Gcaud2240.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2240.t1
Unique NameGcaud2240.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2174_length_6571_cov_4.069753contigNODE_2174_length_6571_cov_4.069753:2461..2867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog117187.FVEG_03999T0
PFAMsThioredoxin
Max annot lvl4751|Fungi
Evalue2.55e-21
EggNOG OGsKOG0908@1|root,KOG0908@2759|Eukaryota,3A2DH@33154|Opisthokonta,3P3Q3@4751|Fungi,3QVG5@4890|Ascomycota,21AGH@147550|Sordariomycetes,3TIAX@5125|Hypocreales,1FVW9@110618|Nectriaceae
DescriptionThioredoxin
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2240Gcaud2240Gracilaria caudata M_176_S67 malegeneNODE_2174_length_6571_cov_4.069753 2461..2867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2240.t1Gcaud2240.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2174_length_6571_cov_4.069753 2461..2867 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2240.t1.start1Gcaud2240.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2174_length_6571_cov_4.069753 2461..2463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2240.t1.CDS1Gcaud2240.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2174_length_6571_cov_4.069753 2461..2546 +
Gcaud2240.t1.CDS2Gcaud2240.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2174_length_6571_cov_4.069753 2618..2867 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2240.t1.exon1Gcaud2240.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2174_length_6571_cov_4.069753 2461..2546 +
Gcaud2240.t1.exon2Gcaud2240.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2174_length_6571_cov_4.069753 2618..2867 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2240.t1.intron1Gcaud2240.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2174_length_6571_cov_4.069753 2547..2617 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2240.t1.stop1Gcaud2240.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2174_length_6571_cov_4.069753 2865..2867 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2240.t1 ID=Gcaud2240.t1|Name=Gcaud2240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=112bp
MVKRVKVESEAESIISGTPIAVGHMYADWCGPCRMMEPVFEGIESEYEAS
NPGKTAFYKVNIDELVDYTNKLGVSSLPVFLVYFQGKLHHTIKGANEVEI
RRTISDLVAKL*
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spliced messenger RNA

>Gcaud2240.t1 ID=Gcaud2240.t1|Name=Gcaud2240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:2461..2867+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAAAAGAGTTAAAGTGGAGTCCGAAGCTGAGAGCATCATAAGCGG
AACACCGATTGCTGTCGGTCACATGTACGCCGATTGGTGTGGTCCGTGCC
GAATGATGGAGCCAGTTTTCGAGGGTATTGAGAGTGAGTATGAGGCTTCG
AATCCTGGAAAAACAGCTTTCTACAAAGTGAACATTGATGAGTTGGTGGA
CTACACCAACAAGCTGGGCGTGTCTTCATTGCCTGTGTTCTTGGTATACT
TCCAAGGAAAGTTACATCATACCATTAAAGGCGCGAATGAAGTGGAAATA
AGGAGAACCATCTCGGACTTAGTGGCCAAGCTGTAG
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protein sequence of Gcaud2240.t1

>Gcaud2240.t1 ID=Gcaud2240.t1|Name=Gcaud2240.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=112bp
MVKRVKVESEAESIISGTPIAVGHMYADWCGPCRMMEPVFEGIESEYEAS
NPGKTAFYKVNIDELVDYTNKLGVSSLPVFLVYFQGKLHHTIKGANEVEI
RRTISDLVAKL*
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mRNA from alignment at NODE_2174_length_6571_cov_4.069753:2461..2867+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2240.t1 ID=Gcaud2240.t1|Name=Gcaud2240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=407bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:2461..2867+ (Gracilaria caudata M_176_S67 male)
ATGGTTAAAAGAGTTAAAGTGGAGTCCGAAGCTGAGAGCATCATAAGCGG
AACACCGATTGCTGTCGGTCACATGTACGCCGATTGGTAAGTTCAGCAAG
GGAACCCATCGTTCTCAGTCGCTCTGGTCTAACTATATTTTGCTGGTTGG
TTTGCAGGTGTGGTCCGTGCCGAATGATGGAGCCAGTTTTCGAGGGTATT
GAGAGTGAGTATGAGGCTTCGAATCCTGGAAAAACAGCTTTCTACAAAGT
GAACATTGATGAGTTGGTGGACTACACCAACAAGCTGGGCGTGTCTTCAT
TGCCTGTGTTCTTGGTATACTTCCAAGGAAAGTTACATCATACCATTAAA
GGCGCGAATGAAGTGGAAATAAGGAGAACCATCTCGGACTTAGTGGCCAA
GCTGTAG
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Coding sequence (CDS) from alignment at NODE_2174_length_6571_cov_4.069753:2461..2867+

>Gcaud2240.t1 ID=Gcaud2240.t1|Name=Gcaud2240.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=336bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:2461..2867+ (Gracilaria caudata M_176_S67 male)
ATGGTTAAAAGAGTTAAAGTGGAGTCCGAAGCTGAGAGCATCATAAGCGG
AACACCGATTGCTGTCGGTCACATGTACGCCGATTGGTGTGGTCCGTGCC
GAATGATGGAGCCAGTTTTCGAGGGTATTGAGAGTGAGTATGAGGCTTCG
AATCCTGGAAAAACAGCTTTCTACAAAGTGAACATTGATGAGTTGGTGGA
CTACACCAACAAGCTGGGCGTGTCTTCATTGCCTGTGTTCTTGGTATACT
TCCAAGGAAAGTTACATCATACCATTAAAGGCGCGAATGAAGTGGAAATA
AGGAGAACCATCTCGGACTTAGTGGCCAAGCTGTAG
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