Gcaud2223.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2223.t1
Unique NameGcaud2223.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_746_length_18753_cov_4.651538contigNODE_746_length_18753_cov_4.651538:8499..9620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1348583.ATLH01000014_gene2685
PFAMsPectate_lyase_3
Max annot lvl976|Bacteroidetes
Evalue2.13e-102
EggNOG OGsCOG2273@1|root,COG5434@1|root,COG2273@2|Bacteria,COG5434@2|Bacteria,4NMVX@976|Bacteroidetes
DescriptionBelongs to the glycosyl hydrolase 28 family
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2223Gcaud2223Gracilaria caudata M_176_S67 malegeneNODE_746_length_18753_cov_4.651538 8499..9620 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2223.t1.stop1Gcaud2223.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_746_length_18753_cov_4.651538 8499..8501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2223.t1.CDS1Gcaud2223.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_746_length_18753_cov_4.651538 8499..9620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2223.t1.exon1Gcaud2223.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_746_length_18753_cov_4.651538 8499..9620 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2223.t1.start1Gcaud2223.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_746_length_18753_cov_4.651538 9618..9620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2223.t1Gcaud2223.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_746_length_18753_cov_4.651538 8499..9620 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2223.t1 ID=Gcaud2223.t1|Name=Gcaud2223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=374bp
MTLMTCDAKQPGDQGVGFDQNLINRNTADFPQMERWSQAGARNGIPNING
VKPDDELRGGSSKDINDKINALTSDLSKNGGSFRVLLLRDGTYQINERVN
MKSNVVVIGESRDGVRCEISMTSDRAFYFGNIRNSGLHRMTITGTWGRPK
HKWNIGDQESNFELPDNSNVSVLFSKDSRDCWIDNVKILDSADFPLRCTG
EHITMRNMVVNRVHNKNAGRGYWIILGRDNLVTKSRATQLRHISIQGGRA
EYNVLYDNNFMQEVSFHVGDLGNNLITRNRITLPADMPNGSDGQPDYRAI
MGPWSIQHEKSKLDNLLLKNTLLEENHGGAARMADDRVYKGPIFETSRGE
QQTRNFPASDIKPIGGELYPVIL*
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spliced messenger RNA

>Gcaud2223.t1 ID=Gcaud2223.t1|Name=Gcaud2223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:8499..9620- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTGATGACATGCGACGCAAAACAACCTGGTGACCAAGGAGTCGG
GTTCGATCAAAATCTCATCAACAGAAACACGGCTGATTTCCCCCAGATGG
AGCGATGGTCACAAGCAGGAGCAAGAAACGGAATTCCAAACATAAACGGC
GTCAAACCTGACGATGAACTCCGCGGAGGAAGCAGCAAGGACATCAACGA
TAAAATCAATGCACTGACGTCTGATCTTAGCAAAAACGGAGGCTCGTTTC
GTGTTTTATTGCTAAGAGATGGAACTTATCAAATCAACGAACGAGTGAAC
ATGAAAAGCAATGTAGTAGTTATTGGGGAAAGTCGGGATGGAGTTCGTTG
TGAAATAAGCATGACATCTGATAGGGCGTTCTACTTTGGAAACATCAGAA
ACAGTGGCCTGCATCGAATGACAATCACTGGCACTTGGGGAAGACCCAAG
CACAAATGGAATATCGGCGATCAGGAGAGTAACTTTGAGTTACCTGACAA
TTCGAATGTTTCCGTCTTGTTCTCGAAGGACTCTAGAGACTGTTGGATTG
ACAACGTCAAAATCCTGGATAGTGCTGACTTTCCTCTCCGCTGCACGGGA
GAGCATATTACCATGCGAAACATGGTTGTGAATCGCGTGCACAACAAGAA
CGCAGGTCGCGGCTATTGGATCATTCTGGGAAGAGATAATCTAGTCACTA
AATCGAGGGCTACGCAACTGAGACATATATCAATTCAGGGCGGTCGTGCC
GAGTACAACGTGTTGTATGACAATAACTTCATGCAGGAAGTAAGCTTTCA
CGTTGGGGACCTCGGAAACAACCTGATCACTCGGAATCGAATCACCCTTC
CAGCAGACATGCCAAACGGCAGCGACGGACAGCCGGACTATCGAGCAATT
ATGGGCCCCTGGTCCATCCAGCACGAGAAATCTAAACTGGATAACTTGTT
GCTGAAGAACACATTGCTCGAGGAGAACCATGGAGGCGCAGCTCGGATGG
CAGATGATAGAGTGTATAAGGGACCGATTTTTGAGACATCTCGCGGAGAG
CAACAGACGCGGAACTTTCCGGCCTCTGATATCAAACCCATTGGCGGAGA
GTTGTATCCCGTCATACTATGA
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protein sequence of Gcaud2223.t1

>Gcaud2223.t1 ID=Gcaud2223.t1|Name=Gcaud2223.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=374bp
MTLMTCDAKQPGDQGVGFDQNLINRNTADFPQMERWSQAGARNGIPNING
VKPDDELRGGSSKDINDKINALTSDLSKNGGSFRVLLLRDGTYQINERVN
MKSNVVVIGESRDGVRCEISMTSDRAFYFGNIRNSGLHRMTITGTWGRPK
HKWNIGDQESNFELPDNSNVSVLFSKDSRDCWIDNVKILDSADFPLRCTG
EHITMRNMVVNRVHNKNAGRGYWIILGRDNLVTKSRATQLRHISIQGGRA
EYNVLYDNNFMQEVSFHVGDLGNNLITRNRITLPADMPNGSDGQPDYRAI
MGPWSIQHEKSKLDNLLLKNTLLEENHGGAARMADDRVYKGPIFETSRGE
QQTRNFPASDIKPIGGELYPVIL*
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mRNA from alignment at NODE_746_length_18753_cov_4.651538:8499..9620-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2223.t1 ID=Gcaud2223.t1|Name=Gcaud2223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:8499..9620- (Gracilaria caudata M_176_S67 male)
ATGACGCTGATGACATGCGACGCAAAACAACCTGGTGACCAAGGAGTCGG
GTTCGATCAAAATCTCATCAACAGAAACACGGCTGATTTCCCCCAGATGG
AGCGATGGTCACAAGCAGGAGCAAGAAACGGAATTCCAAACATAAACGGC
GTCAAACCTGACGATGAACTCCGCGGAGGAAGCAGCAAGGACATCAACGA
TAAAATCAATGCACTGACGTCTGATCTTAGCAAAAACGGAGGCTCGTTTC
GTGTTTTATTGCTAAGAGATGGAACTTATCAAATCAACGAACGAGTGAAC
ATGAAAAGCAATGTAGTAGTTATTGGGGAAAGTCGGGATGGAGTTCGTTG
TGAAATAAGCATGACATCTGATAGGGCGTTCTACTTTGGAAACATCAGAA
ACAGTGGCCTGCATCGAATGACAATCACTGGCACTTGGGGAAGACCCAAG
CACAAATGGAATATCGGCGATCAGGAGAGTAACTTTGAGTTACCTGACAA
TTCGAATGTTTCCGTCTTGTTCTCGAAGGACTCTAGAGACTGTTGGATTG
ACAACGTCAAAATCCTGGATAGTGCTGACTTTCCTCTCCGCTGCACGGGA
GAGCATATTACCATGCGAAACATGGTTGTGAATCGCGTGCACAACAAGAA
CGCAGGTCGCGGCTATTGGATCATTCTGGGAAGAGATAATCTAGTCACTA
AATCGAGGGCTACGCAACTGAGACATATATCAATTCAGGGCGGTCGTGCC
GAGTACAACGTGTTGTATGACAATAACTTCATGCAGGAAGTAAGCTTTCA
CGTTGGGGACCTCGGAAACAACCTGATCACTCGGAATCGAATCACCCTTC
CAGCAGACATGCCAAACGGCAGCGACGGACAGCCGGACTATCGAGCAATT
ATGGGCCCCTGGTCCATCCAGCACGAGAAATCTAAACTGGATAACTTGTT
GCTGAAGAACACATTGCTCGAGGAGAACCATGGAGGCGCAGCTCGGATGG
CAGATGATAGAGTGTATAAGGGACCGATTTTTGAGACATCTCGCGGAGAG
CAACAGACGCGGAACTTTCCGGCCTCTGATATCAAACCCATTGGCGGAGA
GTTGTATCCCGTCATACTATGA
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Coding sequence (CDS) from alignment at NODE_746_length_18753_cov_4.651538:8499..9620-

>Gcaud2223.t1 ID=Gcaud2223.t1|Name=Gcaud2223.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1122bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:8499..9620- (Gracilaria caudata M_176_S67 male)
ATGACGCTGATGACATGCGACGCAAAACAACCTGGTGACCAAGGAGTCGG
GTTCGATCAAAATCTCATCAACAGAAACACGGCTGATTTCCCCCAGATGG
AGCGATGGTCACAAGCAGGAGCAAGAAACGGAATTCCAAACATAAACGGC
GTCAAACCTGACGATGAACTCCGCGGAGGAAGCAGCAAGGACATCAACGA
TAAAATCAATGCACTGACGTCTGATCTTAGCAAAAACGGAGGCTCGTTTC
GTGTTTTATTGCTAAGAGATGGAACTTATCAAATCAACGAACGAGTGAAC
ATGAAAAGCAATGTAGTAGTTATTGGGGAAAGTCGGGATGGAGTTCGTTG
TGAAATAAGCATGACATCTGATAGGGCGTTCTACTTTGGAAACATCAGAA
ACAGTGGCCTGCATCGAATGACAATCACTGGCACTTGGGGAAGACCCAAG
CACAAATGGAATATCGGCGATCAGGAGAGTAACTTTGAGTTACCTGACAA
TTCGAATGTTTCCGTCTTGTTCTCGAAGGACTCTAGAGACTGTTGGATTG
ACAACGTCAAAATCCTGGATAGTGCTGACTTTCCTCTCCGCTGCACGGGA
GAGCATATTACCATGCGAAACATGGTTGTGAATCGCGTGCACAACAAGAA
CGCAGGTCGCGGCTATTGGATCATTCTGGGAAGAGATAATCTAGTCACTA
AATCGAGGGCTACGCAACTGAGACATATATCAATTCAGGGCGGTCGTGCC
GAGTACAACGTGTTGTATGACAATAACTTCATGCAGGAAGTAAGCTTTCA
CGTTGGGGACCTCGGAAACAACCTGATCACTCGGAATCGAATCACCCTTC
CAGCAGACATGCCAAACGGCAGCGACGGACAGCCGGACTATCGAGCAATT
ATGGGCCCCTGGTCCATCCAGCACGAGAAATCTAAACTGGATAACTTGTT
GCTGAAGAACACATTGCTCGAGGAGAACCATGGAGGCGCAGCTCGGATGG
CAGATGATAGAGTGTATAAGGGACCGATTTTTGAGACATCTCGCGGAGAG
CAACAGACGCGGAACTTTCCGGCCTCTGATATCAAACCCATTGGCGGAGA
GTTGTATCCCGTCATACTATGA
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