Gcaud2201.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2201.t1
Unique Name	Gcaud2201.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	550

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:59459..61162 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	326427.Cagg_3755
PFAMs	GATase1_like,VWA,VWA_2
Max annot lvl	32061\|Chloroflexia
Evalue	4.34e-05
EggNOG OGs	COG2304@1\|root,COG5426@1\|root,COG2304@2\|Bacteria,COG5426@2\|Bacteria,2GBRR@200795\|Chloroflexi,376B2@32061\|Chloroflexia
Description	PFAM von Willebrand factor type A
COG category	D

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2201	Gcaud2201	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 59459..61162 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2201.t1	Gcaud2201.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 59459..61162 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2201.t1.start1	Gcaud2201.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 59459..59461 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2201.t1.CDS1	Gcaud2201.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 59459..60187 +
Gcaud2201.t1.CDS2	Gcaud2201.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 60242..61162 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2201.t1.exon1	Gcaud2201.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 59459..60187 +
Gcaud2201.t1.exon2	Gcaud2201.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 60242..61162 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2201.t1.intron1	Gcaud2201.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_19_length_78712_cov_4.326007 60188..60241 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2201.t1.stop1	Gcaud2201.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 61160..61162 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:59459..61162+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:59459..61162+

mRNA sequence

>Gcaud2201.t1 ID=Gcaud2201.t1|Name=Gcaud2201.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=550bp
MRSFGLFFFALLGCLTVSLAVPTVIRQDGNADTCPLDGVCFALDQSGSIF
SNYQILQAFVVAVARDVEANSPQTLFSAFGFSTTVNPIQSSTSEVEGVFV
PAVNAPVTPSGTTNMYAGLNACFNELTDLTGNRVIVLLTDGVDNGSPFAI
ELAPRVRDQGIVIITIGIGSGVSSLYLQQLATSPAFFIASAFTALPIEVF
RLSQMMCELPVVSPMPTDDDFLEPEISVTPEVTETPEVTETPEVTETPEV
TETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTE
TPDLSETPEPSSTPEVIVDPATPSPEVSETPVISETPFVSETPIISETPV
VSETPVVSETPIVTETPIVTETPIFTETPIVTETPIVTEAPPITPTPADA
CELAFQECGFTFVGTPTVPTFVLPTVPDQPFTPRIISSDPSINIGVLNTN
DIVPEFIEPDGTVVPITDETDASPPFAPTQFKPFSIPGDTGSAIGHQTFQ
GNQALVIGDRCVRVFFSSFQVLSTVEPFFVIGNVEATVDDNACVVFRTA*

spliced messenger RNA

>Gcaud2201.t1 ID=Gcaud2201.t1|Name=Gcaud2201.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:59459..61162+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGCTTTGGTCTCTTTTTCTTCGCCCTCTTGGGTTGTTTGACAGT
TTCACTTGCCGTGCCTACCGTGATTCGTCAAGATGGAAATGCAGATACTT
GTCCACTAGACGGGGTGTGTTTTGCTTTGGACCAGAGTGGATCAATCTTC
TCCAACTATCAGATTCTACAGGCCTTTGTTGTTGCCGTCGCTCGAGATGT
TGAAGCTAATTCCCCGCAAACTCTCTTTTCGGCTTTCGGGTTTTCAACCA
CTGTGAATCCTATTCAGTCCTCCACTTCAGAAGTGGAAGGAGTATTTGTT
CCTGCTGTGAATGCTCCCGTCACACCTTCTGGCACTACGAACATGTACGC
TGGTCTGAATGCATGTTTCAATGAGCTTACAGACCTGACTGGCAACAGGG
TGATCGTTCTTTTGACGGACGGCGTGGACAATGGATCTCCCTTCGCAATT
GAACTCGCTCCAAGAGTTAGGGACCAAGGAATTGTAATCATCACTATTGG
AATTGGAAGTGGTGTATCCAGTCTTTACCTTCAGCAACTTGCGACGAGCC
CGGCCTTTTTCATTGCTTCGGCATTTACTGCATTACCGATCGAAGTGTTT
AGACTTTCGCAGATGATGTGCGAGCTCCCTGTAGTTTCTCCGATGCCAAC
TGACGATGACTTCTTGGAACCTGAAATAAGCGTAACCCCAGAGGTAACTG
AAACCCCAGAGGTAACTGAAACCCCGGAGGTGACTGAAACTCCAGAGGTG
ACAGAAACTCCAGAGGTGACTGAAACTCCAGAGGTGACAGAAACTCCGGA
GGTGACAGAAACTCCAGAGGTGACAGAAACTCCAGAGGTGACAGAAACCC
CTGAGGTGACGGAAACCCCCGAGGTGACGGAAACCCCCGAGGTGACGGAA
ACCCCAGATCTCTCCGAAACCCCAGAACCAAGTTCCACCCCTGAGGTGAT
TGTTGACCCCGCGACGCCGAGTCCGGAAGTTTCTGAGACACCAGTCATAT
CTGAAACGCCGTTCGTTTCCGAAACGCCAATCATATCCGAAACACCAGTT
GTATCCGAGACGCCAGTTGTGTCCGAGACGCCAATCGTGACTGAGACACC
AATCGTAACTGAAACGCCAATCTTTACTGAAACGCCAATCGTAACTGAAA
CGCCAATTGTAACCGAAGCACCCCCCATCACACCTACCCCCGCGGACGCA
TGTGAATTGGCGTTCCAGGAGTGTGGCTTCACTTTCGTTGGCACACCAAC
AGTGCCAACGTTCGTCCTCCCAACTGTTCCGGATCAGCCGTTCACGCCCA
GAATAATCTCAAGCGATCCAAGCATCAATATCGGCGTTCTGAACACCAAC
GACATCGTCCCAGAATTCATTGAACCAGATGGAACTGTTGTGCCCATTAC
GGATGAGACGGATGCCTCCCCGCCGTTCGCACCGACGCAGTTCAAGCCGT
TCTCGATCCCTGGTGATACTGGCTCTGCTATTGGCCATCAGACGTTCCAA
GGCAATCAAGCACTGGTGATCGGCGATCGATGTGTGCGCGTGTTCTTCTC
TTCTTTCCAAGTGCTTTCGACCGTAGAGCCATTCTTTGTGATCGGCAATG
TTGAAGCCACCGTCGACGACAATGCGTGCGTTGTGTTCAGAACCGCGTAG

protein sequence of Gcaud2201.t1

>Gcaud2201.t1 ID=Gcaud2201.t1|Name=Gcaud2201.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=550bp
MRSFGLFFFALLGCLTVSLAVPTVIRQDGNADTCPLDGVCFALDQSGSIF
SNYQILQAFVVAVARDVEANSPQTLFSAFGFSTTVNPIQSSTSEVEGVFV
PAVNAPVTPSGTTNMYAGLNACFNELTDLTGNRVIVLLTDGVDNGSPFAI
ELAPRVRDQGIVIITIGIGSGVSSLYLQQLATSPAFFIASAFTALPIEVF
RLSQMMCELPVVSPMPTDDDFLEPEISVTPEVTETPEVTETPEVTETPEV
TETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTE
TPDLSETPEPSSTPEVIVDPATPSPEVSETPVISETPFVSETPIISETPV
VSETPVVSETPIVTETPIVTETPIFTETPIVTETPIVTEAPPITPTPADA
CELAFQECGFTFVGTPTVPTFVLPTVPDQPFTPRIISSDPSINIGVLNTN
DIVPEFIEPDGTVVPITDETDASPPFAPTQFKPFSIPGDTGSAIGHQTFQ
GNQALVIGDRCVRVFFSSFQVLSTVEPFFVIGNVEATVDDNACVVFRTA*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:59459..61162+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2201.t1 ID=Gcaud2201.t1|Name=Gcaud2201.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:59459..61162+ (Gracilaria caudata M_176_S67 male)
ATGCGAAGCTTTGGTCTCTTTTTCTTCGCCCTCTTGGGTTGTTTGACAGT
TTCACTTGCCGTGCCTACCGTGATTCGTCAAGATGGAAATGCAGATACTT
GTCCACTAGACGGGGTGTGTTTTGCTTTGGACCAGAGTGGATCAATCTTC
TCCAACTATCAGATTCTACAGGCCTTTGTTGTTGCCGTCGCTCGAGATGT
TGAAGCTAATTCCCCGCAAACTCTCTTTTCGGCTTTCGGGTTTTCAACCA
CTGTGAATCCTATTCAGTCCTCCACTTCAGAAGTGGAAGGAGTATTTGTT
CCTGCTGTGAATGCTCCCGTCACACCTTCTGGCACTACGAACATGTACGC
TGGTCTGAATGCATGTTTCAATGAGCTTACAGACCTGACTGGCAACAGGG
TGATCGTTCTTTTGACGGACGGCGTGGACAATGGATCTCCCTTCGCAATT
GAACTCGCTCCAAGAGTTAGGGACCAAGGAATTGTAATCATCACTATTGG
AATTGGAAGTGGTGTATCCAGTCTTTACCTTCAGCAACTTGCGACGAGCC
CGGCCTTTTTCATTGCTTCGGCATTTACTGCATTACCGATCGAAGTGTTT
AGACTTTCGCAGATGATGTGCGAGCTCCCTGTAGTTTCTCCGATGCCAAC
TGACGATGACTTCTTGGAACCTGAAATAAGCGTAACCCCAGAGGTAACTG
AAACCCCAGAGGTAACTGAAACCCCGGAGGTAACTGAAACCCCAGAGGTG
ACTGAAACCCCGGAGGTGACTGAAACCCCGGAGGTGACTGAAACTCCAGA
GGTGACAGAAACTCCAGAGGTGACTGAAACTCCAGAGGTGACAGAAACTC
CGGAGGTGACAGAAACTCCAGAGGTGACAGAAACTCCAGAGGTGACAGAA
ACCCCTGAGGTGACGGAAACCCCCGAGGTGACGGAAACCCCCGAGGTGAC
GGAAACCCCAGATCTCTCCGAAACCCCAGAACCAAGTTCCACCCCTGAGG
TGATTGTTGACCCCGCGACGCCGAGTCCGGAAGTTTCTGAGACACCAGTC
ATATCTGAAACGCCGTTCGTTTCCGAAACGCCAATCATATCCGAAACACC
AGTTGTATCCGAGACGCCAGTTGTGTCCGAGACGCCAATCGTGACTGAGA
CACCAATCGTAACTGAAACGCCAATCTTTACTGAAACGCCAATCGTAACT
GAAACGCCAATTGTAACCGAAGCACCCCCCATCACACCTACCCCCGCGGA
CGCATGTGAATTGGCGTTCCAGGAGTGTGGCTTCACTTTCGTTGGCACAC
CAACAGTGCCAACGTTCGTCCTCCCAACTGTTCCGGATCAGCCGTTCACG
CCCAGAATAATCTCAAGCGATCCAAGCATCAATATCGGCGTTCTGAACAC
CAACGACATCGTCCCAGAATTCATTGAACCAGATGGAACTGTTGTGCCCA
TTACGGATGAGACGGATGCCTCCCCGCCGTTCGCACCGACGCAGTTCAAG
CCGTTCTCGATCCCTGGTGATACTGGCTCTGCTATTGGCCATCAGACGTT
CCAAGGCAATCAAGCACTGGTGATCGGCGATCGATGTGTGCGCGTGTTCT
TCTCTTCTTTCCAAGTGCTTTCGACCGTAGAGCCATTCTTTGTGATCGGC
AATGTTGAAGCCACCGTCGACGACAATGCGTGCGTTGTGTTCAGAACCGC
GTAG

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:59459..61162+

>Gcaud2201.t1 ID=Gcaud2201.t1|Name=Gcaud2201.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1650bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:59459..61162+ (Gracilaria caudata M_176_S67 male)
ATGCGAAGCTTTGGTCTCTTTTTCTTCGCCCTCTTGGGTTGTTTGACAGT
TTCACTTGCCGTGCCTACCGTGATTCGTCAAGATGGAAATGCAGATACTT
GTCCACTAGACGGGGTGTGTTTTGCTTTGGACCAGAGTGGATCAATCTTC
TCCAACTATCAGATTCTACAGGCCTTTGTTGTTGCCGTCGCTCGAGATGT
TGAAGCTAATTCCCCGCAAACTCTCTTTTCGGCTTTCGGGTTTTCAACCA
CTGTGAATCCTATTCAGTCCTCCACTTCAGAAGTGGAAGGAGTATTTGTT
CCTGCTGTGAATGCTCCCGTCACACCTTCTGGCACTACGAACATGTACGC
TGGTCTGAATGCATGTTTCAATGAGCTTACAGACCTGACTGGCAACAGGG
TGATCGTTCTTTTGACGGACGGCGTGGACAATGGATCTCCCTTCGCAATT
GAACTCGCTCCAAGAGTTAGGGACCAAGGAATTGTAATCATCACTATTGG
AATTGGAAGTGGTGTATCCAGTCTTTACCTTCAGCAACTTGCGACGAGCC
CGGCCTTTTTCATTGCTTCGGCATTTACTGCATTACCGATCGAAGTGTTT
AGACTTTCGCAGATGATGTGCGAGCTCCCTGTAGTTTCTCCGATGCCAAC
TGACGATGACTTCTTGGAACCTGAAATAAGCGTAACCCCAGAGGTAACTG
AAACCCCAGAGGTAACTGAAACCCCGGAGGTGACTGAAACTCCAGAGGTG
ACAGAAACTCCAGAGGTGACTGAAACTCCAGAGGTGACAGAAACTCCGGA
GGTGACAGAAACTCCAGAGGTGACAGAAACTCCAGAGGTGACAGAAACCC
CTGAGGTGACGGAAACCCCCGAGGTGACGGAAACCCCCGAGGTGACGGAA
ACCCCAGATCTCTCCGAAACCCCAGAACCAAGTTCCACCCCTGAGGTGAT
TGTTGACCCCGCGACGCCGAGTCCGGAAGTTTCTGAGACACCAGTCATAT
CTGAAACGCCGTTCGTTTCCGAAACGCCAATCATATCCGAAACACCAGTT
GTATCCGAGACGCCAGTTGTGTCCGAGACGCCAATCGTGACTGAGACACC
AATCGTAACTGAAACGCCAATCTTTACTGAAACGCCAATCGTAACTGAAA
CGCCAATTGTAACCGAAGCACCCCCCATCACACCTACCCCCGCGGACGCA
TGTGAATTGGCGTTCCAGGAGTGTGGCTTCACTTTCGTTGGCACACCAAC
AGTGCCAACGTTCGTCCTCCCAACTGTTCCGGATCAGCCGTTCACGCCCA
GAATAATCTCAAGCGATCCAAGCATCAATATCGGCGTTCTGAACACCAAC
GACATCGTCCCAGAATTCATTGAACCAGATGGAACTGTTGTGCCCATTAC
GGATGAGACGGATGCCTCCCCGCCGTTCGCACCGACGCAGTTCAAGCCGT
TCTCGATCCCTGGTGATACTGGCTCTGCTATTGGCCATCAGACGTTCCAA
GGCAATCAAGCACTGGTGATCGGCGATCGATGTGTGCGCGTGTTCTTCTC
TTCTTTCCAAGTGCTTTCGACCGTAGAGCCATTCTTTGTGATCGGCAATG
TTGAAGCCACCGTCGACGACAATGCGTGCGTTGTGTTCAGAACCGCGTAG