Gcaud2224.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2224.t1
Unique NameGcaud2224.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_746_length_18753_cov_4.651538contigNODE_746_length_18753_cov_4.651538:11756..12268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LDW6
PFAMsCupin_1
Max annot lvl2759|Eukaryota
Evalue6.93e-13
EggNOG OGs2BYKQ@1|root,2QQ4A@2759|Eukaryota
Descriptionnutrient reservoir activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2224Gcaud2224Gracilaria caudata M_176_S67 malegeneNODE_746_length_18753_cov_4.651538 11756..12268 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2224.t1.start1Gcaud2224.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_746_length_18753_cov_4.651538 11756..11758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2224.t1.CDS1Gcaud2224.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_746_length_18753_cov_4.651538 11756..12268 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2224.t1.exon1Gcaud2224.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_746_length_18753_cov_4.651538 11756..12268 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2224.t1.stop1Gcaud2224.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_746_length_18753_cov_4.651538 12266..12268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2224.t1Gcaud2224.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_746_length_18753_cov_4.651538 11756..12268 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2224.t1 ID=Gcaud2224.t1|Name=Gcaud2224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MNKTITASILILLPFITTALGSIPSFGTQTNGAIRGQLADNDFRIRPEHG
VIINNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGV
EVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISES
DCEFLSTFNSADPGLVPVNL*
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spliced messenger RNA

>Gcaud2224.t1 ID=Gcaud2224.t1|Name=Gcaud2224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:11756..12268+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGACCATCACCGCTTCCATTTTGATCCTTCTTCCCTTCATCAC
CACTGCCCTTGGTTCCATTCCAAGTTTTGGCACGCAGACCAATGGGGCGA
TTCGCGGTCAACTCGCGGATAACGACTTCCGTATCAGGCCGGAACATGGG
GTGATCATCAATAATGAAAACTTTCGAGTTCGAATTGCAGAGCTTGGGAA
CTTTCCAGCATTGGCAGGACAGGATGTCCAAACTCAGATTGTTCGTGTCA
CTCTGAAAGCAATGCAGCCGTTTATTCCTCACTATCATCCCAGGGGCGTG
GAAGTCCTCAACGCTCTTCGTGGTACTTTCCGAATCACGTTCCTATTTGA
GGGTCTTAATCCTCGTATGGTGACAAACATTATTCATACTGGAGAATCAA
CTGTTTTTCCGCAGGGGCTTATTCACGAGACGGTTTGCATTAGCGAGAGC
GACTGCGAATTTCTTTCTACTTTCAACTCGGCGGATCCGGGTCTTGTGCC
TGTCAACTTGTAG
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protein sequence of Gcaud2224.t1

>Gcaud2224.t1 ID=Gcaud2224.t1|Name=Gcaud2224.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MNKTITASILILLPFITTALGSIPSFGTQTNGAIRGQLADNDFRIRPEHG
VIINNENFRVRIAELGNFPALAGQDVQTQIVRVTLKAMQPFIPHYHPRGV
EVLNALRGTFRITFLFEGLNPRMVTNIIHTGESTVFPQGLIHETVCISES
DCEFLSTFNSADPGLVPVNL*
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mRNA from alignment at NODE_746_length_18753_cov_4.651538:11756..12268+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2224.t1 ID=Gcaud2224.t1|Name=Gcaud2224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:11756..12268+ (Gracilaria caudata M_176_S67 male)
ATGAACAAGACCATCACCGCTTCCATTTTGATCCTTCTTCCCTTCATCAC
CACTGCCCTTGGTTCCATTCCAAGTTTTGGCACGCAGACCAATGGGGCGA
TTCGCGGTCAACTCGCGGATAACGACTTCCGTATCAGGCCGGAACATGGG
GTGATCATCAATAATGAAAACTTTCGAGTTCGAATTGCAGAGCTTGGGAA
CTTTCCAGCATTGGCAGGACAGGATGTCCAAACTCAGATTGTTCGTGTCA
CTCTGAAAGCAATGCAGCCGTTTATTCCTCACTATCATCCCAGGGGCGTG
GAAGTCCTCAACGCTCTTCGTGGTACTTTCCGAATCACGTTCCTATTTGA
GGGTCTTAATCCTCGTATGGTGACAAACATTATTCATACTGGAGAATCAA
CTGTTTTTCCGCAGGGGCTTATTCACGAGACGGTTTGCATTAGCGAGAGC
GACTGCGAATTTCTTTCTACTTTCAACTCGGCGGATCCGGGTCTTGTGCC
TGTCAACTTGTAG
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Coding sequence (CDS) from alignment at NODE_746_length_18753_cov_4.651538:11756..12268+

>Gcaud2224.t1 ID=Gcaud2224.t1|Name=Gcaud2224.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:11756..12268+ (Gracilaria caudata M_176_S67 male)
ATGAACAAGACCATCACCGCTTCCATTTTGATCCTTCTTCCCTTCATCAC
CACTGCCCTTGGTTCCATTCCAAGTTTTGGCACGCAGACCAATGGGGCGA
TTCGCGGTCAACTCGCGGATAACGACTTCCGTATCAGGCCGGAACATGGG
GTGATCATCAATAATGAAAACTTTCGAGTTCGAATTGCAGAGCTTGGGAA
CTTTCCAGCATTGGCAGGACAGGATGTCCAAACTCAGATTGTTCGTGTCA
CTCTGAAAGCAATGCAGCCGTTTATTCCTCACTATCATCCCAGGGGCGTG
GAAGTCCTCAACGCTCTTCGTGGTACTTTCCGAATCACGTTCCTATTTGA
GGGTCTTAATCCTCGTATGGTGACAAACATTATTCATACTGGAGAATCAA
CTGTTTTTCCGCAGGGGCTTATTCACGAGACGGTTTGCATTAGCGAGAGC
GACTGCGAATTTCTTTCTACTTTCAACTCGGCGGATCCGGGTCTTGTGCC
TGTCAACTTGTAG
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