Gcaud2199.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2199.t1
Unique Name	Gcaud2199.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	744

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:46766..48997 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ21093
PFAMs	CBF,NOC3p
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14834
Evalue	1.09e-30
EggNOG OGs	COG5117@1\|root,KOG2153@2759\|Eukaryota,37J9B@33090\|Viridiplantae,3GDPR@35493\|Streptophyta
Description	Nucleolar complex protein 3 homolog
COG category	JU
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2199	Gcaud2199	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 46766..48997 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2199.t1.stop1	Gcaud2199.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 46766..46768 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2199.t1.CDS1	Gcaud2199.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 46766..48997 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2199.t1.exon1	Gcaud2199.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 46766..48997 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2199.t1.start1	Gcaud2199.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 48995..48997 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2199.t1	Gcaud2199.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 46766..48997 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:46766..48997-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:46766..48997-

mRNA sequence

>Gcaud2199.t1 ID=Gcaud2199.t1|Name=Gcaud2199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp
MTSRRRKKNTKEQKAPSWEVSRTFAINERQPVPLPVVQADGIVKKAQQSR
PKFIAKAKAGKGKNALLRQALKDAEEVGKPEANESTERGAKRARMRTRHA
LEKYEQQIEKMESIKVNIASIASRITSNPEEHVSMLRELRSMGRESKGKI
AALVLLTESQVYKDIAPGYRIRRVTEKEAETKVSKETKRLRDFEETLLSS
YQRFIKSCISLSNWRFSGIRQTLASRNMTKVRNAACKALSELLRSLPHFN
EAEVIATTVCAHVCNQEADIRRLCSEALSSVLHNAHRASGHSLDLCVAIA
KNLAKVAGKKKRSAPAELVAPLTEIQFANFARLPTSNKSKKEPKGSKRLS
KIKRKRQMKQEKHAVDEKEVEKDMREADAEATPQELFGAKKSLLNSVCHA
YFNIIRSASNDVDAVEEAESNKPRAKKRKPPAALSPALRGLLRISTFISA
DIIDAVLGALTPLLESKQLPLSTRFRCLSAAYAVLGVNARSQKVSADSFT
GDTRALDTALYTAIGALYTSEMPLREDESITYDAIEAVVASTSFRDMPAA
RSAALARRLAITATNAPVHSCAMALLYAAQMLMPASVVSPIFAQLDENNE
LKMIDDVGLVQNFNMETDDPDISTAERSASWELCSLANSFHPAIQDLAKQ
CAAGNCGSRLARSTTSVVYKAKLFSNAQGGFNPLPQAEKQGSSKRNRIET
EPPAVYKPLYSEQEERHIDEVFRKDDTDMQNFFLAQWHNRELD*

spliced messenger RNA

>Gcaud2199.t1 ID=Gcaud2199.t1|Name=Gcaud2199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:46766..48997- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGCAGAAGGCGCAAGAAGAACACAAAGGAACAAAAGGCACCCTC
ATGGGAAGTGTCGAGGACCTTTGCTATTAATGAACGCCAGCCTGTTCCAC
TTCCCGTTGTTCAGGCAGATGGTATCGTAAAGAAGGCACAACAGTCTCGT
CCAAAATTCATAGCCAAAGCGAAGGCCGGGAAAGGGAAGAATGCACTTCT
TAGACAGGCTTTGAAAGATGCCGAAGAAGTTGGGAAGCCTGAAGCGAACG
AGAGCACAGAAAGAGGCGCGAAGCGAGCGCGCATGCGTACTCGTCACGCT
CTCGAGAAATATGAGCAGCAAATCGAAAAAATGGAATCGATCAAAGTCAA
CATCGCGTCTATTGCATCAAGAATCACTTCTAATCCAGAAGAACATGTTT
CGATGTTGCGAGAACTTCGTTCCATGGGACGTGAATCCAAGGGCAAAATA
GCTGCTCTAGTTTTACTTACAGAGTCGCAGGTGTACAAGGATATCGCTCC
GGGCTATAGAATACGTCGGGTAACTGAGAAAGAAGCGGAAACAAAAGTGT
CTAAAGAGACGAAACGATTGCGAGACTTTGAAGAGACTCTTCTTTCAAGC
TATCAGCGGTTCATAAAATCATGCATCAGTCTTTCCAACTGGAGATTTTC
GGGTATCAGACAGACCCTTGCGAGTCGAAATATGACCAAAGTTCGCAACG
CAGCGTGTAAGGCACTATCAGAACTCCTTCGCTCCTTGCCACATTTCAAC
GAAGCAGAAGTTATCGCGACGACTGTCTGTGCTCACGTATGCAATCAGGA
GGCTGATATCCGAAGATTGTGTTCTGAAGCACTTTCTTCAGTTCTTCATA
ACGCCCATCGAGCATCTGGACACTCTCTTGATCTATGTGTTGCGATTGCA
AAGAATCTTGCAAAGGTCGCTGGGAAGAAGAAGCGATCAGCACCGGCAGA
GCTTGTCGCCCCGCTCACAGAAATTCAGTTCGCTAACTTTGCACGGCTTC
CAACGTCAAACAAATCAAAGAAAGAACCAAAGGGGTCAAAGCGATTGAGC
AAAATTAAACGAAAGCGCCAGATGAAACAAGAAAAACATGCGGTAGATGA
GAAGGAAGTCGAAAAGGATATGCGTGAAGCAGATGCGGAAGCGACTCCAC
AGGAACTTTTCGGTGCTAAGAAGAGCTTGTTGAACTCTGTATGCCATGCG
TACTTCAACATAATCCGCTCGGCTTCGAATGATGTGGACGCCGTGGAAGA
AGCCGAAAGTAACAAACCCAGGGCTAAGAAGAGGAAACCACCAGCCGCAC
TTTCACCAGCGTTAAGAGGACTGTTAAGGATATCTACGTTTATCAGCGCG
GACATCATTGATGCGGTTCTAGGAGCGTTAACACCCCTGCTAGAGAGCAA
ACAGCTACCGCTAAGCACTCGGTTTCGTTGTCTTTCAGCCGCATATGCAG
TTTTGGGTGTGAATGCTCGATCTCAGAAAGTAAGTGCCGATTCTTTTACT
GGAGACACGAGAGCGCTTGACACTGCTCTTTATACTGCCATAGGAGCGCT
ATACACGTCAGAAATGCCCTTGCGAGAGGACGAGTCAATCACATATGACG
CTATTGAAGCTGTGGTGGCATCAACAAGTTTTCGTGACATGCCTGCAGCA
AGAAGTGCTGCGCTTGCCAGAAGACTTGCTATCACTGCGACAAACGCACC
TGTTCATTCGTGCGCAATGGCGCTGTTGTATGCAGCTCAGATGTTGATGC
CTGCATCCGTTGTTTCGCCCATTTTTGCTCAACTTGATGAGAACAATGAA
CTGAAAATGATTGATGACGTGGGCCTGGTTCAGAATTTCAATATGGAAAC
GGACGATCCGGACATTTCTACGGCCGAGCGAAGCGCTTCATGGGAATTAT
GCAGTCTTGCAAACTCGTTCCATCCAGCGATTCAGGATCTTGCAAAACAA
TGTGCTGCCGGAAATTGTGGGTCCAGACTTGCGAGAAGTACGACGAGCGT
TGTGTATAAGGCTAAATTGTTCTCAAACGCACAGGGAGGATTTAATCCAC
TGCCACAAGCTGAAAAGCAAGGCAGTTCAAAGCGCAATCGCATAGAAACG
GAACCGCCCGCGGTATACAAACCGTTGTATTCTGAACAAGAGGAACGACA
TATAGATGAGGTTTTCCGAAAAGATGACACAGACATGCAGAACTTTTTCT
TGGCCCAATGGCACAACAGAGAACTCGACTAG

protein sequence of Gcaud2199.t1

>Gcaud2199.t1 ID=Gcaud2199.t1|Name=Gcaud2199.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=744bp
MTSRRRKKNTKEQKAPSWEVSRTFAINERQPVPLPVVQADGIVKKAQQSR
PKFIAKAKAGKGKNALLRQALKDAEEVGKPEANESTERGAKRARMRTRHA
LEKYEQQIEKMESIKVNIASIASRITSNPEEHVSMLRELRSMGRESKGKI
AALVLLTESQVYKDIAPGYRIRRVTEKEAETKVSKETKRLRDFEETLLSS
YQRFIKSCISLSNWRFSGIRQTLASRNMTKVRNAACKALSELLRSLPHFN
EAEVIATTVCAHVCNQEADIRRLCSEALSSVLHNAHRASGHSLDLCVAIA
KNLAKVAGKKKRSAPAELVAPLTEIQFANFARLPTSNKSKKEPKGSKRLS
KIKRKRQMKQEKHAVDEKEVEKDMREADAEATPQELFGAKKSLLNSVCHA
YFNIIRSASNDVDAVEEAESNKPRAKKRKPPAALSPALRGLLRISTFISA
DIIDAVLGALTPLLESKQLPLSTRFRCLSAAYAVLGVNARSQKVSADSFT
GDTRALDTALYTAIGALYTSEMPLREDESITYDAIEAVVASTSFRDMPAA
RSAALARRLAITATNAPVHSCAMALLYAAQMLMPASVVSPIFAQLDENNE
LKMIDDVGLVQNFNMETDDPDISTAERSASWELCSLANSFHPAIQDLAKQ
CAAGNCGSRLARSTTSVVYKAKLFSNAQGGFNPLPQAEKQGSSKRNRIET
EPPAVYKPLYSEQEERHIDEVFRKDDTDMQNFFLAQWHNRELD*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:46766..48997-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2199.t1 ID=Gcaud2199.t1|Name=Gcaud2199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:46766..48997- (Gracilaria caudata M_176_S67 male)
ATGACTAGCAGAAGGCGCAAGAAGAACACAAAGGAACAAAAGGCACCCTC
ATGGGAAGTGTCGAGGACCTTTGCTATTAATGAACGCCAGCCTGTTCCAC
TTCCCGTTGTTCAGGCAGATGGTATCGTAAAGAAGGCACAACAGTCTCGT
CCAAAATTCATAGCCAAAGCGAAGGCCGGGAAAGGGAAGAATGCACTTCT
TAGACAGGCTTTGAAAGATGCCGAAGAAGTTGGGAAGCCTGAAGCGAACG
AGAGCACAGAAAGAGGCGCGAAGCGAGCGCGCATGCGTACTCGTCACGCT
CTCGAGAAATATGAGCAGCAAATCGAAAAAATGGAATCGATCAAAGTCAA
CATCGCGTCTATTGCATCAAGAATCACTTCTAATCCAGAAGAACATGTTT
CGATGTTGCGAGAACTTCGTTCCATGGGACGTGAATCCAAGGGCAAAATA
GCTGCTCTAGTTTTACTTACAGAGTCGCAGGTGTACAAGGATATCGCTCC
GGGCTATAGAATACGTCGGGTAACTGAGAAAGAAGCGGAAACAAAAGTGT
CTAAAGAGACGAAACGATTGCGAGACTTTGAAGAGACTCTTCTTTCAAGC
TATCAGCGGTTCATAAAATCATGCATCAGTCTTTCCAACTGGAGATTTTC
GGGTATCAGACAGACCCTTGCGAGTCGAAATATGACCAAAGTTCGCAACG
CAGCGTGTAAGGCACTATCAGAACTCCTTCGCTCCTTGCCACATTTCAAC
GAAGCAGAAGTTATCGCGACGACTGTCTGTGCTCACGTATGCAATCAGGA
GGCTGATATCCGAAGATTGTGTTCTGAAGCACTTTCTTCAGTTCTTCATA
ACGCCCATCGAGCATCTGGACACTCTCTTGATCTATGTGTTGCGATTGCA
AAGAATCTTGCAAAGGTCGCTGGGAAGAAGAAGCGATCAGCACCGGCAGA
GCTTGTCGCCCCGCTCACAGAAATTCAGTTCGCTAACTTTGCACGGCTTC
CAACGTCAAACAAATCAAAGAAAGAACCAAAGGGGTCAAAGCGATTGAGC
AAAATTAAACGAAAGCGCCAGATGAAACAAGAAAAACATGCGGTAGATGA
GAAGGAAGTCGAAAAGGATATGCGTGAAGCAGATGCGGAAGCGACTCCAC
AGGAACTTTTCGGTGCTAAGAAGAGCTTGTTGAACTCTGTATGCCATGCG
TACTTCAACATAATCCGCTCGGCTTCGAATGATGTGGACGCCGTGGAAGA
AGCCGAAAGTAACAAACCCAGGGCTAAGAAGAGGAAACCACCAGCCGCAC
TTTCACCAGCGTTAAGAGGACTGTTAAGGATATCTACGTTTATCAGCGCG
GACATCATTGATGCGGTTCTAGGAGCGTTAACACCCCTGCTAGAGAGCAA
ACAGCTACCGCTAAGCACTCGGTTTCGTTGTCTTTCAGCCGCATATGCAG
TTTTGGGTGTGAATGCTCGATCTCAGAAAGTAAGTGCCGATTCTTTTACT
GGAGACACGAGAGCGCTTGACACTGCTCTTTATACTGCCATAGGAGCGCT
ATACACGTCAGAAATGCCCTTGCGAGAGGACGAGTCAATCACATATGACG
CTATTGAAGCTGTGGTGGCATCAACAAGTTTTCGTGACATGCCTGCAGCA
AGAAGTGCTGCGCTTGCCAGAAGACTTGCTATCACTGCGACAAACGCACC
TGTTCATTCGTGCGCAATGGCGCTGTTGTATGCAGCTCAGATGTTGATGC
CTGCATCCGTTGTTTCGCCCATTTTTGCTCAACTTGATGAGAACAATGAA
CTGAAAATGATTGATGACGTGGGCCTGGTTCAGAATTTCAATATGGAAAC
GGACGATCCGGACATTTCTACGGCCGAGCGAAGCGCTTCATGGGAATTAT
GCAGTCTTGCAAACTCGTTCCATCCAGCGATTCAGGATCTTGCAAAACAA
TGTGCTGCCGGAAATTGTGGGTCCAGACTTGCGAGAAGTACGACGAGCGT
TGTGTATAAGGCTAAATTGTTCTCAAACGCACAGGGAGGATTTAATCCAC
TGCCACAAGCTGAAAAGCAAGGCAGTTCAAAGCGCAATCGCATAGAAACG
GAACCGCCCGCGGTATACAAACCGTTGTATTCTGAACAAGAGGAACGACA
TATAGATGAGGTTTTCCGAAAAGATGACACAGACATGCAGAACTTTTTCT
TGGCCCAATGGCACAACAGAGAACTCGACTAG

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:46766..48997-

>Gcaud2199.t1 ID=Gcaud2199.t1|Name=Gcaud2199.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2232bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:46766..48997- (Gracilaria caudata M_176_S67 male)
ATGACTAGCAGAAGGCGCAAGAAGAACACAAAGGAACAAAAGGCACCCTC
ATGGGAAGTGTCGAGGACCTTTGCTATTAATGAACGCCAGCCTGTTCCAC
TTCCCGTTGTTCAGGCAGATGGTATCGTAAAGAAGGCACAACAGTCTCGT
CCAAAATTCATAGCCAAAGCGAAGGCCGGGAAAGGGAAGAATGCACTTCT
TAGACAGGCTTTGAAAGATGCCGAAGAAGTTGGGAAGCCTGAAGCGAACG
AGAGCACAGAAAGAGGCGCGAAGCGAGCGCGCATGCGTACTCGTCACGCT
CTCGAGAAATATGAGCAGCAAATCGAAAAAATGGAATCGATCAAAGTCAA
CATCGCGTCTATTGCATCAAGAATCACTTCTAATCCAGAAGAACATGTTT
CGATGTTGCGAGAACTTCGTTCCATGGGACGTGAATCCAAGGGCAAAATA
GCTGCTCTAGTTTTACTTACAGAGTCGCAGGTGTACAAGGATATCGCTCC
GGGCTATAGAATACGTCGGGTAACTGAGAAAGAAGCGGAAACAAAAGTGT
CTAAAGAGACGAAACGATTGCGAGACTTTGAAGAGACTCTTCTTTCAAGC
TATCAGCGGTTCATAAAATCATGCATCAGTCTTTCCAACTGGAGATTTTC
GGGTATCAGACAGACCCTTGCGAGTCGAAATATGACCAAAGTTCGCAACG
CAGCGTGTAAGGCACTATCAGAACTCCTTCGCTCCTTGCCACATTTCAAC
GAAGCAGAAGTTATCGCGACGACTGTCTGTGCTCACGTATGCAATCAGGA
GGCTGATATCCGAAGATTGTGTTCTGAAGCACTTTCTTCAGTTCTTCATA
ACGCCCATCGAGCATCTGGACACTCTCTTGATCTATGTGTTGCGATTGCA
AAGAATCTTGCAAAGGTCGCTGGGAAGAAGAAGCGATCAGCACCGGCAGA
GCTTGTCGCCCCGCTCACAGAAATTCAGTTCGCTAACTTTGCACGGCTTC
CAACGTCAAACAAATCAAAGAAAGAACCAAAGGGGTCAAAGCGATTGAGC
AAAATTAAACGAAAGCGCCAGATGAAACAAGAAAAACATGCGGTAGATGA
GAAGGAAGTCGAAAAGGATATGCGTGAAGCAGATGCGGAAGCGACTCCAC
AGGAACTTTTCGGTGCTAAGAAGAGCTTGTTGAACTCTGTATGCCATGCG
TACTTCAACATAATCCGCTCGGCTTCGAATGATGTGGACGCCGTGGAAGA
AGCCGAAAGTAACAAACCCAGGGCTAAGAAGAGGAAACCACCAGCCGCAC
TTTCACCAGCGTTAAGAGGACTGTTAAGGATATCTACGTTTATCAGCGCG
GACATCATTGATGCGGTTCTAGGAGCGTTAACACCCCTGCTAGAGAGCAA
ACAGCTACCGCTAAGCACTCGGTTTCGTTGTCTTTCAGCCGCATATGCAG
TTTTGGGTGTGAATGCTCGATCTCAGAAAGTAAGTGCCGATTCTTTTACT
GGAGACACGAGAGCGCTTGACACTGCTCTTTATACTGCCATAGGAGCGCT
ATACACGTCAGAAATGCCCTTGCGAGAGGACGAGTCAATCACATATGACG
CTATTGAAGCTGTGGTGGCATCAACAAGTTTTCGTGACATGCCTGCAGCA
AGAAGTGCTGCGCTTGCCAGAAGACTTGCTATCACTGCGACAAACGCACC
TGTTCATTCGTGCGCAATGGCGCTGTTGTATGCAGCTCAGATGTTGATGC
CTGCATCCGTTGTTTCGCCCATTTTTGCTCAACTTGATGAGAACAATGAA
CTGAAAATGATTGATGACGTGGGCCTGGTTCAGAATTTCAATATGGAAAC
GGACGATCCGGACATTTCTACGGCCGAGCGAAGCGCTTCATGGGAATTAT
GCAGTCTTGCAAACTCGTTCCATCCAGCGATTCAGGATCTTGCAAAACAA
TGTGCTGCCGGAAATTGTGGGTCCAGACTTGCGAGAAGTACGACGAGCGT
TGTGTATAAGGCTAAATTGTTCTCAAACGCACAGGGAGGATTTAATCCAC
TGCCACAAGCTGAAAAGCAAGGCAGTTCAAAGCGCAATCGCATAGAAACG
GAACCGCCCGCGGTATACAAACCGTTGTATTCTGAACAAGAGGAACGACA
TATAGATGAGGTTTTCCGAAAAGATGACACAGACATGCAGAACTTTTTCT
TGGCCCAATGGCACAACAGAGAACTCGACTAG