Gcaud2196.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2196.t1
Unique Name	Gcaud2196.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:39858..41717 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2196	Gcaud2196	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 39858..41717 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2196.t1.stop1	Gcaud2196.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 39858..39860 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2196.t1.CDS1	Gcaud2196.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 39858..41717 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2196.t1.exon1	Gcaud2196.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 39858..41717 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2196.t1.start1	Gcaud2196.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 41715..41717 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2196.t1	Gcaud2196.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 39858..41717 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:39858..41717-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:39858..41717-

mRNA sequence

>Gcaud2196.t1 ID=Gcaud2196.t1|Name=Gcaud2196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=620bp
MDDDDLSQLFTREVRCGVGTMRRPLYFYVGLNKLGRIPVERLINRYGGRT
VSRPQAAETQIVYLIDPLSKPDADGPLVYSVHFVQDCVDAGRLLGLGRYR
IPIRNRRSSNCTPTTPTSPNKVRKSTTITPASTPQKSRKKPSEEEEEAEE
AEEAEEQEHPQRRRTLSRRTPLQPAIDATERKDQEEEKAEEPKHVQRRRT
LPIRSPQRRAIDATEQPDQDEEEGEEPKHVQRRRTLPRRTTLQRAFDATE
RKDQEEEEAEEPKHVQLRRTLPRRTALQRAIDATERKDQEEEEGEEPKHG
QRRGTLLRRSPQRRAIDATERTDQEEEEAEEPKHVQRRRTLPRRTTLQRA
FDATERKDQEEEEAEEPKHVRRRRTLPRRTALQRAIDATERKDQESEILL
EETSPSAPTEPWTSEEDNKLRAICQTIQEQLCAEKRNPARLFHLNTWKTL
QSKNALPCHRTAAQCRQRAVVVHHRTKPQTAAQSRQRAIAVHNRTQPQHQ
ADKAVEMERNKQDKVRKRTQETDDEVHEDEDEIQPVYSERRPAKVQRVST
HDRHAQSNQKPSRTKQFIRSIVRSLSYETQMTQRRVFQVLRANSGDRSRT
KAMLLRERRESERSKRNRR*

spliced messenger RNA

>Gcaud2196.t1 ID=Gcaud2196.t1|Name=Gcaud2196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:39858..41717- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATGACGATCTTTCCCAGCTCTTTACCAGAGAGGTCCGTTGCGG
AGTGGGCACAATGCGTCGCCCGCTCTACTTCTACGTCGGGCTCAACAAGC
TCGGGCGCATTCCTGTCGAGCGCCTGATTAATCGCTATGGCGGACGAACA
GTCTCTCGTCCACAAGCTGCGGAGACACAAATAGTATACCTCATTGATCC
ATTGTCCAAGCCTGACGCTGATGGCCCACTTGTTTACTCCGTACATTTCG
TGCAAGATTGTGTTGATGCTGGACGCTTGCTTGGCCTAGGTCGCTATCGC
ATTCCCATCCGTAATCGACGCTCGTCCAATTGCACGCCTACCACACCCAC
TTCCCCGAACAAAGTCAGAAAGAGTACAACCATTACTCCGGCCTCCACGC
CCCAGAAGAGTCGGAAAAAACCATCTGAAGAGGAAGAAGAAGCAGAAGAA
GCAGAAGAAGCAGAAGAACAAGAACACCCTCAACGTCGAAGAACGCTTTC
AAGACGCACTCCCCTGCAGCCAGCTATCGACGCAACGGAGCGGAAAGATC
AAGAGGAAGAGAAAGCAGAAGAACCGAAACATGTTCAACGTCGAAGAACG
CTTCCCATACGCAGTCCCCAGCGGCGAGCTATCGACGCGACAGAGCAGCC
AGATCAAGACGAAGAGGAAGGAGAAGAACCAAAACACGTTCAACGTCGAA
GAACACTTCCTAGACGCACTACACTGCAGCGAGCTTTCGACGCGACAGAG
CGGAAAGATCAAGAGGAAGAGGAAGCAGAAGAACCAAAACACGTTCAACT
TCGAAGAACGCTTCCTAGACGCACTGCACTGCAGCGAGCTATCGACGCGA
CAGAGCGGAAAGATCAAGAGGAAGAGGAAGGAGAAGAACCAAAACACGGT
CAACGTCGAGGAACGCTTCTCAGACGCAGTCCCCAGCGGCGAGCTATCGA
CGCGACAGAGCGGACAGATCAAGAGGAAGAGGAAGCAGAAGAACCAAAAC
ACGTTCAACGTCGAAGAACACTTCCTAGACGCACTACACTGCAGCGAGCT
TTCGACGCGACAGAGCGGAAAGATCAAGAGGAAGAGGAAGCAGAAGAACC
AAAACACGTTCGACGTCGAAGAACACTTCCTAGGCGCACTGCACTGCAGC
GAGCTATCGACGCGACAGAGCGGAAAGATCAAGAGTCTGAAATTCTTCTG
GAGGAGACCTCTCCTTCGGCGCCCACGGAACCGTGGACGTCCGAAGAGGA
CAACAAGCTGCGTGCAATCTGCCAAACTATTCAGGAGCAACTTTGCGCCG
AGAAAAGAAATCCCGCCCGCTTGTTTCACCTCAATACATGGAAAACTTTG
CAAAGCAAAAATGCGTTACCATGCCATCGAACTGCCGCGCAATGTAGACA
ACGGGCCGTCGTCGTACACCATCGCACGAAACCACAAACTGCCGCACAAT
CTAGACAACGAGCCATCGCCGTACACAATCGCACGCAACCACAACATCAA
GCAGATAAGGCAGTGGAAATGGAACGCAACAAGCAAGACAAAGTCCGAAA
ACGAACTCAAGAAACTGATGACGAAGTGCACGAAGATGAAGATGAAATAC
AACCAGTGTACTCGGAACGGCGGCCTGCAAAGGTGCAACGCGTAAGCACA
CATGATCGACACGCGCAAAGCAATCAAAAACCATCGCGGACAAAACAGTT
TATTCGAAGCATCGTTCGTTCACTTTCCTATGAGACGCAAATGACCCAGC
GACGGGTATTTCAGGTGCTGAGGGCGAATTCCGGCGATCGAAGCAGGACT
AAAGCTATGTTACTCAGAGAACGCCGTGAAAGCGAACGTTCAAAAAGAAA
CCGCAGATAA

protein sequence of Gcaud2196.t1

>Gcaud2196.t1 ID=Gcaud2196.t1|Name=Gcaud2196.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=620bp
MDDDDLSQLFTREVRCGVGTMRRPLYFYVGLNKLGRIPVERLINRYGGRT
VSRPQAAETQIVYLIDPLSKPDADGPLVYSVHFVQDCVDAGRLLGLGRYR
IPIRNRRSSNCTPTTPTSPNKVRKSTTITPASTPQKSRKKPSEEEEEAEE
AEEAEEQEHPQRRRTLSRRTPLQPAIDATERKDQEEEKAEEPKHVQRRRT
LPIRSPQRRAIDATEQPDQDEEEGEEPKHVQRRRTLPRRTTLQRAFDATE
RKDQEEEEAEEPKHVQLRRTLPRRTALQRAIDATERKDQEEEEGEEPKHG
QRRGTLLRRSPQRRAIDATERTDQEEEEAEEPKHVQRRRTLPRRTTLQRA
FDATERKDQEEEEAEEPKHVRRRRTLPRRTALQRAIDATERKDQESEILL
EETSPSAPTEPWTSEEDNKLRAICQTIQEQLCAEKRNPARLFHLNTWKTL
QSKNALPCHRTAAQCRQRAVVVHHRTKPQTAAQSRQRAIAVHNRTQPQHQ
ADKAVEMERNKQDKVRKRTQETDDEVHEDEDEIQPVYSERRPAKVQRVST
HDRHAQSNQKPSRTKQFIRSIVRSLSYETQMTQRRVFQVLRANSGDRSRT
KAMLLRERRESERSKRNRR*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:39858..41717-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2196.t1 ID=Gcaud2196.t1|Name=Gcaud2196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:39858..41717- (Gracilaria caudata M_176_S67 male)
ATGGACGATGACGATCTTTCCCAGCTCTTTACCAGAGAGGTCCGTTGCGG
AGTGGGCACAATGCGTCGCCCGCTCTACTTCTACGTCGGGCTCAACAAGC
TCGGGCGCATTCCTGTCGAGCGCCTGATTAATCGCTATGGCGGACGAACA
GTCTCTCGTCCACAAGCTGCGGAGACACAAATAGTATACCTCATTGATCC
ATTGTCCAAGCCTGACGCTGATGGCCCACTTGTTTACTCCGTACATTTCG
TGCAAGATTGTGTTGATGCTGGACGCTTGCTTGGCCTAGGTCGCTATCGC
ATTCCCATCCGTAATCGACGCTCGTCCAATTGCACGCCTACCACACCCAC
TTCCCCGAACAAAGTCAGAAAGAGTACAACCATTACTCCGGCCTCCACGC
CCCAGAAGAGTCGGAAAAAACCATCTGAAGAGGAAGAAGAAGCAGAAGAA
GCAGAAGAAGCAGAAGAACAAGAACACCCTCAACGTCGAAGAACGCTTTC
AAGACGCACTCCCCTGCAGCCAGCTATCGACGCAACGGAGCGGAAAGATC
AAGAGGAAGAGAAAGCAGAAGAACCGAAACATGTTCAACGTCGAAGAACG
CTTCCCATACGCAGTCCCCAGCGGCGAGCTATCGACGCGACAGAGCAGCC
AGATCAAGACGAAGAGGAAGGAGAAGAACCAAAACACGTTCAACGTCGAA
GAACACTTCCTAGACGCACTACACTGCAGCGAGCTTTCGACGCGACAGAG
CGGAAAGATCAAGAGGAAGAGGAAGCAGAAGAACCAAAACACGTTCAACT
TCGAAGAACGCTTCCTAGACGCACTGCACTGCAGCGAGCTATCGACGCGA
CAGAGCGGAAAGATCAAGAGGAAGAGGAAGGAGAAGAACCAAAACACGGT
CAACGTCGAGGAACGCTTCTCAGACGCAGTCCCCAGCGGCGAGCTATCGA
CGCGACAGAGCGGACAGATCAAGAGGAAGAGGAAGCAGAAGAACCAAAAC
ACGTTCAACGTCGAAGAACACTTCCTAGACGCACTACACTGCAGCGAGCT
TTCGACGCGACAGAGCGGAAAGATCAAGAGGAAGAGGAAGCAGAAGAACC
AAAACACGTTCGACGTCGAAGAACACTTCCTAGGCGCACTGCACTGCAGC
GAGCTATCGACGCGACAGAGCGGAAAGATCAAGAGTCTGAAATTCTTCTG
GAGGAGACCTCTCCTTCGGCGCCCACGGAACCGTGGACGTCCGAAGAGGA
CAACAAGCTGCGTGCAATCTGCCAAACTATTCAGGAGCAACTTTGCGCCG
AGAAAAGAAATCCCGCCCGCTTGTTTCACCTCAATACATGGAAAACTTTG
CAAAGCAAAAATGCGTTACCATGCCATCGAACTGCCGCGCAATGTAGACA
ACGGGCCGTCGTCGTACACCATCGCACGAAACCACAAACTGCCGCACAAT
CTAGACAACGAGCCATCGCCGTACACAATCGCACGCAACCACAACATCAA
GCAGATAAGGCAGTGGAAATGGAACGCAACAAGCAAGACAAAGTCCGAAA
ACGAACTCAAGAAACTGATGACGAAGTGCACGAAGATGAAGATGAAATAC
AACCAGTGTACTCGGAACGGCGGCCTGCAAAGGTGCAACGCGTAAGCACA
CATGATCGACACGCGCAAAGCAATCAAAAACCATCGCGGACAAAACAGTT
TATTCGAAGCATCGTTCGTTCACTTTCCTATGAGACGCAAATGACCCAGC
GACGGGTATTTCAGGTGCTGAGGGCGAATTCCGGCGATCGAAGCAGGACT
AAAGCTATGTTACTCAGAGAACGCCGTGAAAGCGAACGTTCAAAAAGAAA
CCGCAGATAA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:39858..41717-

>Gcaud2196.t1 ID=Gcaud2196.t1|Name=Gcaud2196.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1860bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:39858..41717- (Gracilaria caudata M_176_S67 male)
ATGGACGATGACGATCTTTCCCAGCTCTTTACCAGAGAGGTCCGTTGCGG
AGTGGGCACAATGCGTCGCCCGCTCTACTTCTACGTCGGGCTCAACAAGC
TCGGGCGCATTCCTGTCGAGCGCCTGATTAATCGCTATGGCGGACGAACA
GTCTCTCGTCCACAAGCTGCGGAGACACAAATAGTATACCTCATTGATCC
ATTGTCCAAGCCTGACGCTGATGGCCCACTTGTTTACTCCGTACATTTCG
TGCAAGATTGTGTTGATGCTGGACGCTTGCTTGGCCTAGGTCGCTATCGC
ATTCCCATCCGTAATCGACGCTCGTCCAATTGCACGCCTACCACACCCAC
TTCCCCGAACAAAGTCAGAAAGAGTACAACCATTACTCCGGCCTCCACGC
CCCAGAAGAGTCGGAAAAAACCATCTGAAGAGGAAGAAGAAGCAGAAGAA
GCAGAAGAAGCAGAAGAACAAGAACACCCTCAACGTCGAAGAACGCTTTC
AAGACGCACTCCCCTGCAGCCAGCTATCGACGCAACGGAGCGGAAAGATC
AAGAGGAAGAGAAAGCAGAAGAACCGAAACATGTTCAACGTCGAAGAACG
CTTCCCATACGCAGTCCCCAGCGGCGAGCTATCGACGCGACAGAGCAGCC
AGATCAAGACGAAGAGGAAGGAGAAGAACCAAAACACGTTCAACGTCGAA
GAACACTTCCTAGACGCACTACACTGCAGCGAGCTTTCGACGCGACAGAG
CGGAAAGATCAAGAGGAAGAGGAAGCAGAAGAACCAAAACACGTTCAACT
TCGAAGAACGCTTCCTAGACGCACTGCACTGCAGCGAGCTATCGACGCGA
CAGAGCGGAAAGATCAAGAGGAAGAGGAAGGAGAAGAACCAAAACACGGT
CAACGTCGAGGAACGCTTCTCAGACGCAGTCCCCAGCGGCGAGCTATCGA
CGCGACAGAGCGGACAGATCAAGAGGAAGAGGAAGCAGAAGAACCAAAAC
ACGTTCAACGTCGAAGAACACTTCCTAGACGCACTACACTGCAGCGAGCT
TTCGACGCGACAGAGCGGAAAGATCAAGAGGAAGAGGAAGCAGAAGAACC
AAAACACGTTCGACGTCGAAGAACACTTCCTAGGCGCACTGCACTGCAGC
GAGCTATCGACGCGACAGAGCGGAAAGATCAAGAGTCTGAAATTCTTCTG
GAGGAGACCTCTCCTTCGGCGCCCACGGAACCGTGGACGTCCGAAGAGGA
CAACAAGCTGCGTGCAATCTGCCAAACTATTCAGGAGCAACTTTGCGCCG
AGAAAAGAAATCCCGCCCGCTTGTTTCACCTCAATACATGGAAAACTTTG
CAAAGCAAAAATGCGTTACCATGCCATCGAACTGCCGCGCAATGTAGACA
ACGGGCCGTCGTCGTACACCATCGCACGAAACCACAAACTGCCGCACAAT
CTAGACAACGAGCCATCGCCGTACACAATCGCACGCAACCACAACATCAA
GCAGATAAGGCAGTGGAAATGGAACGCAACAAGCAAGACAAAGTCCGAAA
ACGAACTCAAGAAACTGATGACGAAGTGCACGAAGATGAAGATGAAATAC
AACCAGTGTACTCGGAACGGCGGCCTGCAAAGGTGCAACGCGTAAGCACA
CATGATCGACACGCGCAAAGCAATCAAAAACCATCGCGGACAAAACAGTT
TATTCGAAGCATCGTTCGTTCACTTTCCTATGAGACGCAAATGACCCAGC
GACGGGTATTTCAGGTGCTGAGGGCGAATTCCGGCGATCGAAGCAGGACT
AAAGCTATGTTACTCAGAGAACGCCGTGAAAGCGAACGTTCAAAAAGAAA
CCGCAGATAA