Gcaud2171.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2171.t1
Unique Name	Gcaud2171.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1423_length_10774_cov_3.823739	contig	NODE_1423_length_10774_cov_3.823739:369..2009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2171	Gcaud2171	Gracilaria caudata M_176_S67 male	gene	NODE_1423_length_10774_cov_3.823739 369..2009 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2171.t1.stop1	Gcaud2171.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1423_length_10774_cov_3.823739 369..371 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2171.t1.CDS1	Gcaud2171.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1423_length_10774_cov_3.823739 369..2009 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2171.t1.exon1	Gcaud2171.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1423_length_10774_cov_3.823739 369..2009 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2171.t1.start1	Gcaud2171.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1423_length_10774_cov_3.823739 2007..2009 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2171.t1	Gcaud2171.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1423_length_10774_cov_3.823739 369..2009 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1423_length_10774_cov_3.823739:369..2009-
coding sequence from alignment at NODE_1423_length_10774_cov_3.823739:369..2009-

mRNA sequence

>Gcaud2171.t1 ID=Gcaud2171.t1|Name=Gcaud2171.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=547bp
MSTQQPLSLTFLRSTTARRLGLKPERQQTVREESGIIGTRTNAVPGSLAA
ALDAGVVTAASPEGLPILVGGTNHDTLFELDERDGQFAPSTRVFEEVFAW
QWGCVAPAFKHVVPPQTDPTLVSFATFSTGSISFDAIRESQIEELRPTLR
ARFCEGFEEDADESFNAALTRPVTTDELRSHAAFREIFPPDDDNSPAPNG
FSAISDTPDVANDNPVGRVIISYRHQEFGANRITFDDWQCAVHTVHGVMR
AYGWRKARFWSDARLRQYKRVMAANTGEKVDHKMPWAELGIAPYRFGPVV
VLNLAMKASISDRFWLTVERQTGARFYGTWLSDDTGDLFMYLLSNDLDMY
SRSIVTSVSTSQMLSWPQDREDILSAEWNELDVDDVEEAILLLWEADTFE
AREDFVDEELAEVYIAPKGKTLQWCGDLEAVVDPPSLRSVFGQLGSLSRD
ISLRVVETERTVGETRIVNAMFDMHVNGKKTYLAKRLYVDSDGEIRARSV
PRLVDEDYLDRLLTFKGVRSLDLERKPPYWLVAGAASCQAEERGAG*

spliced messenger RNA

>Gcaud2171.t1 ID=Gcaud2171.t1|Name=Gcaud2171.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at NODE_1423_length_10774_cov_3.823739:369..2009- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCCAGCAACCGTTGTCTCTAACCTTCCTCCGCAGCACCACTGC
CCGTCGCCTCGGTCTCAAGCCGGAGCGCCAGCAGACCGTGCGCGAGGAGA
GCGGCATAATTGGTACGCGCACGAACGCGGTGCCTGGCAGTCTCGCCGCC
GCGTTAGACGCGGGCGTCGTTACAGCCGCAAGTCCAGAAGGGCTCCCAAT
CCTGGTCGGCGGCACCAACCACGACACCCTGTTCGAGCTGGACGAGAGGG
ACGGACAGTTCGCCCCTAGCACGCGAGTCTTCGAAGAAGTCTTTGCTTGG
CAGTGGGGCTGCGTCGCCCCCGCTTTCAAGCACGTGGTACCACCCCAGAC
CGACCCTACCCTAGTCTCATTCGCGACGTTTTCGACGGGCAGTATTTCGT
TTGATGCTATACGCGAAAGTCAAATAGAAGAGCTGCGTCCGACGCTACGT
GCAAGGTTTTGCGAGGGCTTCGAAGAAGACGCTGATGAATCTTTCAACGC
TGCGCTGACACGCCCGGTAACCACGGACGAGCTTCGTTCGCACGCGGCAT
TCCGCGAGATATTCCCTCCGGACGACGACAACAGCCCCGCACCCAACGGT
TTCTCAGCAATATCTGACACGCCCGACGTCGCGAACGACAATCCCGTCGG
CCGGGTTATAATAAGCTACCGCCATCAAGAGTTCGGCGCCAACCGCATCA
CTTTTGACGACTGGCAGTGTGCCGTGCACACCGTGCATGGCGTCATGCGT
GCGTACGGCTGGCGCAAGGCGCGCTTCTGGTCGGATGCGCGCCTGCGCCA
ATACAAGCGCGTCATGGCCGCAAACACCGGCGAGAAAGTCGATCACAAAA
TGCCGTGGGCCGAGCTGGGGATCGCACCCTACCGCTTCGGGCCGGTCGTC
GTGCTCAACCTTGCCATGAAAGCTAGCATCTCGGACCGATTCTGGCTGAC
TGTTGAACGGCAGACCGGTGCGCGTTTTTATGGTACGTGGCTTTCTGATG
ACACCGGCGACTTGTTCATGTACTTGCTGTCCAACGACCTCGATATGTAC
TCGCGCTCGATCGTGACAAGCGTGTCGACCAGCCAAATGCTGTCGTGGCC
ACAAGACCGTGAGGATATCCTGTCCGCCGAATGGAATGAGCTTGACGTCG
ACGACGTGGAGGAGGCCATCCTGTTACTGTGGGAGGCCGATACCTTCGAG
GCCAGGGAGGACTTCGTCGACGAGGAGCTGGCAGAGGTGTACATCGCGCC
GAAGGGGAAGACCTTGCAATGGTGTGGCGATCTAGAGGCGGTGGTTGACC
CCCCGTCTCTTCGAAGCGTGTTTGGGCAGCTGGGGAGTTTGAGCCGTGAT
ATCAGCCTTCGCGTGGTGGAGACTGAGCGAACTGTCGGGGAGACGCGAAT
TGTGAACGCAATGTTTGATATGCATGTGAACGGGAAGAAGACGTACTTAG
CGAAGAGGCTTTATGTGGACTCGGACGGGGAAATCCGGGCAAGGTCAGTA
CCGCGGCTGGTTGATGAGGACTATTTGGACAGGCTGCTAACGTTTAAGGG
GGTGAGGTCGTTGGACTTGGAGCGGAAACCTCCGTACTGGCTCGTCGCGG
GTGCTGCTTCGTGTCAGGCTGAAGAACGCGGTGCCGGATGA

protein sequence of Gcaud2171.t1

>Gcaud2171.t1 ID=Gcaud2171.t1|Name=Gcaud2171.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=547bp
MSTQQPLSLTFLRSTTARRLGLKPERQQTVREESGIIGTRTNAVPGSLAA
ALDAGVVTAASPEGLPILVGGTNHDTLFELDERDGQFAPSTRVFEEVFAW
QWGCVAPAFKHVVPPQTDPTLVSFATFSTGSISFDAIRESQIEELRPTLR
ARFCEGFEEDADESFNAALTRPVTTDELRSHAAFREIFPPDDDNSPAPNG
FSAISDTPDVANDNPVGRVIISYRHQEFGANRITFDDWQCAVHTVHGVMR
AYGWRKARFWSDARLRQYKRVMAANTGEKVDHKMPWAELGIAPYRFGPVV
VLNLAMKASISDRFWLTVERQTGARFYGTWLSDDTGDLFMYLLSNDLDMY
SRSIVTSVSTSQMLSWPQDREDILSAEWNELDVDDVEEAILLLWEADTFE
AREDFVDEELAEVYIAPKGKTLQWCGDLEAVVDPPSLRSVFGQLGSLSRD
ISLRVVETERTVGETRIVNAMFDMHVNGKKTYLAKRLYVDSDGEIRARSV
PRLVDEDYLDRLLTFKGVRSLDLERKPPYWLVAGAASCQAEERGAG*

mRNA from alignment at NODE_1423_length_10774_cov_3.823739:369..2009-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2171.t1 ID=Gcaud2171.t1|Name=Gcaud2171.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at NODE_1423_length_10774_cov_3.823739:369..2009- (Gracilaria caudata M_176_S67 male)
ATGTCCACCCAGCAACCGTTGTCTCTAACCTTCCTCCGCAGCACCACTGC
CCGTCGCCTCGGTCTCAAGCCGGAGCGCCAGCAGACCGTGCGCGAGGAGA
GCGGCATAATTGGTACGCGCACGAACGCGGTGCCTGGCAGTCTCGCCGCC
GCGTTAGACGCGGGCGTCGTTACAGCCGCAAGTCCAGAAGGGCTCCCAAT
CCTGGTCGGCGGCACCAACCACGACACCCTGTTCGAGCTGGACGAGAGGG
ACGGACAGTTCGCCCCTAGCACGCGAGTCTTCGAAGAAGTCTTTGCTTGG
CAGTGGGGCTGCGTCGCCCCCGCTTTCAAGCACGTGGTACCACCCCAGAC
CGACCCTACCCTAGTCTCATTCGCGACGTTTTCGACGGGCAGTATTTCGT
TTGATGCTATACGCGAAAGTCAAATAGAAGAGCTGCGTCCGACGCTACGT
GCAAGGTTTTGCGAGGGCTTCGAAGAAGACGCTGATGAATCTTTCAACGC
TGCGCTGACACGCCCGGTAACCACGGACGAGCTTCGTTCGCACGCGGCAT
TCCGCGAGATATTCCCTCCGGACGACGACAACAGCCCCGCACCCAACGGT
TTCTCAGCAATATCTGACACGCCCGACGTCGCGAACGACAATCCCGTCGG
CCGGGTTATAATAAGCTACCGCCATCAAGAGTTCGGCGCCAACCGCATCA
CTTTTGACGACTGGCAGTGTGCCGTGCACACCGTGCATGGCGTCATGCGT
GCGTACGGCTGGCGCAAGGCGCGCTTCTGGTCGGATGCGCGCCTGCGCCA
ATACAAGCGCGTCATGGCCGCAAACACCGGCGAGAAAGTCGATCACAAAA
TGCCGTGGGCCGAGCTGGGGATCGCACCCTACCGCTTCGGGCCGGTCGTC
GTGCTCAACCTTGCCATGAAAGCTAGCATCTCGGACCGATTCTGGCTGAC
TGTTGAACGGCAGACCGGTGCGCGTTTTTATGGTACGTGGCTTTCTGATG
ACACCGGCGACTTGTTCATGTACTTGCTGTCCAACGACCTCGATATGTAC
TCGCGCTCGATCGTGACAAGCGTGTCGACCAGCCAAATGCTGTCGTGGCC
ACAAGACCGTGAGGATATCCTGTCCGCCGAATGGAATGAGCTTGACGTCG
ACGACGTGGAGGAGGCCATCCTGTTACTGTGGGAGGCCGATACCTTCGAG
GCCAGGGAGGACTTCGTCGACGAGGAGCTGGCAGAGGTGTACATCGCGCC
GAAGGGGAAGACCTTGCAATGGTGTGGCGATCTAGAGGCGGTGGTTGACC
CCCCGTCTCTTCGAAGCGTGTTTGGGCAGCTGGGGAGTTTGAGCCGTGAT
ATCAGCCTTCGCGTGGTGGAGACTGAGCGAACTGTCGGGGAGACGCGAAT
TGTGAACGCAATGTTTGATATGCATGTGAACGGGAAGAAGACGTACTTAG
CGAAGAGGCTTTATGTGGACTCGGACGGGGAAATCCGGGCAAGGTCAGTA
CCGCGGCTGGTTGATGAGGACTATTTGGACAGGCTGCTAACGTTTAAGGG
GGTGAGGTCGTTGGACTTGGAGCGGAAACCTCCGTACTGGCTCGTCGCGG
GTGCTGCTTCGTGTCAGGCTGAAGAACGCGGTGCCGGATGA

Coding sequence (CDS) from alignment at NODE_1423_length_10774_cov_3.823739:369..2009-

>Gcaud2171.t1 ID=Gcaud2171.t1|Name=Gcaud2171.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1641bp|location=Sequence derived from alignment at NODE_1423_length_10774_cov_3.823739:369..2009- (Gracilaria caudata M_176_S67 male)
ATGTCCACCCAGCAACCGTTGTCTCTAACCTTCCTCCGCAGCACCACTGC
CCGTCGCCTCGGTCTCAAGCCGGAGCGCCAGCAGACCGTGCGCGAGGAGA
GCGGCATAATTGGTACGCGCACGAACGCGGTGCCTGGCAGTCTCGCCGCC
GCGTTAGACGCGGGCGTCGTTACAGCCGCAAGTCCAGAAGGGCTCCCAAT
CCTGGTCGGCGGCACCAACCACGACACCCTGTTCGAGCTGGACGAGAGGG
ACGGACAGTTCGCCCCTAGCACGCGAGTCTTCGAAGAAGTCTTTGCTTGG
CAGTGGGGCTGCGTCGCCCCCGCTTTCAAGCACGTGGTACCACCCCAGAC
CGACCCTACCCTAGTCTCATTCGCGACGTTTTCGACGGGCAGTATTTCGT
TTGATGCTATACGCGAAAGTCAAATAGAAGAGCTGCGTCCGACGCTACGT
GCAAGGTTTTGCGAGGGCTTCGAAGAAGACGCTGATGAATCTTTCAACGC
TGCGCTGACACGCCCGGTAACCACGGACGAGCTTCGTTCGCACGCGGCAT
TCCGCGAGATATTCCCTCCGGACGACGACAACAGCCCCGCACCCAACGGT
TTCTCAGCAATATCTGACACGCCCGACGTCGCGAACGACAATCCCGTCGG
CCGGGTTATAATAAGCTACCGCCATCAAGAGTTCGGCGCCAACCGCATCA
CTTTTGACGACTGGCAGTGTGCCGTGCACACCGTGCATGGCGTCATGCGT
GCGTACGGCTGGCGCAAGGCGCGCTTCTGGTCGGATGCGCGCCTGCGCCA
ATACAAGCGCGTCATGGCCGCAAACACCGGCGAGAAAGTCGATCACAAAA
TGCCGTGGGCCGAGCTGGGGATCGCACCCTACCGCTTCGGGCCGGTCGTC
GTGCTCAACCTTGCCATGAAAGCTAGCATCTCGGACCGATTCTGGCTGAC
TGTTGAACGGCAGACCGGTGCGCGTTTTTATGGTACGTGGCTTTCTGATG
ACACCGGCGACTTGTTCATGTACTTGCTGTCCAACGACCTCGATATGTAC
TCGCGCTCGATCGTGACAAGCGTGTCGACCAGCCAAATGCTGTCGTGGCC
ACAAGACCGTGAGGATATCCTGTCCGCCGAATGGAATGAGCTTGACGTCG
ACGACGTGGAGGAGGCCATCCTGTTACTGTGGGAGGCCGATACCTTCGAG
GCCAGGGAGGACTTCGTCGACGAGGAGCTGGCAGAGGTGTACATCGCGCC
GAAGGGGAAGACCTTGCAATGGTGTGGCGATCTAGAGGCGGTGGTTGACC
CCCCGTCTCTTCGAAGCGTGTTTGGGCAGCTGGGGAGTTTGAGCCGTGAT
ATCAGCCTTCGCGTGGTGGAGACTGAGCGAACTGTCGGGGAGACGCGAAT
TGTGAACGCAATGTTTGATATGCATGTGAACGGGAAGAAGACGTACTTAG
CGAAGAGGCTTTATGTGGACTCGGACGGGGAAATCCGGGCAAGGTCAGTA
CCGCGGCTGGTTGATGAGGACTATTTGGACAGGCTGCTAACGTTTAAGGG
GGTGAGGTCGTTGGACTTGGAGCGGAAACCTCCGTACTGGCTCGTCGCGG
GTGCTGCTTCGTGTCAGGCTGAAGAACGCGGTGCCGGATGA