Gcaud2242.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2242.t1
Unique Name	Gcaud2242.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2174_length_6571_cov_4.069753	contig	NODE_2174_length_6571_cov_4.069753:4851..6095 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003058480.1
PFAMs	DEK_C
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K17046
Evalue	3.27e-09
EggNOG OGs	KOG2266@1\|root,KOG2266@2759\|Eukaryota,37WAS@33090\|Viridiplantae,34I5K@3041\|Chlorophyta
Description	homolog of the human DEK protein, an abundant chromatin protein that is linked with cancers and autoimmune disease. ChromDB ID
COG category	B
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2242	Gcaud2242	Gracilaria caudata M_176_S67 male	gene	NODE_2174_length_6571_cov_4.069753 4851..6095 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2242.t1.stop1	Gcaud2242.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2174_length_6571_cov_4.069753 4851..4853 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2242.t1.CDS1	Gcaud2242.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2174_length_6571_cov_4.069753 4851..6095 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2242.t1.exon1	Gcaud2242.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2174_length_6571_cov_4.069753 4851..6095 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2242.t1.start1	Gcaud2242.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2174_length_6571_cov_4.069753 6093..6095 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2242.t1	Gcaud2242.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2174_length_6571_cov_4.069753 4851..6095 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2174_length_6571_cov_4.069753:4851..6095-
coding sequence from alignment at NODE_2174_length_6571_cov_4.069753:4851..6095-

mRNA sequence

>Gcaud2242.t1 ID=Gcaud2242.t1|Name=Gcaud2242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=415bp
MKLESTVSSSDCAAHSSPSLANGSSSQYAGQNGVPDKTPQPLKRNGLTSS
SAKRPKRPCEAEQPTDTLTTNESETDARQTASQADAVDSASTSTQRRPLG
TRKRRKTRMFEIAAPTHVRRVSTGALGVTGRGEKLCNIPNILYNIDKAHS
KDAEIEFLHRLLFNFVGSAHTRKSNIRSFSGFMFASEKDRNRVRDKLLRA
HLNMVRKMAKFLDVPVNKPHPPSNEANGEPVLNAGTDANASDPSQPSPAL
NADKRALLSEAMGMDDDEISETCRDVKAVNAKRNPSQKNVRETTMTAGKD
DLVRVLLEFLEMPRVIEGRGSLAERDKELRRQKKAAEKAAEKARAEKAAL
KKAAERKAALMKKKEVRESDEDGDEDLETGGTTWIELAKQWKEAKAREES
ASKRNGFLTTNGHG*

spliced messenger RNA

>Gcaud2242.t1 ID=Gcaud2242.t1|Name=Gcaud2242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:4851..6095- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTGGAGTCTACGGTTTCTTCTTCCGATTGCGCTGCGCATTCGTC
ACCGTCGCTTGCGAATGGGTCCTCTTCACAGTACGCTGGTCAGAACGGGG
TGCCGGATAAGACGCCACAACCACTGAAACGAAACGGATTGACGAGTTCG
TCCGCAAAGCGTCCTAAGCGCCCATGCGAAGCCGAGCAACCTACCGATAC
TCTAACCACTAATGAATCCGAAACAGATGCTCGACAGACAGCATCCCAAG
CCGATGCAGTCGACTCGGCATCAACCTCCACGCAGCGCCGTCCACTCGGC
ACACGCAAACGAAGGAAGACAAGAATGTTTGAAATTGCCGCGCCAACACA
CGTTCGTCGAGTGAGCACGGGCGCGCTTGGCGTTACTGGTCGCGGTGAAA
AGCTTTGTAACATACCCAACATCCTGTACAATATCGACAAAGCGCACTCA
AAGGACGCCGAGATAGAGTTCTTGCATCGTCTTTTGTTCAATTTCGTCGG
CTCCGCGCACACGAGAAAGTCCAACATTCGGTCGTTCTCGGGTTTTATGT
TTGCATCCGAGAAAGACCGAAATCGAGTTCGGGACAAGCTTTTGCGCGCC
CATTTGAATATGGTGCGGAAGATGGCCAAATTTTTGGATGTGCCCGTCAA
TAAGCCGCACCCACCCAGCAATGAAGCGAATGGAGAACCTGTTTTAAACG
CGGGTACTGATGCAAATGCGAGCGATCCCTCACAGCCTTCACCGGCGCTG
AATGCGGATAAAAGAGCTCTTCTTTCGGAAGCGATGGGAATGGACGACGA
CGAAATAAGTGAGACATGTCGTGACGTTAAAGCAGTAAACGCAAAACGAA
ACCCGTCTCAGAAGAATGTCCGCGAGACAACTATGACTGCGGGAAAAGAC
GATCTGGTGCGTGTTCTGTTAGAATTTTTGGAAATGCCGCGGGTAATCGA
AGGGCGAGGGAGTTTGGCCGAGCGCGATAAAGAACTTCGACGACAAAAGA
AGGCGGCGGAAAAAGCGGCGGAGAAAGCGAGAGCAGAAAAGGCGGCTTTG
AAGAAGGCGGCTGAAAGAAAAGCGGCTCTGATGAAGAAGAAGGAGGTTCG
TGAGAGTGATGAGGATGGCGATGAAGATCTTGAAACAGGTGGTACTACGT
GGATCGAACTTGCAAAACAATGGAAAGAGGCTAAAGCGCGGGAGGAAAGC
GCATCGAAACGAAACGGGTTCCTAACGACGAACGGACATGGTTAA

protein sequence of Gcaud2242.t1

>Gcaud2242.t1 ID=Gcaud2242.t1|Name=Gcaud2242.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=415bp
MKLESTVSSSDCAAHSSPSLANGSSSQYAGQNGVPDKTPQPLKRNGLTSS
SAKRPKRPCEAEQPTDTLTTNESETDARQTASQADAVDSASTSTQRRPLG
TRKRRKTRMFEIAAPTHVRRVSTGALGVTGRGEKLCNIPNILYNIDKAHS
KDAEIEFLHRLLFNFVGSAHTRKSNIRSFSGFMFASEKDRNRVRDKLLRA
HLNMVRKMAKFLDVPVNKPHPPSNEANGEPVLNAGTDANASDPSQPSPAL
NADKRALLSEAMGMDDDEISETCRDVKAVNAKRNPSQKNVRETTMTAGKD
DLVRVLLEFLEMPRVIEGRGSLAERDKELRRQKKAAEKAAEKARAEKAAL
KKAAERKAALMKKKEVRESDEDGDEDLETGGTTWIELAKQWKEAKAREES
ASKRNGFLTTNGHG*

mRNA from alignment at NODE_2174_length_6571_cov_4.069753:4851..6095-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2242.t1 ID=Gcaud2242.t1|Name=Gcaud2242.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:4851..6095- (Gracilaria caudata M_176_S67 male)
ATGAAGTTGGAGTCTACGGTTTCTTCTTCCGATTGCGCTGCGCATTCGTC
ACCGTCGCTTGCGAATGGGTCCTCTTCACAGTACGCTGGTCAGAACGGGG
TGCCGGATAAGACGCCACAACCACTGAAACGAAACGGATTGACGAGTTCG
TCCGCAAAGCGTCCTAAGCGCCCATGCGAAGCCGAGCAACCTACCGATAC
TCTAACCACTAATGAATCCGAAACAGATGCTCGACAGACAGCATCCCAAG
CCGATGCAGTCGACTCGGCATCAACCTCCACGCAGCGCCGTCCACTCGGC
ACACGCAAACGAAGGAAGACAAGAATGTTTGAAATTGCCGCGCCAACACA
CGTTCGTCGAGTGAGCACGGGCGCGCTTGGCGTTACTGGTCGCGGTGAAA
AGCTTTGTAACATACCCAACATCCTGTACAATATCGACAAAGCGCACTCA
AAGGACGCCGAGATAGAGTTCTTGCATCGTCTTTTGTTCAATTTCGTCGG
CTCCGCGCACACGAGAAAGTCCAACATTCGGTCGTTCTCGGGTTTTATGT
TTGCATCCGAGAAAGACCGAAATCGAGTTCGGGACAAGCTTTTGCGCGCC
CATTTGAATATGGTGCGGAAGATGGCCAAATTTTTGGATGTGCCCGTCAA
TAAGCCGCACCCACCCAGCAATGAAGCGAATGGAGAACCTGTTTTAAACG
CGGGTACTGATGCAAATGCGAGCGATCCCTCACAGCCTTCACCGGCGCTG
AATGCGGATAAAAGAGCTCTTCTTTCGGAAGCGATGGGAATGGACGACGA
CGAAATAAGTGAGACATGTCGTGACGTTAAAGCAGTAAACGCAAAACGAA
ACCCGTCTCAGAAGAATGTCCGCGAGACAACTATGACTGCGGGAAAAGAC
GATCTGGTGCGTGTTCTGTTAGAATTTTTGGAAATGCCGCGGGTAATCGA
AGGGCGAGGGAGTTTGGCCGAGCGCGATAAAGAACTTCGACGACAAAAGA
AGGCGGCGGAAAAAGCGGCGGAGAAAGCGAGAGCAGAAAAGGCGGCTTTG
AAGAAGGCGGCTGAAAGAAAAGCGGCTCTGATGAAGAAGAAGGAGGTTCG
TGAGAGTGATGAGGATGGCGATGAAGATCTTGAAACAGGTGGTACTACGT
GGATCGAACTTGCAAAACAATGGAAAGAGGCTAAAGCGCGGGAGGAAAGC
GCATCGAAACGAAACGGGTTCCTAACGACGAACGGACATGGTTAA

Coding sequence (CDS) from alignment at NODE_2174_length_6571_cov_4.069753:4851..6095-

>Gcaud2242.t1 ID=Gcaud2242.t1|Name=Gcaud2242.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1245bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:4851..6095- (Gracilaria caudata M_176_S67 male)
ATGAAGTTGGAGTCTACGGTTTCTTCTTCCGATTGCGCTGCGCATTCGTC
ACCGTCGCTTGCGAATGGGTCCTCTTCACAGTACGCTGGTCAGAACGGGG
TGCCGGATAAGACGCCACAACCACTGAAACGAAACGGATTGACGAGTTCG
TCCGCAAAGCGTCCTAAGCGCCCATGCGAAGCCGAGCAACCTACCGATAC
TCTAACCACTAATGAATCCGAAACAGATGCTCGACAGACAGCATCCCAAG
CCGATGCAGTCGACTCGGCATCAACCTCCACGCAGCGCCGTCCACTCGGC
ACACGCAAACGAAGGAAGACAAGAATGTTTGAAATTGCCGCGCCAACACA
CGTTCGTCGAGTGAGCACGGGCGCGCTTGGCGTTACTGGTCGCGGTGAAA
AGCTTTGTAACATACCCAACATCCTGTACAATATCGACAAAGCGCACTCA
AAGGACGCCGAGATAGAGTTCTTGCATCGTCTTTTGTTCAATTTCGTCGG
CTCCGCGCACACGAGAAAGTCCAACATTCGGTCGTTCTCGGGTTTTATGT
TTGCATCCGAGAAAGACCGAAATCGAGTTCGGGACAAGCTTTTGCGCGCC
CATTTGAATATGGTGCGGAAGATGGCCAAATTTTTGGATGTGCCCGTCAA
TAAGCCGCACCCACCCAGCAATGAAGCGAATGGAGAACCTGTTTTAAACG
CGGGTACTGATGCAAATGCGAGCGATCCCTCACAGCCTTCACCGGCGCTG
AATGCGGATAAAAGAGCTCTTCTTTCGGAAGCGATGGGAATGGACGACGA
CGAAATAAGTGAGACATGTCGTGACGTTAAAGCAGTAAACGCAAAACGAA
ACCCGTCTCAGAAGAATGTCCGCGAGACAACTATGACTGCGGGAAAAGAC
GATCTGGTGCGTGTTCTGTTAGAATTTTTGGAAATGCCGCGGGTAATCGA
AGGGCGAGGGAGTTTGGCCGAGCGCGATAAAGAACTTCGACGACAAAAGA
AGGCGGCGGAAAAAGCGGCGGAGAAAGCGAGAGCAGAAAAGGCGGCTTTG
AAGAAGGCGGCTGAAAGAAAAGCGGCTCTGATGAAGAAGAAGGAGGTTCG
TGAGAGTGATGAGGATGGCGATGAAGATCTTGAAACAGGTGGTACTACGT
GGATCGAACTTGCAAAACAATGGAAAGAGGCTAAAGCGCGGGAGGAAAGC
GCATCGAAACGAAACGGGTTCCTAACGACGAACGGACATGGTTAA