Gcaud2230.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2230.t1
Unique NameGcaud2230.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1377_length_11054_cov_8.073611contigNODE_1377_length_11054_cov_8.073611:5547..6164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog66373.JOFQ01000005_gene3796
PFAMsInhibitor_I9,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue2.14e-18
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,2GJYH@201174|Actinobacteria
DescriptionBelongs to the peptidase S8 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2230Gcaud2230Gracilaria caudata M_176_S67 malegeneNODE_1377_length_11054_cov_8.073611 5547..6164 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2230.t1.stop1Gcaud2230.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1377_length_11054_cov_8.073611 5547..5549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2230.t1.CDS1Gcaud2230.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1377_length_11054_cov_8.073611 5547..6164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2230.t1.exon1Gcaud2230.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1377_length_11054_cov_8.073611 5547..6164 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2230.t1.start1Gcaud2230.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1377_length_11054_cov_8.073611 6162..6164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2230.t1Gcaud2230.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1377_length_11054_cov_8.073611 5547..6164 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2230.t1 ID=Gcaud2230.t1|Name=Gcaud2230.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=206bp
MGLVLRRLSAEAQLAWRGMRHVYLFVLLIETDVGRVYTSRLVEGLEWTVD
DIQENNRTPVMVVISLSTKLSASLNEAVEKTDNFAVIVITAAGNSAHDSY
LFPSASSKSSISVGAMGKDDVRAEYSNFGQCLDIYAPGESITSAWHTGDE
AEETLRYFCVMSSCSRNRRSTACRESHNESSGNKISAVLHFYDFSFWESQ
HWYYL*
back to top

spliced messenger RNA

>Gcaud2230.t1 ID=Gcaud2230.t1|Name=Gcaud2230.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=618bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:5547..6164- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTCGTGTTGCGGCGATTATCGGCAGAAGCTCAATTGGCGTGGCG
AGGGATGCGACACGTATATCTGTTCGTGTTATTGATCGAAACGGACGTGG
GACGTGTATATACGAGTCGTCTCGTTGAAGGACTAGAATGGACCGTTGAT
GATATTCAGGAGAACAACCGCACACCAGTTATGGTAGTGATATCATTGAG
TACGAAGCTTTCAGCCTCTTTAAATGAAGCGGTCGAAAAAACAGACAACT
TCGCCGTGATTGTCATTACGGCTGCTGGGAACTCAGCACATGATAGTTAC
TTGTTCCCATCAGCTTCAAGCAAGTCATCTATTTCTGTTGGAGCAATGGG
AAAAGATGATGTTCGCGCAGAATATTCAAACTTTGGACAATGTCTCGATA
TATATGCGCCTGGAGAATCCATTACCTCTGCGTGGCATACGGGTGATGAG
GCAGAAGAAACGCTCCGGTACTTCTGCGTCATGTCCTCATGTAGCCGAAA
CCGTCGCAGTACTGCTTGCAGAGAATCCCACAATGAATCCAGCGGAAATA
AGATCAGTGCTGTACTCCACTTCTACGATTTCAGTTTTTGGGAATCACAG
CACTGGTACTACCTATAA
back to top

protein sequence of Gcaud2230.t1

>Gcaud2230.t1 ID=Gcaud2230.t1|Name=Gcaud2230.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=206bp
MGLVLRRLSAEAQLAWRGMRHVYLFVLLIETDVGRVYTSRLVEGLEWTVD
DIQENNRTPVMVVISLSTKLSASLNEAVEKTDNFAVIVITAAGNSAHDSY
LFPSASSKSSISVGAMGKDDVRAEYSNFGQCLDIYAPGESITSAWHTGDE
AEETLRYFCVMSSCSRNRRSTACRESHNESSGNKISAVLHFYDFSFWESQ
HWYYL*
back to top

mRNA from alignment at NODE_1377_length_11054_cov_8.073611:5547..6164-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2230.t1 ID=Gcaud2230.t1|Name=Gcaud2230.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=618bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:5547..6164- (Gracilaria caudata M_176_S67 male)
ATGGGACTCGTGTTGCGGCGATTATCGGCAGAAGCTCAATTGGCGTGGCG
AGGGATGCGACACGTATATCTGTTCGTGTTATTGATCGAAACGGACGTGG
GACGTGTATATACGAGTCGTCTCGTTGAAGGACTAGAATGGACCGTTGAT
GATATTCAGGAGAACAACCGCACACCAGTTATGGTAGTGATATCATTGAG
TACGAAGCTTTCAGCCTCTTTAAATGAAGCGGTCGAAAAAACAGACAACT
TCGCCGTGATTGTCATTACGGCTGCTGGGAACTCAGCACATGATAGTTAC
TTGTTCCCATCAGCTTCAAGCAAGTCATCTATTTCTGTTGGAGCAATGGG
AAAAGATGATGTTCGCGCAGAATATTCAAACTTTGGACAATGTCTCGATA
TATATGCGCCTGGAGAATCCATTACCTCTGCGTGGCATACGGGTGATGAG
GCAGAAGAAACGCTCCGGTACTTCTGCGTCATGTCCTCATGTAGCCGAAA
CCGTCGCAGTACTGCTTGCAGAGAATCCCACAATGAATCCAGCGGAAATA
AGATCAGTGCTGTACTCCACTTCTACGATTTCAGTTTTTGGGAATCACAG
CACTGGTACTACCTATAA
back to top

Coding sequence (CDS) from alignment at NODE_1377_length_11054_cov_8.073611:5547..6164-

>Gcaud2230.t1 ID=Gcaud2230.t1|Name=Gcaud2230.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=618bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:5547..6164- (Gracilaria caudata M_176_S67 male)
ATGGGACTCGTGTTGCGGCGATTATCGGCAGAAGCTCAATTGGCGTGGCG
AGGGATGCGACACGTATATCTGTTCGTGTTATTGATCGAAACGGACGTGG
GACGTGTATATACGAGTCGTCTCGTTGAAGGACTAGAATGGACCGTTGAT
GATATTCAGGAGAACAACCGCACACCAGTTATGGTAGTGATATCATTGAG
TACGAAGCTTTCAGCCTCTTTAAATGAAGCGGTCGAAAAAACAGACAACT
TCGCCGTGATTGTCATTACGGCTGCTGGGAACTCAGCACATGATAGTTAC
TTGTTCCCATCAGCTTCAAGCAAGTCATCTATTTCTGTTGGAGCAATGGG
AAAAGATGATGTTCGCGCAGAATATTCAAACTTTGGACAATGTCTCGATA
TATATGCGCCTGGAGAATCCATTACCTCTGCGTGGCATACGGGTGATGAG
GCAGAAGAAACGCTCCGGTACTTCTGCGTCATGTCCTCATGTAGCCGAAA
CCGTCGCAGTACTGCTTGCAGAGAATCCCACAATGAATCCAGCGGAAATA
AGATCAGTGCTGTACTCCACTTCTACGATTTCAGTTTTTGGGAATCACAG
CACTGGTACTACCTATAA
back to top