Gcaud2181.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2181.t1
Unique Name	Gcaud2181.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:3654..5525 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2181	Gcaud2181	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 3654..5525 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2181.t1.start1	Gcaud2181.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 3654..3656 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2181.t1.CDS1	Gcaud2181.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 3654..5525 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2181.t1.exon1	Gcaud2181.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 3654..5525 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2181.t1.stop1	Gcaud2181.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 5523..5525 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2181.t1	Gcaud2181.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 3654..5525 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:3654..5525+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:3654..5525+

mRNA sequence

>Gcaud2181.t1 ID=Gcaud2181.t1|Name=Gcaud2181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp
MAENGEINPAVKNARVLRCARELLANRTLYISERYKTSLITASSALQSIR
MIDNLHDKMEKKMAKTEDVSQMQIELAQARVSLMNAVRSYDKDHIREVEC
KTERLTLSYDPVYLETEEDRRNRYHDQKNRENRQKVTWTNNPSSRFVSLM
KGDFEGVEVVTEAEQRSCVSKCAWLFAIIGLVVALGFLVAEFWYAQANPA
VTSTVIRNEKLEMPVIHLCSQFPFLPLFDNLTQEYAGKALFGLRSYTNSE
TGETIAYPQTRELVYEPSLLGNSEYCSQRMQYISKSNILKALHEETEPTR
TCYSCLRVGQKKPIFLNAEQAKYRTLGAVTFESAISYDMEYCFNPSNVIS
GWLRANLRSSIEDHWEGLLREKVITVIDAPSTDYILNNGFDHLKGDTSAL
AAAQAAVYCNIYFFSGFFFPVEPDTEVRYGFDFSRTDPWVRLSNDENFLE
TQTEVFNPFEEQVSNRAMVLDTVRNAKSGNIREQVIGVNLFVLDSGKDRA
PRPHDLVGALRENHRDVLLLTREDDDKQPKHVRKMIAGPLKQFVSLGRFA
RFNVSVDFGTFDTALVSRRPTTSLAEFLTDVFEYVGLFTGICAYTLIVGP
ARMYLRVFKQNKSNLREATSVRP*

spliced messenger RNA

>Gcaud2181.t1 ID=Gcaud2181.t1|Name=Gcaud2181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:3654..5525+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAAACGGCGAAATCAATCCTGCCGTGAAGAATGCTAGAGTTCT
AAGATGCGCTCGAGAACTACTCGCAAATCGTACCTTGTACATTTCGGAGC
GCTATAAGACGTCGCTTATCACGGCCTCAAGTGCGCTTCAATCCATCCGA
ATGATCGACAACCTTCATGACAAGATGGAAAAGAAAATGGCCAAAACAGA
GGACGTCAGCCAAATGCAAATCGAATTGGCTCAAGCTCGAGTCTCTTTGA
TGAACGCAGTTAGATCATATGACAAGGACCACATTCGCGAAGTTGAGTGT
AAGACTGAGCGCCTCACTCTTTCGTACGATCCAGTGTATCTGGAAACGGA
AGAAGATAGAAGGAACCGATACCATGACCAGAAGAACAGGGAAAATAGAC
AGAAAGTCACTTGGACAAACAATCCGTCCTCTCGTTTTGTCAGTCTCATG
AAAGGCGACTTCGAAGGTGTGGAAGTTGTTACCGAAGCTGAACAACGATC
TTGTGTTTCAAAGTGCGCCTGGTTGTTTGCCATAATCGGATTGGTCGTGG
CTCTTGGCTTCCTAGTCGCTGAATTCTGGTACGCTCAGGCTAACCCTGCC
GTAACCAGCACTGTGATCCGCAATGAGAAGCTTGAGATGCCTGTTATTCA
CCTGTGTTCACAGTTCCCCTTCTTGCCGCTGTTTGACAACCTTACGCAAG
AATATGCTGGAAAGGCCTTATTTGGACTTCGAAGTTATACAAACTCGGAA
ACTGGAGAAACGATCGCGTATCCGCAGACAAGAGAGCTTGTGTATGAGCC
AAGTTTGTTGGGAAACTCTGAGTATTGTTCGCAACGTATGCAGTACATCT
CCAAGAGCAACATTCTGAAAGCGCTTCATGAGGAAACCGAACCGACGCGA
ACGTGCTATTCGTGTCTCAGAGTAGGCCAGAAGAAGCCCATATTCCTCAA
CGCAGAGCAAGCAAAGTACAGGACGCTCGGAGCAGTTACATTCGAATCAG
CGATTTCATACGACATGGAGTATTGTTTCAATCCTTCCAACGTGATATCG
GGATGGTTGAGGGCAAACCTGAGATCGAGCATAGAAGATCACTGGGAAGG
GTTGTTGCGTGAGAAGGTGATAACTGTCATCGACGCGCCTAGTACGGACT
ACATCTTAAACAACGGATTTGATCACCTCAAAGGCGACACATCGGCGCTT
GCTGCAGCCCAAGCTGCCGTGTACTGCAACATATACTTTTTCTCAGGTTT
CTTCTTCCCGGTTGAGCCAGACACCGAAGTTCGCTATGGATTCGATTTTT
CTCGCACAGATCCATGGGTGCGACTAAGCAACGACGAGAACTTCCTTGAA
ACGCAGACGGAGGTTTTCAATCCTTTCGAAGAACAAGTTTCAAATCGCGC
CATGGTGTTGGACACGGTGAGAAACGCAAAGAGCGGCAATATCCGTGAAC
AGGTGATAGGCGTGAATCTATTCGTGCTTGACTCTGGAAAAGATCGAGCT
CCAAGACCGCACGACCTTGTCGGCGCATTGAGGGAAAATCACCGCGATGT
TCTGTTGCTGACGCGAGAGGACGATGACAAGCAACCAAAACACGTGAGAA
AGATGATTGCGGGTCCTCTTAAACAGTTTGTGAGTCTGGGTCGTTTCGCG
CGCTTCAATGTGTCGGTGGATTTTGGCACTTTCGACACTGCTTTGGTATC
TCGACGACCGACGACTTCTCTGGCGGAATTCTTGACAGACGTATTTGAGT
ACGTGGGTCTGTTCACCGGCATCTGTGCGTACACGCTGATTGTCGGGCCC
GCAAGAATGTACCTGAGGGTGTTCAAGCAGAACAAAAGCAACTTGCGAGA
GGCAACGAGCGTTCGGCCGTAG

protein sequence of Gcaud2181.t1

>Gcaud2181.t1 ID=Gcaud2181.t1|Name=Gcaud2181.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=624bp
MAENGEINPAVKNARVLRCARELLANRTLYISERYKTSLITASSALQSIR
MIDNLHDKMEKKMAKTEDVSQMQIELAQARVSLMNAVRSYDKDHIREVEC
KTERLTLSYDPVYLETEEDRRNRYHDQKNRENRQKVTWTNNPSSRFVSLM
KGDFEGVEVVTEAEQRSCVSKCAWLFAIIGLVVALGFLVAEFWYAQANPA
VTSTVIRNEKLEMPVIHLCSQFPFLPLFDNLTQEYAGKALFGLRSYTNSE
TGETIAYPQTRELVYEPSLLGNSEYCSQRMQYISKSNILKALHEETEPTR
TCYSCLRVGQKKPIFLNAEQAKYRTLGAVTFESAISYDMEYCFNPSNVIS
GWLRANLRSSIEDHWEGLLREKVITVIDAPSTDYILNNGFDHLKGDTSAL
AAAQAAVYCNIYFFSGFFFPVEPDTEVRYGFDFSRTDPWVRLSNDENFLE
TQTEVFNPFEEQVSNRAMVLDTVRNAKSGNIREQVIGVNLFVLDSGKDRA
PRPHDLVGALRENHRDVLLLTREDDDKQPKHVRKMIAGPLKQFVSLGRFA
RFNVSVDFGTFDTALVSRRPTTSLAEFLTDVFEYVGLFTGICAYTLIVGP
ARMYLRVFKQNKSNLREATSVRP*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:3654..5525+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2181.t1 ID=Gcaud2181.t1|Name=Gcaud2181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:3654..5525+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAAAACGGCGAAATCAATCCTGCCGTGAAGAATGCTAGAGTTCT
AAGATGCGCTCGAGAACTACTCGCAAATCGTACCTTGTACATTTCGGAGC
GCTATAAGACGTCGCTTATCACGGCCTCAAGTGCGCTTCAATCCATCCGA
ATGATCGACAACCTTCATGACAAGATGGAAAAGAAAATGGCCAAAACAGA
GGACGTCAGCCAAATGCAAATCGAATTGGCTCAAGCTCGAGTCTCTTTGA
TGAACGCAGTTAGATCATATGACAAGGACCACATTCGCGAAGTTGAGTGT
AAGACTGAGCGCCTCACTCTTTCGTACGATCCAGTGTATCTGGAAACGGA
AGAAGATAGAAGGAACCGATACCATGACCAGAAGAACAGGGAAAATAGAC
AGAAAGTCACTTGGACAAACAATCCGTCCTCTCGTTTTGTCAGTCTCATG
AAAGGCGACTTCGAAGGTGTGGAAGTTGTTACCGAAGCTGAACAACGATC
TTGTGTTTCAAAGTGCGCCTGGTTGTTTGCCATAATCGGATTGGTCGTGG
CTCTTGGCTTCCTAGTCGCTGAATTCTGGTACGCTCAGGCTAACCCTGCC
GTAACCAGCACTGTGATCCGCAATGAGAAGCTTGAGATGCCTGTTATTCA
CCTGTGTTCACAGTTCCCCTTCTTGCCGCTGTTTGACAACCTTACGCAAG
AATATGCTGGAAAGGCCTTATTTGGACTTCGAAGTTATACAAACTCGGAA
ACTGGAGAAACGATCGCGTATCCGCAGACAAGAGAGCTTGTGTATGAGCC
AAGTTTGTTGGGAAACTCTGAGTATTGTTCGCAACGTATGCAGTACATCT
CCAAGAGCAACATTCTGAAAGCGCTTCATGAGGAAACCGAACCGACGCGA
ACGTGCTATTCGTGTCTCAGAGTAGGCCAGAAGAAGCCCATATTCCTCAA
CGCAGAGCAAGCAAAGTACAGGACGCTCGGAGCAGTTACATTCGAATCAG
CGATTTCATACGACATGGAGTATTGTTTCAATCCTTCCAACGTGATATCG
GGATGGTTGAGGGCAAACCTGAGATCGAGCATAGAAGATCACTGGGAAGG
GTTGTTGCGTGAGAAGGTGATAACTGTCATCGACGCGCCTAGTACGGACT
ACATCTTAAACAACGGATTTGATCACCTCAAAGGCGACACATCGGCGCTT
GCTGCAGCCCAAGCTGCCGTGTACTGCAACATATACTTTTTCTCAGGTTT
CTTCTTCCCGGTTGAGCCAGACACCGAAGTTCGCTATGGATTCGATTTTT
CTCGCACAGATCCATGGGTGCGACTAAGCAACGACGAGAACTTCCTTGAA
ACGCAGACGGAGGTTTTCAATCCTTTCGAAGAACAAGTTTCAAATCGCGC
CATGGTGTTGGACACGGTGAGAAACGCAAAGAGCGGCAATATCCGTGAAC
AGGTGATAGGCGTGAATCTATTCGTGCTTGACTCTGGAAAAGATCGAGCT
CCAAGACCGCACGACCTTGTCGGCGCATTGAGGGAAAATCACCGCGATGT
TCTGTTGCTGACGCGAGAGGACGATGACAAGCAACCAAAACACGTGAGAA
AGATGATTGCGGGTCCTCTTAAACAGTTTGTGAGTCTGGGTCGTTTCGCG
CGCTTCAATGTGTCGGTGGATTTTGGCACTTTCGACACTGCTTTGGTATC
TCGACGACCGACGACTTCTCTGGCGGAATTCTTGACAGACGTATTTGAGT
ACGTGGGTCTGTTCACCGGCATCTGTGCGTACACGCTGATTGTCGGGCCC
GCAAGAATGTACCTGAGGGTGTTCAAGCAGAACAAAAGCAACTTGCGAGA
GGCAACGAGCGTTCGGCCGTAG

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:3654..5525+

>Gcaud2181.t1 ID=Gcaud2181.t1|Name=Gcaud2181.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1872bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:3654..5525+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAAAACGGCGAAATCAATCCTGCCGTGAAGAATGCTAGAGTTCT
AAGATGCGCTCGAGAACTACTCGCAAATCGTACCTTGTACATTTCGGAGC
GCTATAAGACGTCGCTTATCACGGCCTCAAGTGCGCTTCAATCCATCCGA
ATGATCGACAACCTTCATGACAAGATGGAAAAGAAAATGGCCAAAACAGA
GGACGTCAGCCAAATGCAAATCGAATTGGCTCAAGCTCGAGTCTCTTTGA
TGAACGCAGTTAGATCATATGACAAGGACCACATTCGCGAAGTTGAGTGT
AAGACTGAGCGCCTCACTCTTTCGTACGATCCAGTGTATCTGGAAACGGA
AGAAGATAGAAGGAACCGATACCATGACCAGAAGAACAGGGAAAATAGAC
AGAAAGTCACTTGGACAAACAATCCGTCCTCTCGTTTTGTCAGTCTCATG
AAAGGCGACTTCGAAGGTGTGGAAGTTGTTACCGAAGCTGAACAACGATC
TTGTGTTTCAAAGTGCGCCTGGTTGTTTGCCATAATCGGATTGGTCGTGG
CTCTTGGCTTCCTAGTCGCTGAATTCTGGTACGCTCAGGCTAACCCTGCC
GTAACCAGCACTGTGATCCGCAATGAGAAGCTTGAGATGCCTGTTATTCA
CCTGTGTTCACAGTTCCCCTTCTTGCCGCTGTTTGACAACCTTACGCAAG
AATATGCTGGAAAGGCCTTATTTGGACTTCGAAGTTATACAAACTCGGAA
ACTGGAGAAACGATCGCGTATCCGCAGACAAGAGAGCTTGTGTATGAGCC
AAGTTTGTTGGGAAACTCTGAGTATTGTTCGCAACGTATGCAGTACATCT
CCAAGAGCAACATTCTGAAAGCGCTTCATGAGGAAACCGAACCGACGCGA
ACGTGCTATTCGTGTCTCAGAGTAGGCCAGAAGAAGCCCATATTCCTCAA
CGCAGAGCAAGCAAAGTACAGGACGCTCGGAGCAGTTACATTCGAATCAG
CGATTTCATACGACATGGAGTATTGTTTCAATCCTTCCAACGTGATATCG
GGATGGTTGAGGGCAAACCTGAGATCGAGCATAGAAGATCACTGGGAAGG
GTTGTTGCGTGAGAAGGTGATAACTGTCATCGACGCGCCTAGTACGGACT
ACATCTTAAACAACGGATTTGATCACCTCAAAGGCGACACATCGGCGCTT
GCTGCAGCCCAAGCTGCCGTGTACTGCAACATATACTTTTTCTCAGGTTT
CTTCTTCCCGGTTGAGCCAGACACCGAAGTTCGCTATGGATTCGATTTTT
CTCGCACAGATCCATGGGTGCGACTAAGCAACGACGAGAACTTCCTTGAA
ACGCAGACGGAGGTTTTCAATCCTTTCGAAGAACAAGTTTCAAATCGCGC
CATGGTGTTGGACACGGTGAGAAACGCAAAGAGCGGCAATATCCGTGAAC
AGGTGATAGGCGTGAATCTATTCGTGCTTGACTCTGGAAAAGATCGAGCT
CCAAGACCGCACGACCTTGTCGGCGCATTGAGGGAAAATCACCGCGATGT
TCTGTTGCTGACGCGAGAGGACGATGACAAGCAACCAAAACACGTGAGAA
AGATGATTGCGGGTCCTCTTAAACAGTTTGTGAGTCTGGGTCGTTTCGCG
CGCTTCAATGTGTCGGTGGATTTTGGCACTTTCGACACTGCTTTGGTATC
TCGACGACCGACGACTTCTCTGGCGGAATTCTTGACAGACGTATTTGAGT
ACGTGGGTCTGTTCACCGGCATCTGTGCGTACACGCTGATTGTCGGGCCC
GCAAGAATGTACCTGAGGGTGTTCAAGCAGAACAAAAGCAACTTGCGAGA
GGCAACGAGCGTTCGGCCGTAG