Gcaud2168.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2168.t1
Unique NameGcaud2168.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1305_length_11579_cov_8.061368contigNODE_1305_length_11579_cov_8.061368:5785..6503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2168Gcaud2168Gracilaria caudata M_176_S67 malegeneNODE_1305_length_11579_cov_8.061368 5785..6503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2168.t1Gcaud2168.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1305_length_11579_cov_8.061368 5785..6503 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2168.t1.stop1Gcaud2168.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1305_length_11579_cov_8.061368 5785..5787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2168.t1.CDS1Gcaud2168.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1305_length_11579_cov_8.061368 5785..6115 -
Gcaud2168.t1.CDS2Gcaud2168.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1305_length_11579_cov_8.061368 6199..6232 -
Gcaud2168.t1.CDS3Gcaud2168.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1305_length_11579_cov_8.061368 6365..6394 -
Gcaud2168.t1.CDS4Gcaud2168.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1305_length_11579_cov_8.061368 6488..6503 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2168.t1.exon1Gcaud2168.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1305_length_11579_cov_8.061368 5785..6115 -
Gcaud2168.t1.exon2Gcaud2168.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1305_length_11579_cov_8.061368 6199..6232 -
Gcaud2168.t1.exon3Gcaud2168.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1305_length_11579_cov_8.061368 6365..6394 -
Gcaud2168.t1.exon4Gcaud2168.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1305_length_11579_cov_8.061368 6488..6503 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2168.t1.intron1Gcaud2168.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1305_length_11579_cov_8.061368 6116..6198 -
Gcaud2168.t1.intron2Gcaud2168.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1305_length_11579_cov_8.061368 6233..6364 -
Gcaud2168.t1.intron3Gcaud2168.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1305_length_11579_cov_8.061368 6395..6487 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2168.t1.start1Gcaud2168.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1305_length_11579_cov_8.061368 6501..6503 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2168.t1 ID=Gcaud2168.t1|Name=Gcaud2168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=137bp
MPICPNAILRHLQFEVKFSTVSSTKCRGVYDGTEVSSVQGHSANPRAANV
FGATAFRPYLDSTPVHDCMTTVSKTVFISSSSDLSSRINIGFTAWATSFA
SVGSIKVIMNPMAFKNDAKVFSLCNRIPLRKASQPD*
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spliced messenger RNA

>Gcaud2168.t1 ID=Gcaud2168.t1|Name=Gcaud2168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=411bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:5785..6503- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATATGTCCCAACGCCATTTTACGACACCTACAATTTGAAGTGAA
GTTTTCAACAGTTTCGAGTACTAAATGCCGTGGTGTCTATGACGGTACGG
AAGTTTCGTCGGTCCAGGGCCATTCGGCGAATCCAAGAGCAGCGAATGTA
TTTGGAGCAACGGCTTTCCGACCATATCTCGACTCAACGCCTGTACACGA
TTGCATGACTACTGTGAGCAAAACCGTTTTCATTTCTTCATCCAGTGACT
TGAGTTCCCGAATCAATATTGGATTTACGGCCTGGGCCACTTCATTCGCT
TCCGTTGGTTCTATAAAAGTCATCATGAACCCAATGGCTTTTAAGAACGA
TGCCAAAGTCTTTTCTCTATGCAATAGAATCCCGCTCCGTAAAGCCTCTC
AACCCGATTGA
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protein sequence of Gcaud2168.t1

>Gcaud2168.t1 ID=Gcaud2168.t1|Name=Gcaud2168.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=137bp
MPICPNAILRHLQFEVKFSTVSSTKCRGVYDGTEVSSVQGHSANPRAANV
FGATAFRPYLDSTPVHDCMTTVSKTVFISSSSDLSSRINIGFTAWATSFA
SVGSIKVIMNPMAFKNDAKVFSLCNRIPLRKASQPD*
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mRNA from alignment at NODE_1305_length_11579_cov_8.061368:5785..6503-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2168.t1 ID=Gcaud2168.t1|Name=Gcaud2168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=719bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:5785..6503- (Gracilaria caudata M_176_S67 male)
ATGCCCATATGTCCCAGTAAGGAATCCTCATCGCTGTTGTTTATGACTTT
CGCAATGTTGCTGACCAAATCCGCCGCATTCTTCGCATCTTGGCGCTCTC
GTTGTTCAGACGCCATTTTACGACACCTACAATTTGAAGGTATGGTTTTG
CTCTACGAATTAGTTTTTGAATAAGGACCGGTAATGCTCTCAGCGCACTT
CCAGAATCATAAACCATCTGTTAGTTGGGACTCTCAAACACCGCTCACAC
CTGACAACCCTTGTTTTTCAGTGAAGTTTTCAACAGTTTCGAGTACTAAA
TGCCGGTATGGGTCTGGGTTACCCTTCACATCTCTTACGAGACGACCCAA
AAAATTTGGGACACCAATTTTCCCTTCGATCGGTAAAGTGGTGTCTATGA
CGGTACGGAAGTTTCGTCGGTCCAGGGCCATTCGGCGAATCCAAGAGCAG
CGAATGTATTTGGAGCAACGGCTTTCCGACCATATCTCGACTCAACGCCT
GTACACGATTGCATGACTACTGTGAGCAAAACCGTTTTCATTTCTTCATC
CAGTGACTTGAGTTCCCGAATCAATATTGGATTTACGGCCTGGGCCACTT
CATTCGCTTCCGTTGGTTCTATAAAAGTCATCATGAACCCAATGGCTTTT
AAGAACGATGCCAAAGTCTTTTCTCTATGCAATAGAATCCCGCTCCGTAA
AGCCTCTCAACCCGATTGA
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Coding sequence (CDS) from alignment at NODE_1305_length_11579_cov_8.061368:5785..6503-

>Gcaud2168.t1 ID=Gcaud2168.t1|Name=Gcaud2168.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=411bp|location=Sequence derived from alignment at NODE_1305_length_11579_cov_8.061368:5785..6503- (Gracilaria caudata M_176_S67 male)
ATGCCCATATGTCCCAACGCCATTTTACGACACCTACAATTTGAAGTGAA
GTTTTCAACAGTTTCGAGTACTAAATGCCGTGGTGTCTATGACGGTACGG
AAGTTTCGTCGGTCCAGGGCCATTCGGCGAATCCAAGAGCAGCGAATGTA
TTTGGAGCAACGGCTTTCCGACCATATCTCGACTCAACGCCTGTACACGA
TTGCATGACTACTGTGAGCAAAACCGTTTTCATTTCTTCATCCAGTGACT
TGAGTTCCCGAATCAATATTGGATTTACGGCCTGGGCCACTTCATTCGCT
TCCGTTGGTTCTATAAAAGTCATCATGAACCCAATGGCTTTTAAGAACGA
TGCCAAAGTCTTTTCTCTATGCAATAGAATCCCGCTCCGTAAAGCCTCTC
AACCCGATTGA
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