Gcaud2237.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2237.t1
Unique NameGcaud2237.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2822_length_4632_cov_3.761726contigNODE_2822_length_4632_cov_3.761726:3908..4627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001746756.1
Preferred nameMTR
PFAMsB12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans
Max annot lvl33154|Opisthokonta
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00548
KEGG ReactionR00946,R09365
KEGG Pathwayko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230
KEGG ModuleM00017
GOsGO:0000096,GO:0000097,GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007399,GO:0007584,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009235,GO:0009605,GO:0009611,GO:0009719,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0016043,GO:0016053,GO:0016597,GO:0016740,GO:0016741,GO:0017144,GO:0019538,GO:0019752,GO:0019842,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031099,GO:0031102,GO:0031103,GO:0031175,GO:0031406,GO:0031419,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032259,GO:0032501,GO:0032502,GO:0033013,GO:0033218,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0035690,GO:0036094,GO:0036211,GO:0042084,GO:0042221,GO:0042493,GO:0042558,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043200,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046906,GO:0048037,GO:0048468,GO:0048666,GO:0048678,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050667,GO:0050896,GO:0051186,GO:0051716,GO:0061431,GO:0061564,GO:0070887,GO:0071229,GO:0071230,GO:0071241,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0072341,GO:0097159,GO:0097366,GO:0120036,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1904640
Evalue1.32e-81
EggNOG OGsCOG0646@1|root,KOG1579@2759|Eukaryota,38H40@33154|Opisthokonta
EC2.1.1.13
Description5-methyltetrahydrofolate--homocysteine methyltransferase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2237Gcaud2237Gracilaria caudata M_176_S67 malegeneNODE_2822_length_4632_cov_3.761726 3908..4627 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2237.t1.stop1Gcaud2237.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2822_length_4632_cov_3.761726 3908..3910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2237.t1.CDS1Gcaud2237.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2822_length_4632_cov_3.761726 3908..4627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2237.t1.exon1Gcaud2237.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2822_length_4632_cov_3.761726 3908..4627 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2237.t1.start1Gcaud2237.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2822_length_4632_cov_3.761726 4625..4627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2237.t1Gcaud2237.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2822_length_4632_cov_3.761726 3908..4627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2237.t1 ID=Gcaud2237.t1|Name=Gcaud2237.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
LGFFPANTINHDDIEVYAPEDDDIRAHAIETYRTLRQQAEKEDEEAPYLA
MADFIAPKESGMKDYIGMFAVGIFGAEDLIAKYKQDLDDYRVIMCEALAD
RLAEAFAEKLHEDVRNKPEFWGYTNGNEKLSTEDLIKIRYSGIRPAPGYP
SQPDHTEKLAMWKLLDAEVSADLKLTESLAMLPAAAVSGLYFAHQKSQYF
AVGKITKEQATDYGEKRKGWSTAKTEKWLRPILSYETEV*
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spliced messenger RNA

>Gcaud2237.t1 ID=Gcaud2237.t1|Name=Gcaud2237.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:3908..4627- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGGTTTCTTCCCGGCGAACACTATCAATCATGACGATATCGAAGTATA
CGCACCGGAGGACGATGACATAAGAGCGCACGCGATTGAAACATATCGCA
CCTTACGTCAACAAGCCGAGAAGGAGGACGAGGAGGCACCGTATCTGGCT
ATGGCTGATTTCATAGCACCGAAAGAAAGTGGAATGAAGGATTACATCGG
TATGTTTGCAGTTGGCATATTTGGCGCCGAAGATTTGATTGCCAAATACA
AACAGGACCTGGACGATTATCGCGTGATCATGTGCGAAGCTCTCGCAGAC
CGTCTTGCTGAAGCCTTTGCCGAGAAGCTGCATGAAGATGTGAGAAACAA
GCCTGAATTTTGGGGCTACACAAATGGTAATGAGAAGCTATCTACTGAGG
ACCTTATTAAGATCCGATACAGCGGGATTCGCCCGGCTCCTGGTTATCCA
TCACAACCCGATCACACTGAGAAGCTGGCGATGTGGAAATTGCTTGATGC
CGAAGTAAGCGCGGATCTAAAACTCACAGAAAGTTTGGCCATGCTTCCCG
CAGCAGCTGTGTCAGGCCTCTACTTTGCCCATCAGAAGTCGCAGTACTTC
GCGGTTGGTAAAATCACTAAGGAGCAGGCGACAGATTATGGTGAGAAACG
GAAGGGATGGAGCACCGCGAAGACTGAAAAGTGGCTTCGTCCGATTTTGT
CTTATGAGACTGAGGTGTAA
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protein sequence of Gcaud2237.t1

>Gcaud2237.t1 ID=Gcaud2237.t1|Name=Gcaud2237.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
LGFFPANTINHDDIEVYAPEDDDIRAHAIETYRTLRQQAEKEDEEAPYLA
MADFIAPKESGMKDYIGMFAVGIFGAEDLIAKYKQDLDDYRVIMCEALAD
RLAEAFAEKLHEDVRNKPEFWGYTNGNEKLSTEDLIKIRYSGIRPAPGYP
SQPDHTEKLAMWKLLDAEVSADLKLTESLAMLPAAAVSGLYFAHQKSQYF
AVGKITKEQATDYGEKRKGWSTAKTEKWLRPILSYETEV*
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mRNA from alignment at NODE_2822_length_4632_cov_3.761726:3908..4627-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2237.t1 ID=Gcaud2237.t1|Name=Gcaud2237.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:3908..4627- (Gracilaria caudata M_176_S67 male)
TTGGGTTTCTTCCCGGCGAACACTATCAATCATGACGATATCGAAGTATA
CGCACCGGAGGACGATGACATAAGAGCGCACGCGATTGAAACATATCGCA
CCTTACGTCAACAAGCCGAGAAGGAGGACGAGGAGGCACCGTATCTGGCT
ATGGCTGATTTCATAGCACCGAAAGAAAGTGGAATGAAGGATTACATCGG
TATGTTTGCAGTTGGCATATTTGGCGCCGAAGATTTGATTGCCAAATACA
AACAGGACCTGGACGATTATCGCGTGATCATGTGCGAAGCTCTCGCAGAC
CGTCTTGCTGAAGCCTTTGCCGAGAAGCTGCATGAAGATGTGAGAAACAA
GCCTGAATTTTGGGGCTACACAAATGGTAATGAGAAGCTATCTACTGAGG
ACCTTATTAAGATCCGATACAGCGGGATTCGCCCGGCTCCTGGTTATCCA
TCACAACCCGATCACACTGAGAAGCTGGCGATGTGGAAATTGCTTGATGC
CGAAGTAAGCGCGGATCTAAAACTCACAGAAAGTTTGGCCATGCTTCCCG
CAGCAGCTGTGTCAGGCCTCTACTTTGCCCATCAGAAGTCGCAGTACTTC
GCGGTTGGTAAAATCACTAAGGAGCAGGCGACAGATTATGGTGAGAAACG
GAAGGGATGGAGCACCGCGAAGACTGAAAAGTGGCTTCGTCCGATTTTGT
CTTATGAGACTGAGGTGTAA
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Coding sequence (CDS) from alignment at NODE_2822_length_4632_cov_3.761726:3908..4627-

>Gcaud2237.t1 ID=Gcaud2237.t1|Name=Gcaud2237.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=720bp|location=Sequence derived from alignment at NODE_2822_length_4632_cov_3.761726:3908..4627- (Gracilaria caudata M_176_S67 male)
TTGGGTTTCTTCCCGGCGAACACTATCAATCATGACGATATCGAAGTATA
CGCACCGGAGGACGATGACATAAGAGCGCACGCGATTGAAACATATCGCA
CCTTACGTCAACAAGCCGAGAAGGAGGACGAGGAGGCACCGTATCTGGCT
ATGGCTGATTTCATAGCACCGAAAGAAAGTGGAATGAAGGATTACATCGG
TATGTTTGCAGTTGGCATATTTGGCGCCGAAGATTTGATTGCCAAATACA
AACAGGACCTGGACGATTATCGCGTGATCATGTGCGAAGCTCTCGCAGAC
CGTCTTGCTGAAGCCTTTGCCGAGAAGCTGCATGAAGATGTGAGAAACAA
GCCTGAATTTTGGGGCTACACAAATGGTAATGAGAAGCTATCTACTGAGG
ACCTTATTAAGATCCGATACAGCGGGATTCGCCCGGCTCCTGGTTATCCA
TCACAACCCGATCACACTGAGAAGCTGGCGATGTGGAAATTGCTTGATGC
CGAAGTAAGCGCGGATCTAAAACTCACAGAAAGTTTGGCCATGCTTCCCG
CAGCAGCTGTGTCAGGCCTCTACTTTGCCCATCAGAAGTCGCAGTACTTC
GCGGTTGGTAAAATCACTAAGGAGCAGGCGACAGATTATGGTGAGAAACG
GAAGGGATGGAGCACCGCGAAGACTGAAAAGTGGCTTCGTCCGATTTTGT
CTTATGAGACTGAGGTGTAA
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