAGAAGATA
GCCGACTCAAACGGAAGGGAGACGCTAGCTTGCTGA

protein sequence of Gcaud2244.t1

>Gcaud2244.t1 ID=Gcaud2244.t1|Name=Gcaud2244.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=662bp
MRRQHPCDACGRAGKVQVSQYRCPACLRCSCSLACVKDHKQHYNCSGVRD
KTAPVPKRDYDEHNLISDYSLLEEAKRKKDEASRNRVKNFYNPYAPKKVP
DPIPKHKQRILGREAAKRGIDLRFMPNVFYRHRMNTSRIRPVDYSKTEEK
DGATIFEGFNRQFDKIMVWRVDVQFSGTDGGTRLVEIHDLDEEANMNDVL
ERAVQSLHIRKEPRLNGSVDPYLHYSGLSGNQLNAYIKNEISLGARRAEP
SSLPDFPKYKRRKIVDGRVDLGDLELDTRGFILVNTDKTLRESLYSALVV
EHPILYVAPKGSQEDKELEQATKSLFDKPEPEADDSVRPPASHVVRDEGQ
DKNDIEEEDADLNETHHSENQVKSGSAEAHDGKQLEVNPGPENFDRIDDQ
KGERDFSAVPQSDDKTTEEPESRGVKRKAMVESSDDDESDLSELERNITK
RFTPQKKNGGKTGWTRDGKVRIANGKRSASSAVPMPIPRFRSVLPPIHYG
RDETIRGERKEGKDHHNEVTGATSEAEESEDENDADEELSGNESTGQHAD
KGESEQHVDAQIAVGQKRSLKKSMQEKRRPAKRQRFGDLESIEDKQDEKR
DGSGAGEKDDEDGDSKPRSRRQSGVESPPLPFLKVDSVLLDTRIPRRKKI
ADSNGRETLAC*

mRNA from alignment at NODE_1427_length_10755_cov_3.958177:5712..7697-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2244.t1 ID=Gcaud2244.t1|Name=Gcaud2244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:5712..7697- (Gracilaria caudata M_176_S67 male)
ATGCGTCGACAACATCCGTGTGATGCTTGCGGCCGAGCTGGAAAAGTGCA
GGTATCCCAGTACCGCTGCCCAGCCTGTTTACGCTGCTCGTGTTCCCTCG
CATGCGTCAAGGATCACAAACAACACTACAATTGTTCCGGCGTCCGCGAC
AAGACAGCCCCAGTCCCGAAACGCGACTACGACGAACACAATCTCATCAG
CGACTACTCTTTGCTGGAGGAAGCCAAACGTAAGAAGGATGAGGCAAGTC
GCAACCGCGTCAAAAATTTTTACAATCCGTACGCCCCGAAGAAGGTGCCT
GACCCCATTCCCAAACACAAGCAAAGAATCTTGGGGCGTGAGGCCGCAAA
GCGTGGAATTGACCTTCGATTCATGCCCAATGTCTTTTACCGCCACAGAA
TGAACACCTCCCGCATCAGGCCTGTGGACTATTCTAAGACAGAGGAAAAG
GATGGTGCCACAATCTTTGAAGGATTTAACCGCCAGTTCGACAAGATCAT
GGTTTGGCGCGTGGACGTGCAGTTTTCTGGAACCGATGGCGGCACAAGGC
TTGTGGAGATCCATGACCTCGATGAAGAGGCCAACATGAACGACGTACTC
GAGCGGGCTGTTCAGTCTCTTCATATACGAAAGGAGCCCAGGTTAAACGG
TTCTGTCGATCCCTATCTGCATTATTCCGGGCTCTCAGGAAATCAGCTCA
ATGCATACATCAAGAATGAAATCAGCCTGGGAGCCCGAAGAGCGGAACCG
TCAAGTCTTCCGGATTTTCCAAAGTACAAACGACGGAAGATAGTCGACGG
TCGAGTTGATCTCGGCGACCTGGAATTGGACACTCGTGGCTTCATTCTGG
TCAACACGGACAAAACATTGCGCGAATCCTTGTACAGCGCTCTTGTGGTG
GAACATCCCATTCTCTACGTTGCCCCAAAAGGATCCCAAGAGGACAAGGA
ACTCGAACAAGCAACGAAGAGCCTGTTCGACAAGCCAGAACCTGAGGCCG
ATGACTCCGTTCGCCCACCGGCAAGCCATGTAGTCCGTGACGAAGGCCAA
GACAAAAACGATATCGAAGAAGAAGACGCCGACTTGAATGAAACCCATCA
TTCTGAAAACCAAGTCAAGTCGGGTTCTGCTGAAGCTCATGACGGCAAGC
AGCTTGAGGTAAACCCAGGGCCGGAGAACTTCGATAGGATCGATGACCAA
AAAGGTGAACGCGATTTTTCCGCGGTTCCGCAGAGCGATGACAAAACCAC
TGAAGAACCGGAATCGCGAGGGGTCAAGAGAAAAGCAATGGTTGAATCAA
GCGATGACGACGAGAGTGATCTCTCCGAGCTTGAGAGAAACATCACTAAA
CGCTTCACTCCACAGAAGAAAAATGGGGGCAAGACTGGCTGGACTCGTGA
TGGAAAGGTAAGGATTGCAAACGGGAAGAGGTCAGCTTCCTCTGCAGTAC
CCATGCCCATCCCTAGATTCCGAAGCGTGCTACCCCCGATTCATTACGGA
AGAGATGAAACGATTCGGGGTGAGAGAAAGGAGGGGAAAGACCATCACAA
CGAAGTTACGGGAGCCACATCTGAAGCCGAAGAATCAGAGGATGAAAATG
ATGCGGATGAAGAGCTCAGTGGAAACGAAAGCACGGGGCAACATGCTGAC
AAAGGCGAATCGGAGCAGCATGTAGATGCCCAAATTGCAGTCGGCCAGAA
AAGGTCACTGAAGAAGTCCATGCAGGAGAAGCGAAGACCGGCAAAGAGGC
AAAGGTTTGGGGACCTCGAAAGCATCGAGGATAAGCAAGACGAGAAGCGG
GATGGAAGCGGGGCTGGGGAAAAGGATGATGAGGACGGCGACTCAAAGCC
AAGATCTCGTAGACAGTCTGGTGTAGAGAGTCCGCCTCTTCCATTCCTCA
AAGTCGACTCTGTGTTGCTGGATACTAGAATCCCAAGGCGAAAGAAGATA
GCCGACTCAAACGGAAGGGAGACGCTAGCTTGCTGA

Coding sequence (CDS) from alignment at NODE_1427_length_10755_cov_3.958177:5712..7697-

>Gcaud2244.t1 ID=Gcaud2244.t1|Name=Gcaud2244.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1986bp|location=Sequence derived from alignment at NODE_1427_length_10755_cov_3.958177:5712..7697- (Gracilaria caudata M_176_S67 male)
ATGCGTCGACAACATCCGTGTGATGCTTGCGGCCGAGCTGGAAAAGTGCA
GGTATCCCAGTACCGCTGCCCAGCCTGTTTACGCTGCTCGTGTTCCCTCG
CATGCGTCAAGGATCACAAACAACACTACAATTGTTCCGGCGTCCGCGAC
AAGACAGCCCCAGTCCCGAAACGCGACTACGACGAACACAATCTCATCAG
CGACTACTCTTTGCTGGAGGAAGCCAAACGTAAGAAGGATGAGGCAAGTC
GCAACCGCGTCAAAAATTTTTACAATCCGTACGCCCCGAAGAAGGTGCCT
GACCCCATTCCCAAACACAAGCAAAGAATCTTGGGGCGTGAGGCCGCAAA
GCGTGGAATTGACCTTCGATTCATGCCCAATGTCTTTTACCGCCACAGAA
TGAACACCTCCCGCATCAGGCCTGTGGACTATTCTAAGACAGAGGAAAAG
GATGGTGCCACAATCTTTGAAGGATTTAACCGCCAGTTCGACAAGATCAT
GGTTTGGCGCGTGGACGTGCAGTTTTCTGGAACCGATGGCGGCACAAGGC
TTGTGGAGATCCATGACCTCGATGAAGAGGCCAACATGAACGACGTACTC
GAGCGGGCTGTTCAGTCTCTTCATATACGAAAGGAGCCCAGGTTAAACGG
TTCTGTCGATCCCTATCTGCATTATTCCGGGCTCTCAGGAAATCAGCTCA
ATGCATACATCAAGAATGAAATCAGCCTGGGAGCCCGAAGAGCGGAACCG
TCAAGTCTTCCGGATTTTCCAAAGTACAAACGACGGAAGATAGTCGACGG
TCGAGTTGATCTCGGCGACCTGGAATTGGACACTCGTGGCTTCATTCTGG
TCAACACGGACAAAACATTGCGCGAATCCTTGTACAGCGCTCTTGTGGTG
GAACATCCCATTCTCTACGTTGCCCCAAAAGGATCCCAAGAGGACAAGGA
ACTCGAACAAGCAACGAAGAGCCTGTTCGACAAGCCAGAACCTGAGGCCG
ATGACTCCGTTCGCCCACCGGCAAGCCATGTAGTCCGTGACGAAGGCCAA
GACAAAAACGATATCGAAGAAGAAGACGCCGACTTGAATGAAACCCATCA
TTCTGAAAACCAAGTCAAGTCGGGTTCTGCTGAAGCTCATGACGGCAAGC
AGCTTGAGGTAAACCCAGGGCCGGAGAACTTCGATAGGATCGATGACCAA
AAAGGTGAACGCGATTTTTCCGCGGTTCCGCAGAGCGATGACAAAACCAC
TGAAGAACCGGAATCGCGAGGGGTCAAGAGAAAAGCAATGGTTGAATCAA
GCGATGACGACGAGAGTGATCTCTCCGAGCTTGAGAGAAACATCACTAAA
CGCTTCACTCCACAGAAGAAAAATGGGGGCAAGACTGGCTGGACTCGTGA
TGGAAAGGTAAGGATTGCAAACGGGAAGAGGTCAGCTTCCTCTGCAGTAC
CCATGCCCATCCCTAGATTCCGAAGCGTGCTACCCCCGATTCATTACGGA
AGAGATGAAACGATTCGGGGTGAGAGAAAGGAGGGGAAAGACCATCACAA
CGAAGTTACGGGAGCCACATCTGAAGCCGAAGAATCAGAGGATGAAAATG
ATGCGGATGAAGAGCTCAGTGGAAACGAAAGCACGGGGCAACATGCTGAC
AAAGGCGAATCGGAGCAGCATGTAGATGCCCAAATTGCAGTCGGCCAGAA
AAGGTCACTGAAGAAGTCCATGCAGGAGAAGCGAAGACCGGCAAAGAGGC
AAAGGTTTGGGGACCTCGAAAGCATCGAGGATAAGCAAGACGAGAAGCGG
GATGGAAGCGGGGCTGGGGAAAAGGATGATGAGGACGGCGACTCAAAGCC
AAGATCTCGTAGACAGTCTGGTGTAGAGAGTCCGCCTCTTCCATTCCTCA
AAGTCGACTCTGTGTTGCTGGATACTAGAATCCCAAGGCGAAAGAAGATA
GCCGACTCAAACGGAAGGGAGACGCTAGCTTGCTGA