Gcaud2191.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2191.t1
Unique Name	Gcaud2191.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:31344..32669 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704102.1
Preferred name	UBA3
PFAMs	E2_bind,ThiF
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10686,ko:K12462
KEGG Pathway	ko04120,ko04722,ko04962,map04120,map04722,map04962
GOs	GO:0000278,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0007049,GO:0007113,GO:0008134,GO:0008150,GO:0008152,GO:0008589,GO:0008641,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016740,GO:0016874,GO:0016877,GO:0016922,GO:0019219,GO:0019222,GO:0019538,GO:0019781,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032991,GO:0035257,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043516,GO:0043518,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045116,GO:0045879,GO:0045892,GO:0045934,GO:0046982,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051427,GO:0051726,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0140096,GO:1901564,GO:1901796,GO:1901797,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001020,GO:2001021,GO:2001141
Evalue	6.66e-163
EggNOG OGs	COG0476@1\|root,KOG2015@2759\|Eukaryota
EC	6.2.1.45
Description	NEDD8 activating enzyme activity
COG category	H
BRITE	ko00000,ko00001,ko01000,ko04121,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2191	Gcaud2191	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 31344..32669 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2191.t1.start1	Gcaud2191.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 31344..31346 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2191.t1.CDS1	Gcaud2191.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 31344..32669 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2191.t1.exon1	Gcaud2191.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 31344..32669 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2191.t1.stop1	Gcaud2191.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 32667..32669 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2191.t1	Gcaud2191.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 31344..32669 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:31344..32669+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:31344..32669+

mRNA sequence

>Gcaud2191.t1 ID=Gcaud2191.t1|Name=Gcaud2191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=442bp
MQTENVSSDAPGWKSGGPSWGGLDHLLRNAGPLSTDLNVEGADSTETFLR
QHCKVLIIGAGGLGCELLKDVALSGFRHIHVIDLDTIDVTNLNRQFLFQS
TDVGKSKAEVAARFINSRVPGCSVVAHHANIMDFESGFYQQFNMVIAGLD
SVEARRWLNAMLVSLVQFESDGSINRSSVIPLIDGGTEGFQGQARIIFPR
FTSCFECTLNLFPPQQNFPFCTIANTPRLPEHCIEYAHVILWDKLKPFGN
VKLDMDNVEHTKWMYETAKARAEQFGIEGVTLRLTQGVAKNIIPAVASTN
AIVAAACANEAFKMISCIAKNMDNYMMYNGTIGVYTYTYKNEKRPDCPVC
GVPQPKTLNVAGTDSLAEFLDQIAADPDIRSKKPFLRSNTGKTLYASTSP
LREATQLNLEKRLNELITSGAEVTLADRDLPFIRTLVINYK*

spliced messenger RNA

>Gcaud2191.t1 ID=Gcaud2191.t1|Name=Gcaud2191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:31344..32669+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACTGAAAATGTTTCTAGTGATGCGCCAGGCTGGAAGTCCGGCGG
TCCTTCATGGGGTGGTTTGGACCATCTTCTGCGCAACGCAGGACCGCTTT
CCACTGACCTCAACGTCGAAGGCGCAGATTCCACAGAAACTTTTCTGCGC
CAACATTGCAAGGTGCTTATCATCGGCGCTGGTGGTCTAGGCTGTGAACT
TTTAAAGGACGTAGCTCTTTCAGGCTTTCGTCACATCCATGTAATAGATC
TCGACACCATCGACGTTACAAACCTCAACAGACAGTTTTTGTTCCAGTCG
ACAGATGTAGGAAAGTCAAAGGCCGAGGTGGCCGCGCGGTTTATCAATTC
ACGGGTTCCGGGATGCAGCGTTGTAGCTCATCATGCTAACATCATGGATT
TTGAGAGTGGCTTCTATCAGCAATTCAATATGGTAATTGCAGGACTTGAT
TCCGTCGAAGCGCGTCGTTGGTTGAATGCTATGCTAGTCAGTTTGGTTCA
GTTTGAATCCGACGGATCAATCAATCGATCTTCCGTGATACCGTTGATTG
ACGGTGGTACTGAAGGCTTTCAAGGACAGGCAAGAATTATATTTCCGCGC
TTCACGTCCTGCTTCGAATGTACGCTCAACTTATTTCCGCCGCAACAAAA
CTTTCCGTTCTGCACAATTGCCAACACACCGAGGCTACCCGAGCATTGTA
TTGAGTACGCACACGTCATTTTATGGGACAAACTGAAGCCATTTGGAAAT
GTAAAGCTGGATATGGACAATGTAGAACACACCAAGTGGATGTACGAAAC
AGCAAAAGCCAGAGCAGAGCAATTTGGAATAGAAGGTGTTACGTTACGAT
TAACACAAGGTGTTGCTAAGAATATCATCCCGGCAGTCGCCTCAACAAAT
GCAATTGTAGCCGCTGCCTGCGCTAACGAGGCGTTTAAGATGATATCCTG
TATTGCTAAAAACATGGACAACTACATGATGTATAACGGAACAATTGGGG
TATACACATATACGTACAAGAATGAAAAGAGGCCTGATTGTCCGGTGTGC
GGAGTTCCACAACCAAAGACTTTGAACGTCGCAGGCACGGATTCTCTCGC
CGAGTTCCTGGACCAAATAGCTGCAGATCCTGACATTCGCTCGAAAAAGC
CATTCCTTCGTTCAAACACCGGGAAGACCCTATACGCTTCCACCTCTCCA
CTCCGGGAGGCAACGCAACTGAATCTAGAGAAAAGGCTCAACGAGTTAAT
CACCTCGGGCGCGGAGGTAACATTAGCGGACAGAGATTTGCCCTTCATTC
GAACTCTTGTCATTAACTACAAATAG

protein sequence of Gcaud2191.t1

>Gcaud2191.t1 ID=Gcaud2191.t1|Name=Gcaud2191.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=442bp
MQTENVSSDAPGWKSGGPSWGGLDHLLRNAGPLSTDLNVEGADSTETFLR
QHCKVLIIGAGGLGCELLKDVALSGFRHIHVIDLDTIDVTNLNRQFLFQS
TDVGKSKAEVAARFINSRVPGCSVVAHHANIMDFESGFYQQFNMVIAGLD
SVEARRWLNAMLVSLVQFESDGSINRSSVIPLIDGGTEGFQGQARIIFPR
FTSCFECTLNLFPPQQNFPFCTIANTPRLPEHCIEYAHVILWDKLKPFGN
VKLDMDNVEHTKWMYETAKARAEQFGIEGVTLRLTQGVAKNIIPAVASTN
AIVAAACANEAFKMISCIAKNMDNYMMYNGTIGVYTYTYKNEKRPDCPVC
GVPQPKTLNVAGTDSLAEFLDQIAADPDIRSKKPFLRSNTGKTLYASTSP
LREATQLNLEKRLNELITSGAEVTLADRDLPFIRTLVINYK*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:31344..32669+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2191.t1 ID=Gcaud2191.t1|Name=Gcaud2191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:31344..32669+ (Gracilaria caudata M_176_S67 male)
ATGCAGACTGAAAATGTTTCTAGTGATGCGCCAGGCTGGAAGTCCGGCGG
TCCTTCATGGGGTGGTTTGGACCATCTTCTGCGCAACGCAGGACCGCTTT
CCACTGACCTCAACGTCGAAGGCGCAGATTCCACAGAAACTTTTCTGCGC
CAACATTGCAAGGTGCTTATCATCGGCGCTGGTGGTCTAGGCTGTGAACT
TTTAAAGGACGTAGCTCTTTCAGGCTTTCGTCACATCCATGTAATAGATC
TCGACACCATCGACGTTACAAACCTCAACAGACAGTTTTTGTTCCAGTCG
ACAGATGTAGGAAAGTCAAAGGCCGAGGTGGCCGCGCGGTTTATCAATTC
ACGGGTTCCGGGATGCAGCGTTGTAGCTCATCATGCTAACATCATGGATT
TTGAGAGTGGCTTCTATCAGCAATTCAATATGGTAATTGCAGGACTTGAT
TCCGTCGAAGCGCGTCGTTGGTTGAATGCTATGCTAGTCAGTTTGGTTCA
GTTTGAATCCGACGGATCAATCAATCGATCTTCCGTGATACCGTTGATTG
ACGGTGGTACTGAAGGCTTTCAAGGACAGGCAAGAATTATATTTCCGCGC
TTCACGTCCTGCTTCGAATGTACGCTCAACTTATTTCCGCCGCAACAAAA
CTTTCCGTTCTGCACAATTGCCAACACACCGAGGCTACCCGAGCATTGTA
TTGAGTACGCACACGTCATTTTATGGGACAAACTGAAGCCATTTGGAAAT
GTAAAGCTGGATATGGACAATGTAGAACACACCAAGTGGATGTACGAAAC
AGCAAAAGCCAGAGCAGAGCAATTTGGAATAGAAGGTGTTACGTTACGAT
TAACACAAGGTGTTGCTAAGAATATCATCCCGGCAGTCGCCTCAACAAAT
GCAATTGTAGCCGCTGCCTGCGCTAACGAGGCGTTTAAGATGATATCCTG
TATTGCTAAAAACATGGACAACTACATGATGTATAACGGAACAATTGGGG
TATACACATATACGTACAAGAATGAAAAGAGGCCTGATTGTCCGGTGTGC
GGAGTTCCACAACCAAAGACTTTGAACGTCGCAGGCACGGATTCTCTCGC
CGAGTTCCTGGACCAAATAGCTGCAGATCCTGACATTCGCTCGAAAAAGC
CATTCCTTCGTTCAAACACCGGGAAGACCCTATACGCTTCCACCTCTCCA
CTCCGGGAGGCAACGCAACTGAATCTAGAGAAAAGGCTCAACGAGTTAAT
CACCTCGGGCGCGGAGGTAACATTAGCGGACAGAGATTTGCCCTTCATTC
GAACTCTTGTCATTAACTACAAATAG

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:31344..32669+

>Gcaud2191.t1 ID=Gcaud2191.t1|Name=Gcaud2191.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1326bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:31344..32669+ (Gracilaria caudata M_176_S67 male)
ATGCAGACTGAAAATGTTTCTAGTGATGCGCCAGGCTGGAAGTCCGGCGG
TCCTTCATGGGGTGGTTTGGACCATCTTCTGCGCAACGCAGGACCGCTTT
CCACTGACCTCAACGTCGAAGGCGCAGATTCCACAGAAACTTTTCTGCGC
CAACATTGCAAGGTGCTTATCATCGGCGCTGGTGGTCTAGGCTGTGAACT
TTTAAAGGACGTAGCTCTTTCAGGCTTTCGTCACATCCATGTAATAGATC
TCGACACCATCGACGTTACAAACCTCAACAGACAGTTTTTGTTCCAGTCG
ACAGATGTAGGAAAGTCAAAGGCCGAGGTGGCCGCGCGGTTTATCAATTC
ACGGGTTCCGGGATGCAGCGTTGTAGCTCATCATGCTAACATCATGGATT
TTGAGAGTGGCTTCTATCAGCAATTCAATATGGTAATTGCAGGACTTGAT
TCCGTCGAAGCGCGTCGTTGGTTGAATGCTATGCTAGTCAGTTTGGTTCA
GTTTGAATCCGACGGATCAATCAATCGATCTTCCGTGATACCGTTGATTG
ACGGTGGTACTGAAGGCTTTCAAGGACAGGCAAGAATTATATTTCCGCGC
TTCACGTCCTGCTTCGAATGTACGCTCAACTTATTTCCGCCGCAACAAAA
CTTTCCGTTCTGCACAATTGCCAACACACCGAGGCTACCCGAGCATTGTA
TTGAGTACGCACACGTCATTTTATGGGACAAACTGAAGCCATTTGGAAAT
GTAAAGCTGGATATGGACAATGTAGAACACACCAAGTGGATGTACGAAAC
AGCAAAAGCCAGAGCAGAGCAATTTGGAATAGAAGGTGTTACGTTACGAT
TAACACAAGGTGTTGCTAAGAATATCATCCCGGCAGTCGCCTCAACAAAT
GCAATTGTAGCCGCTGCCTGCGCTAACGAGGCGTTTAAGATGATATCCTG
TATTGCTAAAAACATGGACAACTACATGATGTATAACGGAACAATTGGGG
TATACACATATACGTACAAGAATGAAAAGAGGCCTGATTGTCCGGTGTGC
GGAGTTCCACAACCAAAGACTTTGAACGTCGCAGGCACGGATTCTCTCGC
CGAGTTCCTGGACCAAATAGCTGCAGATCCTGACATTCGCTCGAAAAAGC
CATTCCTTCGTTCAAACACCGGGAAGACCCTATACGCTTCCACCTCTCCA
CTCCGGGAGGCAACGCAACTGAATCTAGAGAAAAGGCTCAACGAGTTAAT
CACCTCGGGCGCGGAGGTAACATTAGCGGACAGAGATTTGCCCTTCATTC
GAACTCTTGTCATTAACTACAAATAG