Gcaud2208.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2208.t1
Unique NameGcaud2208.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:74831..75300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2208Gcaud2208Gracilaria caudata M_176_S67 malegeneNODE_19_length_78712_cov_4.326007 74831..75300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2208.t1Gcaud2208.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_19_length_78712_cov_4.326007 74831..75300 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2208.t1.stop1Gcaud2208.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_19_length_78712_cov_4.326007 74831..74833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2208.t1.CDS1Gcaud2208.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 74831..74858 -
Gcaud2208.t1.CDS2Gcaud2208.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 74915..75057 -
Gcaud2208.t1.CDS3Gcaud2208.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 75145..75300 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2208.t1.exon1Gcaud2208.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 74831..74858 -
Gcaud2208.t1.exon2Gcaud2208.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 74915..75057 -
Gcaud2208.t1.exon3Gcaud2208.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 75145..75300 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2208.t1.intron1Gcaud2208.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_19_length_78712_cov_4.326007 74859..74914 -
Gcaud2208.t1.intron2Gcaud2208.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_19_length_78712_cov_4.326007 75058..75144 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2208.t1.start1Gcaud2208.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_19_length_78712_cov_4.326007 75298..75300 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2208.t1 ID=Gcaud2208.t1|Name=Gcaud2208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=109bp
MDVVHNHPNTAFHNCEHHDAWIEVYHSRLSWKVSQISFKRDSETWIPFGK
FKLIDASDIKPGFQAFRIIARRLEFKFANNTETELDNNVGRNYVIESPGR
LPEGSETK*
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spliced messenger RNA

>Gcaud2208.t1 ID=Gcaud2208.t1|Name=Gcaud2208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=327bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:74831..75300- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTAGTCCACAATCATCCAAACACCGCGTTTCACAATTGTGAACA
TCATGATGCTTGGATAGAAGTATACCACTCAAGACTCAGTTGGAAAGTTT
CTCAAATTTCTTTCAAGAGAGACTCAGAGACCTGGATTCCGTTTGGTAAA
TTTAAGCTCATAGACGCTTCAGATATAAAGCCTGGATTTCAAGCTTTCCG
CATCATAGCGAGGCGACTTGAGTTCAAGTTCGCGAACAACACAGAAACAG
AACTTGACAATAACGTTGGGCGGAACTATGTGATTGAGTCTCCTGGACGA
CTGCCTGAAGGCTCTGAGACCAAATGA
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protein sequence of Gcaud2208.t1

>Gcaud2208.t1 ID=Gcaud2208.t1|Name=Gcaud2208.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=109bp
MDVVHNHPNTAFHNCEHHDAWIEVYHSRLSWKVSQISFKRDSETWIPFGK
FKLIDASDIKPGFQAFRIIARRLEFKFANNTETELDNNVGRNYVIESPGR
LPEGSETK*
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mRNA from alignment at NODE_19_length_78712_cov_4.326007:74831..75300-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2208.t1 ID=Gcaud2208.t1|Name=Gcaud2208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=470bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:74831..75300- (Gracilaria caudata M_176_S67 male)
ATGGACGTAGTCCACAATCATCCAAACACCGCGTTTCACAATTGTGAACA
TCATGATGCTTGGATAGAAGTATACCACTCAAGACTCAGTTGGAAAGTTT
CTCAAATTTCTTTCAAGAGAGACTCAGAGACCTGGATTCCGTTTGGTAAA
TTTAAGGTAAGCCTTTGCGCTCTGCAAGCGTGTTTCCTCGCAGCATTCAA
GGACAGCTTCTCACAATTGAACAAATGTTCCGTACCTCAACAGCTCATAG
ACGCTTCAGATATAAAGCCTGGATTTCAAGCTTTCCGCATCATAGCGAGG
CGACTTGAGTTCAAGTTCGCGAACAACACAGAAACAGAACTTGACAATAA
CGTTGGGCGGAACTATGTGATTGAGTCTCCTGGACGGTACGTGGTTGAAA
GCGGTAGCGGTTGTCGGCGAGTGTCTGACGCACAAATAGCAGACTGCCTG
AAGGCTCTGAGACCAAATGA
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Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:74831..75300-

>Gcaud2208.t1 ID=Gcaud2208.t1|Name=Gcaud2208.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=327bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:74831..75300- (Gracilaria caudata M_176_S67 male)
ATGGACGTAGTCCACAATCATCCAAACACCGCGTTTCACAATTGTGAACA
TCATGATGCTTGGATAGAAGTATACCACTCAAGACTCAGTTGGAAAGTTT
CTCAAATTTCTTTCAAGAGAGACTCAGAGACCTGGATTCCGTTTGGTAAA
TTTAAGCTCATAGACGCTTCAGATATAAAGCCTGGATTTCAAGCTTTCCG
CATCATAGCGAGGCGACTTGAGTTCAAGTTCGCGAACAACACAGAAACAG
AACTTGACAATAACGTTGGGCGGAACTATGTGATTGAGTCTCCTGGACGA
CTGCCTGAAGGCTCTGAGACCAAATGA
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