Gcaud2160.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2160.t1
Unique NameGcaud2160.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length57
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2505_length_5448_cov_4.257234contigNODE_2505_length_5448_cov_4.257234:1126..2328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2160Gcaud2160Gracilaria caudata M_176_S67 malegeneNODE_2505_length_5448_cov_4.257234 1126..2328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2160.t1Gcaud2160.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2505_length_5448_cov_4.257234 1126..2328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2160.t1.CDS1Gcaud2160.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 1126..1130 -
Gcaud2160.t1.CDS2Gcaud2160.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 1211..1253 -
Gcaud2160.t1.CDS3Gcaud2160.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 1342..1351 -
Gcaud2160.t1.CDS4Gcaud2160.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 1452..1462 -
Gcaud2160.t1.CDS5Gcaud2160.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 1550..1581 -
Gcaud2160.t1.CDS6Gcaud2160.t1.CDS6Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 1665..1669 -
Gcaud2160.t1.CDS7Gcaud2160.t1.CDS7Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 2179..2193 -
Gcaud2160.t1.CDS8Gcaud2160.t1.CDS8Gracilaria caudata M_176_S67 maleCDSNODE_2505_length_5448_cov_4.257234 2281..2328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2160.t1.exon1Gcaud2160.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 1126..1130 -
Gcaud2160.t1.exon2Gcaud2160.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 1211..1253 -
Gcaud2160.t1.exon3Gcaud2160.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 1342..1351 -
Gcaud2160.t1.exon4Gcaud2160.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 1452..1462 -
Gcaud2160.t1.exon5Gcaud2160.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 1550..1581 -
Gcaud2160.t1.exon6Gcaud2160.t1.exon6Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 1665..1669 -
Gcaud2160.t1.exon7Gcaud2160.t1.exon7Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 2179..2193 -
Gcaud2160.t1.exon8Gcaud2160.t1.exon8Gracilaria caudata M_176_S67 maleexonNODE_2505_length_5448_cov_4.257234 2281..2328 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2160.t1.intron1Gcaud2160.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2505_length_5448_cov_4.257234 1131..1210 -
Gcaud2160.t1.intron2Gcaud2160.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2505_length_5448_cov_4.257234 1254..1341 -
Gcaud2160.t1.intron3Gcaud2160.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_2505_length_5448_cov_4.257234 1352..1451 -
Gcaud2160.t1.intron4Gcaud2160.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_2505_length_5448_cov_4.257234 1463..1549 -
Gcaud2160.t1.intron5Gcaud2160.t1.intron5Gracilaria caudata M_176_S67 maleintronNODE_2505_length_5448_cov_4.257234 1582..1664 -
Gcaud2160.t1.intron6Gcaud2160.t1.intron6Gracilaria caudata M_176_S67 maleintronNODE_2505_length_5448_cov_4.257234 1670..2178 -
Gcaud2160.t1.intron7Gcaud2160.t1.intron7Gracilaria caudata M_176_S67 maleintronNODE_2505_length_5448_cov_4.257234 2194..2280 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2160.t1.start1Gcaud2160.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2505_length_5448_cov_4.257234 2326..2328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2160.t1 ID=Gcaud2160.t1|Name=Gcaud2160.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=57bp
MEEPPISFQNNRSSWNNGLDGYIDEDVAALRRTCEHDGIAGGALEAYWNN
SIATDNX
back to top

spliced messenger RNA

>Gcaud2160.t1 ID=Gcaud2160.t1|Name=Gcaud2160.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=169bp|location=Sequence derived from alignment at NODE_2505_length_5448_cov_4.257234:1126..2328- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGCCGCCGATAAGTTTCCAGAACAACCGCAGCAGCTGGAATAA
TGGGCTGGATGGGTACATTGATGAGGATGTTGCTGCTCTCCGACGAACAT
GCGAGCATGACGGCATCGCTGGAGGTGCGCTTGAGGCCTATTGGAACAAC
TCAATTGCGACTGACAACT
back to top

protein sequence of Gcaud2160.t1

>Gcaud2160.t1 ID=Gcaud2160.t1|Name=Gcaud2160.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=57bp
MEEPPISFQNNRSSWNNGLDGYIDEDVAALRRTCEHDGIAGGALEAYWNN
SIATDNX
back to top

mRNA from alignment at NODE_2505_length_5448_cov_4.257234:1126..2328-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2160.t1 ID=Gcaud2160.t1|Name=Gcaud2160.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_2505_length_5448_cov_4.257234:1126..2328- (Gracilaria caudata M_176_S67 male)
ATGGAGGAGCCGCCGATAAGTTTCCAGAACAACCGCAGCAGCTGGAATGT
GCGTTCTTCATCTTTCTTCTTCATGTATCTTTTTGATTCTCTTGCTGACG
CCATTGTTTGCATCTTTATGTCATGCGTGGAAAAGAATGGGCTGGATGGG
GTAATCAGGGACCATCTGCTTCAACATCAATCCTATCTCAATTGGACCTG
CTCCTCTATGCTTCCCTTCAACCAAAACGGCAGAACCGACTTTAACGCTT
TCGTATCCAACATGGAGGATTGTACAAACAAATCAACAGGACAAATCATA
GATTCTCCAGATTGTATGTGCGATATTGGCATTGGCGGCTGGTTTCCGGG
CCCCGATCGATTTGGAAGAGTCACCTTCTTACCTCCGTTTGCGCACGATC
GATGCGTCGTGTTCACACGCGTTTCTGAGGCCACAGTTTCTGGAAGAGTT
TGGTTCTTCCTTCAGACCTTTGACGCCAAAGTTTGGATTTGCATTGTGGG
ATCGTTCGTGATGTTTACATTTCTAAAGCTGCTGGATTGTAAATTCGAGC
CTGATGATCAATGTCCACCTGCCCCGCCCTCGACTAGCACAATCGGGCGT
TATGTACATTATCTCACGAAGAGTCGTCCGCTCTATCGACTAAGGAAGGC
CACTCAAAGTACATGTAAGTACTACCGTATCCTTAACCTTTTCTTCTTCG
TATGGGACATGTACAACTGACTTTCAACTTTCATGTACCTTGTTCAGTGA
TGAGGATGTTGCTGCTCTCCGACGAACATGTCGTTACTCATGAGAAGACC
ACGCGTCAATGGTTTCTCAACATGATTCTTGCAGTAGCCTCGCTGTTCAT
CATATTATCCTACGAGGCGAGCATGACGTACGTATCCCACAACTTGCAAC
GTTTTGTACTGGTCCTGCAACTGAGAATGGCCACGCCGCTAACGTTGACC
CACATTCTGTATTGCTCACCATGTCAGGGCATCGCTGGTGCAGGAGTCCA
TCCAGACCAGGTTTCGATCGGCTGCAGATTTTCAGAATTGCCGAATCGAC
CCTTCGGAAACATGCATCCTTCGAGGAGGTGCGCTTGAGGCCTATTGGAA
CAACTCAATTGCGACTGAGTAAGTTGCACGGTGTTCGGAACCGTTTAAGT
GTTTAATGGGCTTACAACTAACTAACGGGTTCGTTTGTCTCACTGCAGCA
ACT
back to top

Coding sequence (CDS) from alignment at NODE_2505_length_5448_cov_4.257234:1126..2328-

>Gcaud2160.t1 ID=Gcaud2160.t1|Name=Gcaud2160.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=169bp|location=Sequence derived from alignment at NODE_2505_length_5448_cov_4.257234:1126..2328- (Gracilaria caudata M_176_S67 male)
ATGGAGGAGCCGCCGATAAGTTTCCAGAACAACCGCAGCAGCTGGAATAA
TGGGCTGGATGGGTACATTGATGAGGATGTTGCTGCTCTCCGACGAACAT
GCGAGCATGACGGCATCGCTGGAGGTGCGCTTGAGGCCTATTGGAACAAC
TCAATTGCGACTGACAACT
back to top