Gcaud2186.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2186.t1
Unique Name	Gcaud2186.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	714

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:13328..15564 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44056.XP_009034106.1
PFAMs	PH,PI3_PI4_kinase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K21289
KEGG Reaction	R04545
KEGG Pathway	ko00562,ko04022,ko04072,ko04151,ko04261,ko04371,ko04611,ko04725,ko04921,ko05145,ko05167,map00562,map04022,map04072,map04151,map04261,map04371,map04611,map04725,map04921,map05145,map05167
Evalue	2.84e-23
EggNOG OGs	COG5032@1\|root,KOG0904@2759\|Eukaryota
EC	2.7.1.153
Description	1-phosphatidylinositol-4-phosphate 3-kinase activity
COG category	BDLTU
BRITE	ko00000,ko00001,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2186	Gcaud2186	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 13328..15564 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2186.t1	Gcaud2186.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 13328..15564 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2186.t1.stop1	Gcaud2186.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 13328..13330 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2186.t1.CDS1	Gcaud2186.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 13328..13892 -
Gcaud2186.t1.CDS2	Gcaud2186.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 13988..15564 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2186.t1.exon1	Gcaud2186.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 13328..13892 -
Gcaud2186.t1.exon2	Gcaud2186.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 13988..15564 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2186.t1.intron1	Gcaud2186.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_19_length_78712_cov_4.326007 13893..13987 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2186.t1.start1	Gcaud2186.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 15562..15564 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:13328..15564-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:13328..15564-

mRNA sequence

>Gcaud2186.t1 ID=Gcaud2186.t1|Name=Gcaud2186.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp
MSTSSAPLELNQTHLLNLILAPDLEESLSHEALLAVNNETIFHLLPLILA
AVHRIGESPSHRQNYVKLVAVLRMRVAACRGLKLRFLILARSPAFCHQWK
VKLVHRRHCYFAAKHALDNYLNENQGQESSGALSRAASASFRHGVSKQLS
DYLNDKKVVINFAAQSLLHPEHGIHTRTLQWSLIPVRDAFYASELVDGIM
ERANFTSREEAVQVAQKMQDYGLIVEFGGLSSKFKDSKKRLYRSNLKLHR
DDAGHCRVKTKTGDMLSSWQEIENQPIPIKQIEVQLSMDQMDFQTFEFWT
RTVFVKEVDKGYRFPAVAISHPMYYEGLDALTNLELSKLTLCEDPTTDQS
SQDIAPTPTDLGDEAASSFTDFSDFNQTNALVGSVIVQKVFQSLTRPMIV
QLRVPSEDSDWERDDHHMTLPPSLLVKNGDNLMRDLAVEMIFNVFNHIWA
SSRLINSRYAKPPYSHCYEIFPTATGTGFMEAMTGLVSLKDFDWRKWRQS
FASDSERVEDLLRSAAGSYIGTYVTGGRDRHFDNIVVKDDTHVVHIDFGF
TMGISPPIDCPPIAIAPDMESTFREMKIWGRFLNICVDAFLALRAEAPAV
IRTSVMIFSKAGYEEEEIRSFMQGKLSLNVHENDTKAATSLRKQLVSSSG
DLKAKFKAFAHDNVNPAWYALLEKGFPPAKALMKLVEVSQQKAAEKTQEK
DAPNVGENERIHL*

spliced messenger RNA

>Gcaud2186.t1 ID=Gcaud2186.t1|Name=Gcaud2186.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2142bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:13328..15564- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACGTCATCCGCTCCGTTGGAGCTCAATCAAACCCATCTCCTCAA
CCTTATTCTTGCTCCGGACTTGGAGGAGAGTCTTTCGCACGAAGCGCTCT
TGGCCGTGAACAATGAAACCATATTCCATCTACTTCCTCTCATCCTGGCT
GCTGTGCATCGCATAGGTGAATCGCCATCTCATCGTCAGAACTATGTGAA
GCTTGTCGCCGTTTTACGCATGCGCGTCGCCGCTTGCAGGGGTCTCAAAC
TACGCTTCCTGATTCTTGCTCGTAGTCCTGCATTCTGCCATCAGTGGAAA
GTCAAACTCGTTCACCGTCGCCATTGTTATTTTGCTGCAAAACACGCACT
TGACAATTACTTGAACGAAAATCAAGGTCAGGAAAGCTCCGGTGCTCTTT
CGCGAGCTGCATCTGCTTCATTTCGTCATGGCGTCAGCAAACAACTCTCA
GATTATCTCAATGACAAGAAGGTAGTCATCAACTTTGCAGCTCAAAGTTT
GCTCCACCCAGAACACGGTATTCATACTCGTACTCTCCAGTGGTCCCTGA
TTCCCGTCCGTGATGCTTTCTACGCGTCCGAGTTGGTGGATGGTATTATG
GAGCGCGCCAACTTCACATCGCGAGAAGAGGCCGTTCAGGTAGCTCAAAA
GATGCAAGACTACGGGCTCATCGTCGAGTTCGGTGGTCTCTCCTCCAAGT
TCAAAGATTCTAAAAAGAGATTGTATCGAAGCAACCTCAAACTGCATCGC
GATGATGCTGGACATTGCCGTGTTAAGACCAAAACTGGTGATATGCTCTC
ATCCTGGCAAGAGATTGAAAACCAACCCATACCCATCAAACAGATTGAGG
TTCAACTGTCAATGGACCAGATGGACTTCCAAACCTTCGAATTTTGGACT
CGAACTGTCTTCGTGAAAGAGGTTGATAAAGGATATCGGTTCCCAGCCGT
TGCCATCTCGCATCCTATGTATTATGAAGGCCTTGATGCGCTAACTAATC
TTGAGTTGTCGAAGCTAACTCTCTGTGAGGATCCGACAACAGATCAATCA
TCACAAGATATTGCTCCGACACCGACAGATCTCGGAGATGAAGCGGCATC
TTCTTTCACAGATTTTTCGGACTTTAACCAAACCAATGCCTTGGTTGGTT
CTGTTATCGTTCAAAAGGTCTTCCAAAGCCTTACTCGCCCCATGATAGTG
CAGCTTCGTGTCCCCTCAGAGGACTCAGACTGGGAACGCGATGATCATCA
CATGACGCTACCTCCAAGCCTGTTGGTAAAGAACGGGGACAATCTGATGC
GCGACTTAGCTGTGGAGATGATATTTAACGTATTCAATCATATTTGGGCG
TCGTCACGTCTTATCAACTCTAGGTACGCGAAGCCACCATACAGTCATTG
CTATGAAATATTCCCGACTGCGACGGGAACAGGATTTATGGAGGCTATGA
CCGGCTTAGTTTCTCTAAAGGATTTTGACTGGAGGAAGTGGCGACAGAGT
TTTGCATCGGATTCCGAGAGGGTCGAAGACCTTTTGCGGTCGGCCGCTGG
ATCGTACATCGGGACTTATGTGACCGGAGGGAGGGATCGACACTTCGATA
ACATTGTTGTGAAAGATGATACGCATGTTGTACATATTGATTTCGGATTC
ACCATGGGTATCAGTCCGCCAATTGACTGCCCTCCAATTGCTATTGCGCC
GGATATGGAGTCCACATTTCGGGAAATGAAAATCTGGGGGCGGTTTTTGA
ATATATGTGTTGACGCTTTCCTCGCTTTGCGAGCGGAAGCGCCCGCAGTT
ATCCGCACCTCTGTGATGATCTTCAGCAAAGCTGGATATGAAGAAGAAGA
AATCCGAAGTTTTATGCAAGGAAAGTTAAGTTTGAATGTGCATGAGAATG
ATACGAAGGCGGCGACCTCTCTAAGAAAACAGCTTGTTTCAAGCTCTGGG
GACCTCAAGGCGAAATTCAAAGCGTTCGCGCACGACAACGTTAATCCGGC
GTGGTATGCGTTGCTTGAGAAAGGATTTCCTCCGGCTAAGGCTCTTATGA
AACTCGTGGAGGTTTCTCAGCAAAAAGCTGCTGAGAAGACGCAGGAGAAG
GATGCCCCGAACGTGGGTGAAAATGAACGAATTCACCTTTGA

protein sequence of Gcaud2186.t1

>Gcaud2186.t1 ID=Gcaud2186.t1|Name=Gcaud2186.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=714bp
MSTSSAPLELNQTHLLNLILAPDLEESLSHEALLAVNNETIFHLLPLILA
AVHRIGESPSHRQNYVKLVAVLRMRVAACRGLKLRFLILARSPAFCHQWK
VKLVHRRHCYFAAKHALDNYLNENQGQESSGALSRAASASFRHGVSKQLS
DYLNDKKVVINFAAQSLLHPEHGIHTRTLQWSLIPVRDAFYASELVDGIM
ERANFTSREEAVQVAQKMQDYGLIVEFGGLSSKFKDSKKRLYRSNLKLHR
DDAGHCRVKTKTGDMLSSWQEIENQPIPIKQIEVQLSMDQMDFQTFEFWT
RTVFVKEVDKGYRFPAVAISHPMYYEGLDALTNLELSKLTLCEDPTTDQS
SQDIAPTPTDLGDEAASSFTDFSDFNQTNALVGSVIVQKVFQSLTRPMIV
QLRVPSEDSDWERDDHHMTLPPSLLVKNGDNLMRDLAVEMIFNVFNHIWA
SSRLINSRYAKPPYSHCYEIFPTATGTGFMEAMTGLVSLKDFDWRKWRQS
FASDSERVEDLLRSAAGSYIGTYVTGGRDRHFDNIVVKDDTHVVHIDFGF
TMGISPPIDCPPIAIAPDMESTFREMKIWGRFLNICVDAFLALRAEAPAV
IRTSVMIFSKAGYEEEEIRSFMQGKLSLNVHENDTKAATSLRKQLVSSSG
DLKAKFKAFAHDNVNPAWYALLEKGFPPAKALMKLVEVSQQKAAEKTQEK
DAPNVGENERIHL*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:13328..15564-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2186.t1 ID=Gcaud2186.t1|Name=Gcaud2186.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2237bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:13328..15564- (Gracilaria caudata M_176_S67 male)
ATGTCCACGTCATCCGCTCCGTTGGAGCTCAATCAAACCCATCTCCTCAA
CCTTATTCTTGCTCCGGACTTGGAGGAGAGTCTTTCGCACGAAGCGCTCT
TGGCCGTGAACAATGAAACCATATTCCATCTACTTCCTCTCATCCTGGCT
GCTGTGCATCGCATAGGTGAATCGCCATCTCATCGTCAGAACTATGTGAA
GCTTGTCGCCGTTTTACGCATGCGCGTCGCCGCTTGCAGGGGTCTCAAAC
TACGCTTCCTGATTCTTGCTCGTAGTCCTGCATTCTGCCATCAGTGGAAA
GTCAAACTCGTTCACCGTCGCCATTGTTATTTTGCTGCAAAACACGCACT
TGACAATTACTTGAACGAAAATCAAGGTCAGGAAAGCTCCGGTGCTCTTT
CGCGAGCTGCATCTGCTTCATTTCGTCATGGCGTCAGCAAACAACTCTCA
GATTATCTCAATGACAAGAAGGTAGTCATCAACTTTGCAGCTCAAAGTTT
GCTCCACCCAGAACACGGTATTCATACTCGTACTCTCCAGTGGTCCCTGA
TTCCCGTCCGTGATGCTTTCTACGCGTCCGAGTTGGTGGATGGTATTATG
GAGCGCGCCAACTTCACATCGCGAGAAGAGGCCGTTCAGGTAGCTCAAAA
GATGCAAGACTACGGGCTCATCGTCGAGTTCGGTGGTCTCTCCTCCAAGT
TCAAAGATTCTAAAAAGAGATTGTATCGAAGCAACCTCAAACTGCATCGC
GATGATGCTGGACATTGCCGTGTTAAGACCAAAACTGGTGATATGCTCTC
ATCCTGGCAAGAGATTGAAAACCAACCCATACCCATCAAACAGATTGAGG
TTCAACTGTCAATGGACCAGATGGACTTCCAAACCTTCGAATTTTGGACT
CGAACTGTCTTCGTGAAAGAGGTTGATAAAGGATATCGGTTCCCAGCCGT
TGCCATCTCGCATCCTATGTATTATGAAGGCCTTGATGCGCTAACTAATC
TTGAGTTGTCGAAGCTAACTCTCTGTGAGGATCCGACAACAGATCAATCA
TCACAAGATATTGCTCCGACACCGACAGATCTCGGAGATGAAGCGGCATC
TTCTTTCACAGATTTTTCGGACTTTAACCAAACCAATGCCTTGGTTGGTT
CTGTTATCGTTCAAAAGGTCTTCCAAAGCCTTACTCGCCCCATGATAGTG
CAGCTTCGTGTCCCCTCAGAGGACTCAGACTGGGAACGCGATGATCATCA
CATGACGCTACCTCCAAGCCTGTTGGTAAAGAACGGGGACAATCTGATGC
GCGACTTAGCTGTGGAGATGATATTTAACGTATTCAATCATATTTGGGCG
TCGTCACGTCTTATCAACTCTAGGTACGCGAAGCCACCATACAGTCATTG
CTATGAAATATTCCCGACTGCGACGGGAACAGGATTTATGGAGGCTATGA
CCGGCTTAGTTTCTCTAAAGGATTTTGACTGGAGGAAGTGGCGACAGAGT
TTTGCATCGGATTCCGAGAGGGTCGAAGACCTTTTGCGGTCGGCCGCTGG
ATCGTACATCGGGACTTATGTGACCGGGTGAGTGACAATTGTTTTTTTTG
TTCCGACTGGAAAGTAAGAGAGCTGACCATCGATTTCACGTTTACGGAAT
GCCATGCGCTTTGTGGTTGCAGAGGGAGGGATCGACACTTCGATAACATT
GTTGTGAAAGATGATACGCATGTTGTACATATTGATTTCGGATTCACCAT
GGGTATCAGTCCGCCAATTGACTGCCCTCCAATTGCTATTGCGCCGGATA
TGGAGTCCACATTTCGGGAAATGAAAATCTGGGGGCGGTTTTTGAATATA
TGTGTTGACGCTTTCCTCGCTTTGCGAGCGGAAGCGCCCGCAGTTATCCG
CACCTCTGTGATGATCTTCAGCAAAGCTGGATATGAAGAAGAAGAAATCC
GAAGTTTTATGCAAGGAAAGTTAAGTTTGAATGTGCATGAGAATGATACG
AAGGCGGCGACCTCTCTAAGAAAACAGCTTGTTTCAAGCTCTGGGGACCT
CAAGGCGAAATTCAAAGCGTTCGCGCACGACAACGTTAATCCGGCGTGGT
ATGCGTTGCTTGAGAAAGGATTTCCTCCGGCTAAGGCTCTTATGAAACTC
GTGGAGGTTTCTCAGCAAAAAGCTGCTGAGAAGACGCAGGAGAAGGATGC
CCCGAACGTGGGTGAAAATGAACGAATTCACCTTTGA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:13328..15564-

>Gcaud2186.t1 ID=Gcaud2186.t1|Name=Gcaud2186.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2142bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:13328..15564- (Gracilaria caudata M_176_S67 male)
ATGTCCACGTCATCCGCTCCGTTGGAGCTCAATCAAACCCATCTCCTCAA
CCTTATTCTTGCTCCGGACTTGGAGGAGAGTCTTTCGCACGAAGCGCTCT
TGGCCGTGAACAATGAAACCATATTCCATCTACTTCCTCTCATCCTGGCT
GCTGTGCATCGCATAGGTGAATCGCCATCTCATCGTCAGAACTATGTGAA
GCTTGTCGCCGTTTTACGCATGCGCGTCGCCGCTTGCAGGGGTCTCAAAC
TACGCTTCCTGATTCTTGCTCGTAGTCCTGCATTCTGCCATCAGTGGAAA
GTCAAACTCGTTCACCGTCGCCATTGTTATTTTGCTGCAAAACACGCACT
TGACAATTACTTGAACGAAAATCAAGGTCAGGAAAGCTCCGGTGCTCTTT
CGCGAGCTGCATCTGCTTCATTTCGTCATGGCGTCAGCAAACAACTCTCA
GATTATCTCAATGACAAGAAGGTAGTCATCAACTTTGCAGCTCAAAGTTT
GCTCCACCCAGAACACGGTATTCATACTCGTACTCTCCAGTGGTCCCTGA
TTCCCGTCCGTGATGCTTTCTACGCGTCCGAGTTGGTGGATGGTATTATG
GAGCGCGCCAACTTCACATCGCGAGAAGAGGCCGTTCAGGTAGCTCAAAA
GATGCAAGACTACGGGCTCATCGTCGAGTTCGGTGGTCTCTCCTCCAAGT
TCAAAGATTCTAAAAAGAGATTGTATCGAAGCAACCTCAAACTGCATCGC
GATGATGCTGGACATTGCCGTGTTAAGACCAAAACTGGTGATATGCTCTC
ATCCTGGCAAGAGATTGAAAACCAACCCATACCCATCAAACAGATTGAGG
TTCAACTGTCAATGGACCAGATGGACTTCCAAACCTTCGAATTTTGGACT
CGAACTGTCTTCGTGAAAGAGGTTGATAAAGGATATCGGTTCCCAGCCGT
TGCCATCTCGCATCCTATGTATTATGAAGGCCTTGATGCGCTAACTAATC
TTGAGTTGTCGAAGCTAACTCTCTGTGAGGATCCGACAACAGATCAATCA
TCACAAGATATTGCTCCGACACCGACAGATCTCGGAGATGAAGCGGCATC
TTCTTTCACAGATTTTTCGGACTTTAACCAAACCAATGCCTTGGTTGGTT
CTGTTATCGTTCAAAAGGTCTTCCAAAGCCTTACTCGCCCCATGATAGTG
CAGCTTCGTGTCCCCTCAGAGGACTCAGACTGGGAACGCGATGATCATCA
CATGACGCTACCTCCAAGCCTGTTGGTAAAGAACGGGGACAATCTGATGC
GCGACTTAGCTGTGGAGATGATATTTAACGTATTCAATCATATTTGGGCG
TCGTCACGTCTTATCAACTCTAGGTACGCGAAGCCACCATACAGTCATTG
CTATGAAATATTCCCGACTGCGACGGGAACAGGATTTATGGAGGCTATGA
CCGGCTTAGTTTCTCTAAAGGATTTTGACTGGAGGAAGTGGCGACAGAGT
TTTGCATCGGATTCCGAGAGGGTCGAAGACCTTTTGCGGTCGGCCGCTGG
ATCGTACATCGGGACTTATGTGACCGGAGGGAGGGATCGACACTTCGATA
ACATTGTTGTGAAAGATGATACGCATGTTGTACATATTGATTTCGGATTC
ACCATGGGTATCAGTCCGCCAATTGACTGCCCTCCAATTGCTATTGCGCC
GGATATGGAGTCCACATTTCGGGAAATGAAAATCTGGGGGCGGTTTTTGA
ATATATGTGTTGACGCTTTCCTCGCTTTGCGAGCGGAAGCGCCCGCAGTT
ATCCGCACCTCTGTGATGATCTTCAGCAAAGCTGGATATGAAGAAGAAGA
AATCCGAAGTTTTATGCAAGGAAAGTTAAGTTTGAATGTGCATGAGAATG
ATACGAAGGCGGCGACCTCTCTAAGAAAACAGCTTGTTTCAAGCTCTGGG
GACCTCAAGGCGAAATTCAAAGCGTTCGCGCACGACAACGTTAATCCGGC
GTGGTATGCGTTGCTTGAGAAAGGATTTCCTCCGGCTAAGGCTCTTATGA
AACTCGTGGAGGTTTCTCAGCAAAAAGCTGCTGAGAAGACGCAGGAGAAG
GATGCCCCGAACGTGGGTGAAAATGAACGAATTCACCTTTGA