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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005703626.1 |
| Preferred name | dnj-25 |
| PFAMs | DIX,DnaJ |
| Max annot lvl | 2759|Eukaryota |
| GOs | GO:0006810,GO:0006897,GO:0006898,GO:0008150,GO:0016192,GO:0051179,GO:0051234,GO:0098657 |
| Evalue | 1.07e-05 |
| EggNOG OGs | KOG0431@1|root,KOG0431@2759|Eukaryota |
| Description | clathrin-coated pit assembly |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2231.t1.stop1 | Gcaud2231.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1377_length_11054_cov_8.073611 8471..8473 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2231.t1.start1 | Gcaud2231.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1377_length_11054_cov_8.073611 9535..9537 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp
MDKLELTRAREICLRMEERNRCYIDAVRYREPVSEASASQEDVRKADDKM
VELTQRTNELATTISDAIKRRTVLIESIVADTIEFQHRFYVDSVRCMERA
IDVIGPEKLANMRSEDNRVTNPCGREPTSNSHPSNGIGKRKSTSTGVANP
CGRERTCNSYPSNGIGQRESTFIGVENPCERGRTTNSYPSNGIGKRESIY
PSGGVEQKESVRRYPTGGRRTRNEYPSSRTRVTADSAPFLSLREEELLQR
EQLRKKHEREIKARADEKLATIRERERADAKKLEENDNAGAAAERKMNA* back to topspliced messenger RNA >Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACAAATTAGAGCTAACAAGGGCTCGTGAGATCTGCCTTCGCATGGA
GGAAAGGAATCGTTGTTACATTGATGCCGTCCGTTACCGTGAGCCCGTCT
CAGAAGCTTCCGCCTCCCAGGAAGACGTTCGAAAGGCTGACGACAAGATG
GTCGAGCTCACGCAGCGTACCAATGAGTTAGCTACCACCATTTCGGATGC
AATCAAACGACGTACCGTTCTCATTGAATCCATCGTTGCTGATACCATTG
AGTTTCAGCATCGTTTTTACGTCGATTCTGTTCGATGTATGGAGCGTGCT
ATTGATGTCATCGGTCCCGAAAAGCTCGCCAACATGCGCAGTGAAGATAA
CAGGGTTACCAATCCATGCGGAAGGGAACCCACGAGTAATTCCCACCCGT
CCAATGGAATCGGCAAGCGAAAGTCCACCTCTACCGGTGTTGCCAATCCA
TGCGGAAGGGAACGTACGTGTAATTCCTACCCGTCCAATGGAATCGGCCA
GCGAGAGTCCACCTTTATCGGTGTTGAAAATCCATGCGAAAGGGGACGTA
CGACTAATTCCTACCCGTCCAATGGAATCGGCAAGCGAGAGTCCATCTAC
CCCAGTGGAGGTGTAGAGCAGAAAGAATCTGTCCGCCGCTATCCGACTGG
TGGTCGTCGCACCAGAAATGAATACCCAAGTTCCAGGACGCGTGTTACAG
CCGATTCTGCGCCTTTTCTTTCTCTCAGGGAGGAAGAACTTTTGCAGCGT
GAGCAGCTCAGAAAGAAGCATGAAAGAGAGATCAAGGCCAGAGCAGATGA
GAAACTTGCGACGATTCGTGAGAGAGAGAGGGCAGATGCAAAGAAACTTG
AAGAAAATGACAATGCTGGCGCAGCTGCTGAAAGGAAGATGAACGCATAG back to topprotein sequence of Gcaud2231.t1 >Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
MDKLELTRAREICLRMEERNRCYIDAVRYREPVSEASASQEDVRKADDKM
VELTQRTNELATTISDAIKRRTVLIESIVADTIEFQHRFYVDSVRCMERA
IDVIGPEKLANMRSEDNRVTNPCGREPTSNSHPSNGIGKRKSTSTGVANP
CGRERTCNSYPSNGIGQRESTFIGVENPCERGRTTNSYPSNGIGKRESIY
PSGGVEQKESVRRYPTGGRRTRNEYPSSRTRVTADSAPFLSLREEELLQR
EQLRKKHEREIKARADEKLATIRERERADAKKLEENDNAGAAAERKMNA* back to topmRNA from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1067bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- (Gracilaria caudata M_176_S67 male)
ATGGACAAATTAGAGCTAACAAGGGCTCGTGAGATCTGCCTTCGCATGGA
GGAAAGGAATCGTTGTTACATTGATGCCGTCCGTTACCGTGAGCCCGTCT
CAGAAGCTTCCGCCTCCCAGGAAGACGTTCGAAAGGCTGACGACAAGATG
GTCGAGCTCACGCAGCGTACCAATGAGTTAGCTACCACCATTTCGGATGC
AATCAAACGACGTACCGTTCTCATTGAATCCATCGTTGCTGATACCATTG
AGTTTCAGCATCGTTTTTACGTCGATTCTGTTCGATGTATGGAGCGTGCT
ATTGATGTCATCGGTCCCGAAAAGCTCGCCAACATGCGCAGTGAAGATAA
CAGTTTCGATGACCCGCTTCCATCTTCACCAGAACCTTAAAGTTCACGAC
GATCCGTACTTGGCTCTGCTTCCGATTTCTCCACAGGGGTTACCAATCCA
TGCGGAAGGGAACCCACGAGTAATTCCCACCCGTCCAATGGAATCGGCAA
GCGAAAGTCCACCTCTACCGGTGTTGCCAATCCATGCGGAAGGGAACGTA
CGTGTAATTCCTACCCGTCCAATGGAATCGGCCAGCGAGAGTCCACCTTT
ATCGGTGCCGCCAATCCATGCGAAAGGGAACGTACGACTAATTCCTACCG
GTCCAATGAGTCGGCAAGCGAGAGTCCACCTCTTCAGGTGTTGAAAATCC
ATGCGAAAGGGGACGTACGACTAATTCCTACCCGTCCAATGGAATCGGCA
AGCGAGAGTCCATCTACCCCAGTGGAGGTGTAGAGCAGAAAGAATCTGTC
CGCCGCTATCCGACTGGTGGTCGTCGCACCAGAAATGAATACCCAAGTTC
CAGGACGCGTGTTACAGCCGATTCTGCGCCTTTTCTTTCTCTCAGGGAGG
AAGAACTTTTGCAGCGTGAGCAGCTCAGAAAGAAGCATGAAAGAGAGATC
AAGGCCAGAGCAGATGAGAAACTTGCGACGATTCGTGAGAGAGAGAGGGC
AGATGCAAAGAAACTTGAAGAAAATGACAATGCTGGCGCAGCTGCTGAAA
GGAAGATGAACGCATAG back to topCoding sequence (CDS) from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- >Gcaud2231.t1 ID=Gcaud2231.t1|Name=Gcaud2231.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=900bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:8471..9537- (Gracilaria caudata M_176_S67 male)
ATGGACAAATTAGAGCTAACAAGGGCTCGTGAGATCTGCCTTCGCATGGA
GGAAAGGAATCGTTGTTACATTGATGCCGTCCGTTACCGTGAGCCCGTCT
CAGAAGCTTCCGCCTCCCAGGAAGACGTTCGAAAGGCTGACGACAAGATG
GTCGAGCTCACGCAGCGTACCAATGAGTTAGCTACCACCATTTCGGATGC
AATCAAACGACGTACCGTTCTCATTGAATCCATCGTTGCTGATACCATTG
AGTTTCAGCATCGTTTTTACGTCGATTCTGTTCGATGTATGGAGCGTGCT
ATTGATGTCATCGGTCCCGAAAAGCTCGCCAACATGCGCAGTGAAGATAA
CAGGGTTACCAATCCATGCGGAAGGGAACCCACGAGTAATTCCCACCCGT
CCAATGGAATCGGCAAGCGAAAGTCCACCTCTACCGGTGTTGCCAATCCA
TGCGGAAGGGAACGTACGTGTAATTCCTACCCGTCCAATGGAATCGGCCA
GCGAGAGTCCACCTTTATCGGTGTTGAAAATCCATGCGAAAGGGGACGTA
CGACTAATTCCTACCCGTCCAATGGAATCGGCAAGCGAGAGTCCATCTAC
CCCAGTGGAGGTGTAGAGCAGAAAGAATCTGTCCGCCGCTATCCGACTGG
TGGTCGTCGCACCAGAAATGAATACCCAAGTTCCAGGACGCGTGTTACAG
CCGATTCTGCGCCTTTTCTTTCTCTCAGGGAGGAAGAACTTTTGCAGCGT
GAGCAGCTCAGAAAGAAGCATGAAAGAGAGATCAAGGCCAGAGCAGATGA
GAAACTTGCGACGATTCGTGAGAGAGAGAGGGCAGATGCAAAGAAACTTG
AAGAAAATGACAATGCTGGCGCAGCTGCTGAAAGGAAGATGAACGCATAG back to top
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