Gcaud2182.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2182.t1
Unique Name	Gcaud2182.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:5950..7107 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP05539
PFAMs	WD40
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K14818
Evalue	4.56e-19
EggNOG OGs	KOG0296@1\|root,KOG0296@2759\|Eukaryota,37QFP@33090\|Viridiplantae,34HGF@3041\|Chlorophyta
Description	WD domain, G-beta repeat
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2182	Gcaud2182	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 5950..7107 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2182.t1.stop1	Gcaud2182.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 5950..5952 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2182.t1.CDS1	Gcaud2182.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 5950..7107 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2182.t1.exon1	Gcaud2182.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 5950..7107 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2182.t1.start1	Gcaud2182.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 7105..7107 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2182.t1	Gcaud2182.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 5950..7107 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:5950..7107-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:5950..7107-

mRNA sequence

>Gcaud2182.t1 ID=Gcaud2182.t1|Name=Gcaud2182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=386bp
MSSDEQSPPQMAASSLRAFPAAVSDVRTGHAGFVFSCSRAADRLCLHDTN
SGERVVSLDVPAQRPSRIAVASDGVKCAFATVTGTVYIWDMLYPTSMESF
RPDEEQSSPVTDLAWHPRGHVLAVATECGHLYLWDHVVGALLYPLPAHVG
AISAVRWTAHGRLLVSVGASDSLLRVWNPRNVNNLADVSAETEHSTPVKW
HARGISCLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMNAHHSA
VSCVRFAPIGSPRPLRSASAAVDGSVHLFDMDRRLPMGKFTHGKNAVVQL
DFSHHADVLFSAAGQTVMAWDARVAPEEEPPITFGAHHHVVNAFALVNSG
ANLVTACDDGMLRTYDMRYPSGDPPSLPVEDKSRT*

spliced messenger RNA

>Gcaud2182.t1 ID=Gcaud2182.t1|Name=Gcaud2182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:5950..7107- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGCGACGAGCAGTCGCCGCCGCAGATGGCCGCGAGTTCGCTGCG
CGCCTTCCCGGCCGCCGTGTCCGACGTGCGCACCGGCCATGCCGGCTTCG
TGTTCTCGTGCTCGCGCGCCGCGGATCGCTTGTGTTTGCACGATACCAAC
TCGGGCGAGCGCGTGGTTTCGTTGGACGTGCCGGCGCAGAGGCCGTCGCG
AATTGCCGTGGCGAGCGATGGCGTCAAGTGCGCGTTTGCCACTGTGACCG
GCACTGTGTACATCTGGGACATGCTGTATCCCACCTCCATGGAGTCGTTC
CGTCCGGATGAGGAGCAGTCGTCGCCTGTGACTGATCTCGCTTGGCACCC
CAGGGGCCACGTTCTGGCTGTGGCCACCGAGTGCGGCCACCTGTATCTGT
GGGATCACGTCGTGGGCGCCTTGCTGTATCCGTTGCCCGCGCACGTCGGC
GCCATCTCCGCGGTGCGATGGACCGCGCACGGCCGACTGCTCGTATCGGT
GGGCGCGTCCGACTCGCTGCTGCGCGTGTGGAACCCGCGAAACGTTAACA
ATCTGGCCGATGTGTCCGCTGAAACAGAGCATTCCACGCCGGTCAAGTGG
CATGCGCGCGGCATTTCGTGTCTGGATACGCTGCAGGACATGTCTCGCGT
GGCTATCACTGGCGCGCCGGACGGCTCTGTGCTCTTGTCCGTGCTCAAAC
CGGAGTCGCAGTGCGGCGTGTTTGCGTCCATGAATGCGCATCATTCTGCT
GTCAGCTGTGTTCGTTTTGCGCCCATCGGATCCCCGCGCCCGTTGCGATC
GGCGAGCGCTGCTGTGGACGGTTCCGTGCATCTGTTTGACATGGATCGCC
GTCTTCCCATGGGAAAGTTCACGCATGGGAAGAATGCTGTGGTGCAGTTG
GACTTCTCACATCATGCTGATGTGCTGTTTTCTGCGGCCGGACAAACGGT
GATGGCGTGGGATGCTCGGGTTGCGCCGGAGGAGGAACCACCCATCACGT
TTGGCGCTCATCATCACGTCGTTAATGCATTTGCTTTAGTTAACTCGGGC
GCGAATCTCGTCACCGCTTGCGATGACGGTATGCTGCGAACGTACGATAT
GCGCTATCCGTCGGGAGATCCGCCTTCTCTTCCCGTCGAAGATAAGTCTC
GCACATAA

protein sequence of Gcaud2182.t1

>Gcaud2182.t1 ID=Gcaud2182.t1|Name=Gcaud2182.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=386bp
MSSDEQSPPQMAASSLRAFPAAVSDVRTGHAGFVFSCSRAADRLCLHDTN
SGERVVSLDVPAQRPSRIAVASDGVKCAFATVTGTVYIWDMLYPTSMESF
RPDEEQSSPVTDLAWHPRGHVLAVATECGHLYLWDHVVGALLYPLPAHVG
AISAVRWTAHGRLLVSVGASDSLLRVWNPRNVNNLADVSAETEHSTPVKW
HARGISCLDTLQDMSRVAITGAPDGSVLLSVLKPESQCGVFASMNAHHSA
VSCVRFAPIGSPRPLRSASAAVDGSVHLFDMDRRLPMGKFTHGKNAVVQL
DFSHHADVLFSAAGQTVMAWDARVAPEEEPPITFGAHHHVVNAFALVNSG
ANLVTACDDGMLRTYDMRYPSGDPPSLPVEDKSRT*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:5950..7107-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2182.t1 ID=Gcaud2182.t1|Name=Gcaud2182.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:5950..7107- (Gracilaria caudata M_176_S67 male)
ATGTCGAGCGACGAGCAGTCGCCGCCGCAGATGGCCGCGAGTTCGCTGCG
CGCCTTCCCGGCCGCCGTGTCCGACGTGCGCACCGGCCATGCCGGCTTCG
TGTTCTCGTGCTCGCGCGCCGCGGATCGCTTGTGTTTGCACGATACCAAC
TCGGGCGAGCGCGTGGTTTCGTTGGACGTGCCGGCGCAGAGGCCGTCGCG
AATTGCCGTGGCGAGCGATGGCGTCAAGTGCGCGTTTGCCACTGTGACCG
GCACTGTGTACATCTGGGACATGCTGTATCCCACCTCCATGGAGTCGTTC
CGTCCGGATGAGGAGCAGTCGTCGCCTGTGACTGATCTCGCTTGGCACCC
CAGGGGCCACGTTCTGGCTGTGGCCACCGAGTGCGGCCACCTGTATCTGT
GGGATCACGTCGTGGGCGCCTTGCTGTATCCGTTGCCCGCGCACGTCGGC
GCCATCTCCGCGGTGCGATGGACCGCGCACGGCCGACTGCTCGTATCGGT
GGGCGCGTCCGACTCGCTGCTGCGCGTGTGGAACCCGCGAAACGTTAACA
ATCTGGCCGATGTGTCCGCTGAAACAGAGCATTCCACGCCGGTCAAGTGG
CATGCGCGCGGCATTTCGTGTCTGGATACGCTGCAGGACATGTCTCGCGT
GGCTATCACTGGCGCGCCGGACGGCTCTGTGCTCTTGTCCGTGCTCAAAC
CGGAGTCGCAGTGCGGCGTGTTTGCGTCCATGAATGCGCATCATTCTGCT
GTCAGCTGTGTTCGTTTTGCGCCCATCGGATCCCCGCGCCCGTTGCGATC
GGCGAGCGCTGCTGTGGACGGTTCCGTGCATCTGTTTGACATGGATCGCC
GTCTTCCCATGGGAAAGTTCACGCATGGGAAGAATGCTGTGGTGCAGTTG
GACTTCTCACATCATGCTGATGTGCTGTTTTCTGCGGCCGGACAAACGGT
GATGGCGTGGGATGCTCGGGTTGCGCCGGAGGAGGAACCACCCATCACGT
TTGGCGCTCATCATCACGTCGTTAATGCATTTGCTTTAGTTAACTCGGGC
GCGAATCTCGTCACCGCTTGCGATGACGGTATGCTGCGAACGTACGATAT
GCGCTATCCGTCGGGAGATCCGCCTTCTCTTCCCGTCGAAGATAAGTCTC
GCACATAA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:5950..7107-

>Gcaud2182.t1 ID=Gcaud2182.t1|Name=Gcaud2182.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1158bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:5950..7107- (Gracilaria caudata M_176_S67 male)
ATGTCGAGCGACGAGCAGTCGCCGCCGCAGATGGCCGCGAGTTCGCTGCG
CGCCTTCCCGGCCGCCGTGTCCGACGTGCGCACCGGCCATGCCGGCTTCG
TGTTCTCGTGCTCGCGCGCCGCGGATCGCTTGTGTTTGCACGATACCAAC
TCGGGCGAGCGCGTGGTTTCGTTGGACGTGCCGGCGCAGAGGCCGTCGCG
AATTGCCGTGGCGAGCGATGGCGTCAAGTGCGCGTTTGCCACTGTGACCG
GCACTGTGTACATCTGGGACATGCTGTATCCCACCTCCATGGAGTCGTTC
CGTCCGGATGAGGAGCAGTCGTCGCCTGTGACTGATCTCGCTTGGCACCC
CAGGGGCCACGTTCTGGCTGTGGCCACCGAGTGCGGCCACCTGTATCTGT
GGGATCACGTCGTGGGCGCCTTGCTGTATCCGTTGCCCGCGCACGTCGGC
GCCATCTCCGCGGTGCGATGGACCGCGCACGGCCGACTGCTCGTATCGGT
GGGCGCGTCCGACTCGCTGCTGCGCGTGTGGAACCCGCGAAACGTTAACA
ATCTGGCCGATGTGTCCGCTGAAACAGAGCATTCCACGCCGGTCAAGTGG
CATGCGCGCGGCATTTCGTGTCTGGATACGCTGCAGGACATGTCTCGCGT
GGCTATCACTGGCGCGCCGGACGGCTCTGTGCTCTTGTCCGTGCTCAAAC
CGGAGTCGCAGTGCGGCGTGTTTGCGTCCATGAATGCGCATCATTCTGCT
GTCAGCTGTGTTCGTTTTGCGCCCATCGGATCCCCGCGCCCGTTGCGATC
GGCGAGCGCTGCTGTGGACGGTTCCGTGCATCTGTTTGACATGGATCGCC
GTCTTCCCATGGGAAAGTTCACGCATGGGAAGAATGCTGTGGTGCAGTTG
GACTTCTCACATCATGCTGATGTGCTGTTTTCTGCGGCCGGACAAACGGT
GATGGCGTGGGATGCTCGGGTTGCGCCGGAGGAGGAACCACCCATCACGT
TTGGCGCTCATCATCACGTCGTTAATGCATTTGCTTTAGTTAACTCGGGC
GCGAATCTCGTCACCGCTTGCGATGACGGTATGCTGCGAACGTACGATAT
GCGCTATCCGTCGGGAGATCCGCCTTCTCTTCCCGTCGAAGATAAGTCTC
GCACATAA