Gcaud2189.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2189.t1
Unique NameGcaud2189.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:28259..28819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC001755-PA
Preferred nameUBE2N
PFAMsUQ_con
Max annot lvl33208|Metazoa
KEGG koko:K10580
KEGG Pathwayko04120,ko04624,map04120,map04624
GOsGO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0000902,GO:0000904,GO:0001650,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007412,GO:0007416,GO:0007528,GO:0007610,GO:0007625,GO:0007626,GO:0007629,GO:0007630,GO:0008150,GO:0008152,GO:0008344,GO:0008594,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009794,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0016043,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0021700,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030522,GO:0030534,GO:0031056,GO:0031058,GO:0031098,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031624,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032872,GO:0032874,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033554,GO:0033674,GO:0034097,GO:0034641,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0040007,GO:0040019,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042493,GO:0042742,GO:0043085,GO:0043122,GO:0043123,GO:0043130,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0045739,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045935,GO:0045937,GO:0045977,GO:0045995,GO:0046328,GO:0046330,GO:0046483,GO:0046530,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050808,GO:0050851,GO:0050852,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051124,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051438,GO:0051443,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060074,GO:0060255,GO:0061057,GO:0061564,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070302,GO:0070304,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0072347,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0120036,GO:0120039,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902494,GO:1902531,GO:1902533,GO:1902914,GO:1902916,GO:1903320,GO:1903322,GO:1903506,GO:1905269,GO:1990234,GO:2000026,GO:2000112,GO:2001020,GO:2001022,GO:2001141,GO:2001252
Evalue6.8e-82
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota,39ZUE@33154|Opisthokonta,3BPC6@33208|Metazoa,3D0I0@33213|Bilateria,41TRR@6656|Arthropoda,3SKJH@50557|Insecta
EC2.3.2.23
DescriptionBelongs to the ubiquitin-conjugating enzyme family
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2189Gcaud2189Gracilaria caudata M_176_S67 malegeneNODE_19_length_78712_cov_4.326007 28259..28819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2189.t1Gcaud2189.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_19_length_78712_cov_4.326007 28259..28819 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2189.t1.start1Gcaud2189.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_19_length_78712_cov_4.326007 28259..28261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2189.t1.CDS1Gcaud2189.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 28259..28288 +
Gcaud2189.t1.CDS2Gcaud2189.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 28397..28819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2189.t1.exon1Gcaud2189.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 28259..28288 +
Gcaud2189.t1.exon2Gcaud2189.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 28397..28819 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2189.t1.intron1Gcaud2189.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_19_length_78712_cov_4.326007 28289..28396 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2189.t1.stop1Gcaud2189.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_19_length_78712_cov_4.326007 28817..28819 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2189.t1 ID=Gcaud2189.t1|Name=Gcaud2189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=151bp
MASLPKRIMKETERLQSEPVPGISAVPSDSNARLFSVVIIGPEESPYAAG
RFKLELFLPEDYPMAPPKVRFLTRIYHPNIDRLGRICLDILKDKWSPALQ
IRTVLLSIQALLSAPNPDDPLNNDAAELWKTNEVLAMQTARDWTKQHAME
*
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spliced messenger RNA

>Gcaud2189.t1 ID=Gcaud2189.t1|Name=Gcaud2189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:28259..28819+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCCTACCGAAGCGCATCATGAAGGAGACGGAAAGGCTCCAGAG
CGAGCCGGTACCGGGCATAAGCGCCGTCCCCAGCGACTCTAATGCTCGTC
TCTTTTCCGTCGTCATAATCGGTCCGGAGGAGTCTCCGTACGCCGCAGGC
CGCTTCAAGCTCGAGCTCTTCCTTCCCGAAGACTATCCTATGGCCCCGCC
CAAAGTTCGCTTTCTCACCCGTATCTACCACCCAAACATCGATCGTCTCG
GACGAATCTGTCTCGACATTCTCAAGGACAAATGGAGCCCAGCCCTGCAG
ATTAGAACCGTGCTGCTTTCTATTCAAGCACTTCTTTCCGCCCCAAATCC
TGATGACCCTCTCAACAACGACGCCGCAGAGTTGTGGAAGACCAACGAAG
TGCTTGCCATGCAGACTGCACGTGACTGGACTAAGCAACATGCGATGGAA
TAA
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protein sequence of Gcaud2189.t1

>Gcaud2189.t1 ID=Gcaud2189.t1|Name=Gcaud2189.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=151bp
MASLPKRIMKETERLQSEPVPGISAVPSDSNARLFSVVIIGPEESPYAAG
RFKLELFLPEDYPMAPPKVRFLTRIYHPNIDRLGRICLDILKDKWSPALQ
IRTVLLSIQALLSAPNPDDPLNNDAAELWKTNEVLAMQTARDWTKQHAME
*
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mRNA from alignment at NODE_19_length_78712_cov_4.326007:28259..28819+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2189.t1 ID=Gcaud2189.t1|Name=Gcaud2189.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:28259..28819+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCCCTACCGAAGCGCATCATGAAGGTATCTTGTTCGTGCTTGCT
CAAATGCATCCTTTCCGTACCTTCTTGTAGCTAACCGCCATGCGTCCCAT
TTCTATTCTCGCCTTGGATGTGCCCTTGTATCAAATAGGAGACGGAAAGG
CTCCAGAGCGAGCCGGTACCGGGCATAAGCGCCGTCCCCAGCGACTCTAA
TGCTCGTCTCTTTTCCGTCGTCATAATCGGTCCGGAGGAGTCTCCGTACG
CCGCAGGCCGCTTCAAGCTCGAGCTCTTCCTTCCCGAAGACTATCCTATG
GCCCCGCCCAAAGTTCGCTTTCTCACCCGTATCTACCACCCAAACATCGA
TCGTCTCGGACGAATCTGTCTCGACATTCTCAAGGACAAATGGAGCCCAG
CCCTGCAGATTAGAACCGTGCTGCTTTCTATTCAAGCACTTCTTTCCGCC
CCAAATCCTGATGACCCTCTCAACAACGACGCCGCAGAGTTGTGGAAGAC
CAACGAAGTGCTTGCCATGCAGACTGCACGTGACTGGACTAAGCAACATG
CGATGGAATAA
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Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:28259..28819+

>Gcaud2189.t1 ID=Gcaud2189.t1|Name=Gcaud2189.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=453bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:28259..28819+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCCCTACCGAAGCGCATCATGAAGGAGACGGAAAGGCTCCAGAG
CGAGCCGGTACCGGGCATAAGCGCCGTCCCCAGCGACTCTAATGCTCGTC
TCTTTTCCGTCGTCATAATCGGTCCGGAGGAGTCTCCGTACGCCGCAGGC
CGCTTCAAGCTCGAGCTCTTCCTTCCCGAAGACTATCCTATGGCCCCGCC
CAAAGTTCGCTTTCTCACCCGTATCTACCACCCAAACATCGATCGTCTCG
GACGAATCTGTCTCGACATTCTCAAGGACAAATGGAGCCCAGCCCTGCAG
ATTAGAACCGTGCTGCTTTCTATTCAAGCACTTCTTTCCGCCCCAAATCC
TGATGACCCTCTCAACAACGACGCCGCAGAGTTGTGGAAGACCAACGAAG
TGCTTGCCATGCAGACTGCACGTGACTGGACTAAGCAACATGCGATGGAA
TAA
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