Gcaud2193.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2193.t1
Unique NameGcaud2193.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:36439..37053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1244869.H261_21441
Preferred namehisI
PFAMsPRA-CH
Max annot lvl204441|Rhodospirillales
KEGG rclassRC01055
KEGG koko:K01496
KEGG ReactionR04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Evalue3.46e-54
EggNOG OGsCOG0139@1|root,COG0139@2|Bacteria,1MW67@1224|Proteobacteria,2UCKH@28211|Alphaproteobacteria,2JSR5@204441|Rhodospirillales
EC3.5.4.19
DescriptionCatalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2193Gcaud2193Gracilaria caudata M_176_S67 malegeneNODE_19_length_78712_cov_4.326007 36439..37053 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2193.t1.stop1Gcaud2193.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_19_length_78712_cov_4.326007 36439..36441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2193.t1.CDS1Gcaud2193.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 36439..37053 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2193.t1.exon1Gcaud2193.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 36439..37053 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2193.t1.start1Gcaud2193.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_19_length_78712_cov_4.326007 37051..37053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2193.t1Gcaud2193.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_19_length_78712_cov_4.326007 36439..37053 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2193.t1 ID=Gcaud2193.t1|Name=Gcaud2193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=205bp
MKRLAWVVPCARKEPFLLVGGTSFLPNALCLRAPTYKQLLSRKTAVIRST
LHQHSEKALPTEPWKGERIDAQILISNVKFNEAGLVPAIAQQWDSGEILM
MAWMNADSIAETLRGGRAVYYSRSRQQLWRKGDTSGQIQEVRDVVLDCDG
DTILLKVDQFGVACHTGRRSCFYKAFRPPHGEEEVIADVLMDPNELYKNE
KQKL*
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spliced messenger RNA

>Gcaud2193.t1 ID=Gcaud2193.t1|Name=Gcaud2193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=615bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:36439..37053- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGGTTAGCGTGGGTCGTTCCTTGTGCGAGGAAGGAGCCCTTCCT
TCTGGTCGGAGGCACCAGCTTTTTGCCAAACGCCTTATGTTTGCGAGCAC
CCACATACAAACAACTACTTTCCCGAAAGACTGCAGTAATCCGATCAACG
CTTCATCAGCACTCGGAAAAAGCACTTCCGACGGAACCATGGAAGGGTGA
GCGGATTGACGCCCAGATTCTCATCAGCAACGTGAAGTTTAATGAGGCGG
GATTGGTGCCAGCGATTGCGCAGCAATGGGACTCTGGTGAGATTCTGATG
ATGGCGTGGATGAATGCGGATTCTATTGCAGAGACTCTACGAGGAGGAAG
GGCTGTGTACTACTCACGATCTAGACAACAACTGTGGAGAAAGGGTGATA
CTTCTGGCCAGATTCAAGAGGTGCGAGATGTTGTGCTCGACTGTGACGGT
GATACCATTTTACTAAAGGTGGATCAGTTCGGTGTGGCTTGCCATACAGG
CAGACGATCGTGTTTCTATAAAGCATTCAGACCACCGCACGGTGAAGAAG
AGGTCATAGCCGATGTGTTGATGGATCCAAACGAGTTATACAAGAACGAG
AAACAGAAATTATGA
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protein sequence of Gcaud2193.t1

>Gcaud2193.t1 ID=Gcaud2193.t1|Name=Gcaud2193.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=205bp
MKRLAWVVPCARKEPFLLVGGTSFLPNALCLRAPTYKQLLSRKTAVIRST
LHQHSEKALPTEPWKGERIDAQILISNVKFNEAGLVPAIAQQWDSGEILM
MAWMNADSIAETLRGGRAVYYSRSRQQLWRKGDTSGQIQEVRDVVLDCDG
DTILLKVDQFGVACHTGRRSCFYKAFRPPHGEEEVIADVLMDPNELYKNE
KQKL*
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mRNA from alignment at NODE_19_length_78712_cov_4.326007:36439..37053-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2193.t1 ID=Gcaud2193.t1|Name=Gcaud2193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=615bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:36439..37053- (Gracilaria caudata M_176_S67 male)
ATGAAACGGTTAGCGTGGGTCGTTCCTTGTGCGAGGAAGGAGCCCTTCCT
TCTGGTCGGAGGCACCAGCTTTTTGCCAAACGCCTTATGTTTGCGAGCAC
CCACATACAAACAACTACTTTCCCGAAAGACTGCAGTAATCCGATCAACG
CTTCATCAGCACTCGGAAAAAGCACTTCCGACGGAACCATGGAAGGGTGA
GCGGATTGACGCCCAGATTCTCATCAGCAACGTGAAGTTTAATGAGGCGG
GATTGGTGCCAGCGATTGCGCAGCAATGGGACTCTGGTGAGATTCTGATG
ATGGCGTGGATGAATGCGGATTCTATTGCAGAGACTCTACGAGGAGGAAG
GGCTGTGTACTACTCACGATCTAGACAACAACTGTGGAGAAAGGGTGATA
CTTCTGGCCAGATTCAAGAGGTGCGAGATGTTGTGCTCGACTGTGACGGT
GATACCATTTTACTAAAGGTGGATCAGTTCGGTGTGGCTTGCCATACAGG
CAGACGATCGTGTTTCTATAAAGCATTCAGACCACCGCACGGTGAAGAAG
AGGTCATAGCCGATGTGTTGATGGATCCAAACGAGTTATACAAGAACGAG
AAACAGAAATTATGA
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Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:36439..37053-

>Gcaud2193.t1 ID=Gcaud2193.t1|Name=Gcaud2193.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=615bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:36439..37053- (Gracilaria caudata M_176_S67 male)
ATGAAACGGTTAGCGTGGGTCGTTCCTTGTGCGAGGAAGGAGCCCTTCCT
TCTGGTCGGAGGCACCAGCTTTTTGCCAAACGCCTTATGTTTGCGAGCAC
CCACATACAAACAACTACTTTCCCGAAAGACTGCAGTAATCCGATCAACG
CTTCATCAGCACTCGGAAAAAGCACTTCCGACGGAACCATGGAAGGGTGA
GCGGATTGACGCCCAGATTCTCATCAGCAACGTGAAGTTTAATGAGGCGG
GATTGGTGCCAGCGATTGCGCAGCAATGGGACTCTGGTGAGATTCTGATG
ATGGCGTGGATGAATGCGGATTCTATTGCAGAGACTCTACGAGGAGGAAG
GGCTGTGTACTACTCACGATCTAGACAACAACTGTGGAGAAAGGGTGATA
CTTCTGGCCAGATTCAAGAGGTGCGAGATGTTGTGCTCGACTGTGACGGT
GATACCATTTTACTAAAGGTGGATCAGTTCGGTGTGGCTTGCCATACAGG
CAGACGATCGTGTTTCTATAAAGCATTCAGACCACCGCACGGTGAAGAAG
AGGTCATAGCCGATGTGTTGATGGATCCAAACGAGTTATACAAGAACGAG
AAACAGAAATTATGA
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