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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 215358.XP_010740839.1 |
| Preferred name | DYM |
| PFAMs | Dymeclin |
| Max annot lvl | 33208|Metazoa |
| GOs | GO:0001501,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006996,GO:0007030,GO:0007275,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016043,GO:0019899,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0060348,GO:0071840 |
| Evalue | 5.5e-23 |
| EggNOG OGs | KOG2225@1|root,KOG2225@2759|Eukaryota,38E6N@33154|Opisthokonta,3BDG6@33208|Metazoa,3CX1G@33213|Bilateria,486HB@7711|Chordata,4927B@7742|Vertebrata,4A0RF@7898|Actinopterygii |
| Description | Dymeclin |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2158.t1.stop1 | Gcaud2158.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1718_length_8829_cov_4.218585 4672..4674 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2158.t1.start1 | Gcaud2158.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1718_length_8829_cov_4.218585 7285..7287 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2158.t1 ID=Gcaud2158.t1|Name=Gcaud2158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=872bp MGASESTLLSPHSPQTRRTSFKHTVSHVLQQGKPLHLLLNPSSPLPPDPE SPFYNALFDDFMTLHFASARPLATLVELSIENPKEQHAIALVCALRAAVH RLRSAQGLVLLGALVFSHSSLTELMRISKSEDSLCLTLGAGHAESSLQEA DRIDLGKSLVARILTAALDVLATPQSTDLASHIKLCAVDLLLIALCDELY SVSHAHQPISTLLDRYPHPAKVIHVLFDCLTDAAPGVNVETHLNIGCEQI PAVQRVIPGNSTVPRLSPSGALFAASNSVANLQVSVNNALSAITSRIALS PLGAGIGVFPDPAAEAHIAGFASNHIQSPTANNSTTLSPRAASGRRLSNS TSSSVSGQSRNGFKKFFSSASDVYHETARAKSFTDDSSERSPRSPALSNK SPRAPLHREKGKLHLFSPPKPTHIAEQALSLLVILCGPRPSGQYRQALFD MNDSARLEEEDEHSYPFPKLYETLGKWLAHPKAALLGYYLVTGNKRFRTF ALARTDPDVLLLPLLASLRRRCVVGAIPADAYIPAAIMLTLTSDKGFCEA IDSISVPGSFVPYLEDPARIGNERIVMSGMMLLICARALQQSLVMRRKRP DRFLATLLLAIMGNVSGDVTNLHSLAAERLLSLVEFLGRRRRKALILEYQ NENMPKRPPRLGDSPKAQDHAISKERAIDMESIFESTMTSFGSPKLSDLI MDYIGVAFEVVVSVLRSRSHVSANRHLVYTLLHRESIVEMDHIAKISDQT RALCHMLRRMLDFFVELVEDQREASSDSSIAKIRANKPLNSSSTGISVER VFHIIDKNARHMRSDTFDGVPETRFRYEELELAKVFLRPYSWSIVTRSTD MFWELDTATMPISLAPFRPSC* back to topspliced messenger RNA >Gcaud2158.t1 ID=Gcaud2158.t1|Name=Gcaud2158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2616bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:4672..7287- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGCGCCAGCGAGTCCACCCTGCTCTCTCCGCACTCTCCTCAAACACG ACGCACTTCATTCAAACATACGGTTTCCCACGTCTTGCAACAGGGAAAAC CTTTGCACCTTCTTCTCAACCCATCATCCCCACTACCACCTGATCCAGAG TCACCTTTTTACAATGCTCTGTTCGATGATTTTATGACCCTACATTTTGC TTCGGCTCGCCCTCTTGCAACACTCGTCGAACTGTCTATTGAGAATCCGA AAGAACAACATGCGATCGCGCTTGTGTGTGCTCTTCGCGCGGCTGTGCAC CGATTGCGCTCCGCACAAGGTTTAGTTCTGCTCGGTGCTTTAGTTTTCTC TCATTCGTCGTTGACCGAGCTCATGCGAATATCAAAATCGGAGGACTCTC TCTGCCTCACTCTCGGAGCCGGTCATGCCGAAAGCTCTTTGCAAGAAGCC GATCGCATTGACCTTGGAAAATCGCTTGTAGCTCGCATTTTGACAGCAGC ACTTGATGTACTTGCCACCCCACAATCGACCGATCTTGCGTCCCATATCA AGCTTTGCGCGGTCGATCTGCTCCTCATAGCGCTTTGCGACGAGCTATAC AGTGTCTCACATGCGCATCAACCTATATCCACGCTACTAGATCGATATCC ACATCCTGCCAAGGTCATACATGTCTTGTTTGACTGCCTCACTGACGCTG CACCAGGCGTTAATGTCGAAACGCATCTGAACATTGGATGTGAACAAATC CCTGCCGTGCAACGCGTGATTCCTGGCAACAGCACAGTTCCGCGCCTGTC GCCTTCTGGTGCGCTGTTTGCCGCAAGTAACAGCGTGGCAAATCTTCAAG TCAGTGTTAATAACGCGCTCTCCGCCATTACATCCAGAATTGCTCTCTCT CCGCTTGGTGCAGGCATTGGAGTCTTTCCAGACCCTGCCGCGGAGGCACA TATTGCTGGCTTTGCATCGAATCATATACAATCCCCAACGGCGAACAATT CTACTACTCTTTCTCCTCGTGCTGCATCGGGGCGAAGGTTAAGCAACTCC ACTAGTTCATCTGTGTCAGGACAAAGTCGAAATGGATTCAAAAAGTTTTT CTCGAGCGCAAGCGATGTGTACCATGAAACAGCTCGAGCGAAATCGTTCA CAGATGACAGCTCTGAGCGCTCACCACGATCGCCTGCTCTCTCGAACAAA TCTCCGCGTGCACCGTTGCATAGAGAGAAAGGGAAACTTCATCTCTTTTC ACCTCCTAAACCGACACATATCGCGGAACAAGCCTTATCACTTCTGGTTA TACTTTGTGGTCCACGGCCATCAGGTCAGTATCGTCAAGCCCTGTTTGAC ATGAATGACTCTGCAAGGCTAGAGGAAGAAGACGAACACTCGTATCCATT CCCAAAGCTTTACGAGACTCTTGGAAAGTGGCTGGCACATCCGAAGGCAG CCCTGCTGGGGTATTACCTAGTGACTGGTAATAAGCGCTTTCGTACTTTT GCTTTGGCGAGGACGGATCCCGACGTACTTCTTCTACCCCTTCTGGCCTC ACTGCGACGGAGATGCGTTGTAGGCGCCATCCCAGCGGACGCGTACATAC CGGCTGCAATAATGCTCACCTTAACTAGTGATAAGGGTTTCTGCGAAGCT ATCGACTCCATCAGCGTTCCTGGCTCCTTTGTTCCGTACTTGGAAGACCC AGCGAGGATTGGTAATGAAAGAATTGTAATGAGCGGAATGATGTTGCTTA TCTGTGCACGGGCACTGCAGCAGAGTTTAGTAATGCGGCGAAAAAGGCCC GATCGTTTTCTGGCGACTCTACTGCTCGCTATAATGGGTAATGTTTCAGG AGATGTGACGAACTTGCATTCTTTAGCTGCCGAAAGACTATTGTCGTTGG TTGAGTTCTTAGGTCGCCGTCGCAGAAAGGCATTGATACTTGAGTATCAG AATGAAAACATGCCTAAGAGACCACCCCGATTGGGTGATAGTCCTAAGGC TCAAGATCACGCTATCTCAAAAGAGAGAGCAATCGACATGGAAAGTATAT TCGAATCAACTATGACATCTTTCGGGAGTCCCAAGCTCTCGGACTTGATT ATGGATTACATTGGTGTTGCTTTCGAGGTTGTGGTTTCTGTTTTGCGTTC TCGAAGTCATGTGTCGGCAAACAGACACTTGGTTTACACGCTGCTACACC GCGAATCTATTGTGGAAATGGACCACATTGCGAAAATATCAGATCAAACA AGAGCACTGTGTCACATGCTGCGTCGTATGCTTGACTTTTTTGTTGAACT TGTTGAAGATCAGAGAGAGGCCAGTTCTGATTCAAGTATTGCAAAGATTC GTGCAAACAAACCTCTGAACTCCTCTTCGACCGGAATTTCAGTCGAACGT GTTTTCCATATTATTGATAAGAATGCTCGACATATGAGGTCGGATACGTT TGATGGAGTGCCAGAAACTCGGTTTCGATATGAAGAACTGGAGCTCGCAA AGGTGTTCTTAAGGCCGTATTCTTGGTCGATAGTGACTCGCTCGACTGAT ATGTTCTGGGAACTTGATACCGCGACTATGCCTATTTCGCTAGCTCCTTT CCGACCTTCTTGCTGA back to topprotein sequence of Gcaud2158.t1 >Gcaud2158.t1 ID=Gcaud2158.t1|Name=Gcaud2158.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=872bp
MGASESTLLSPHSPQTRRTSFKHTVSHVLQQGKPLHLLLNPSSPLPPDPE SPFYNALFDDFMTLHFASARPLATLVELSIENPKEQHAIALVCALRAAVH RLRSAQGLVLLGALVFSHSSLTELMRISKSEDSLCLTLGAGHAESSLQEA DRIDLGKSLVARILTAALDVLATPQSTDLASHIKLCAVDLLLIALCDELY SVSHAHQPISTLLDRYPHPAKVIHVLFDCLTDAAPGVNVETHLNIGCEQI PAVQRVIPGNSTVPRLSPSGALFAASNSVANLQVSVNNALSAITSRIALS PLGAGIGVFPDPAAEAHIAGFASNHIQSPTANNSTTLSPRAASGRRLSNS TSSSVSGQSRNGFKKFFSSASDVYHETARAKSFTDDSSERSPRSPALSNK SPRAPLHREKGKLHLFSPPKPTHIAEQALSLLVILCGPRPSGQYRQALFD MNDSARLEEEDEHSYPFPKLYETLGKWLAHPKAALLGYYLVTGNKRFRTF ALARTDPDVLLLPLLASLRRRCVVGAIPADAYIPAAIMLTLTSDKGFCEA IDSISVPGSFVPYLEDPARIGNERIVMSGMMLLICARALQQSLVMRRKRP DRFLATLLLAIMGNVSGDVTNLHSLAAERLLSLVEFLGRRRRKALILEYQ NENMPKRPPRLGDSPKAQDHAISKERAIDMESIFESTMTSFGSPKLSDLI MDYIGVAFEVVVSVLRSRSHVSANRHLVYTLLHRESIVEMDHIAKISDQT RALCHMLRRMLDFFVELVEDQREASSDSSIAKIRANKPLNSSSTGISVER VFHIIDKNARHMRSDTFDGVPETRFRYEELELAKVFLRPYSWSIVTRSTD MFWELDTATMPISLAPFRPSC* back to topmRNA from alignment at NODE_1718_length_8829_cov_4.218585:4672..7287- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2158.t1 ID=Gcaud2158.t1|Name=Gcaud2158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2616bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:4672..7287- (Gracilaria caudata M_176_S67 male) ATGGGCGCCAGCGAGTCCACCCTGCTCTCTCCGCACTCTCCTCAAACACG
ACGCACTTCATTCAAACATACGGTTTCCCACGTCTTGCAACAGGGAAAAC
CTTTGCACCTTCTTCTCAACCCATCATCCCCACTACCACCTGATCCAGAG
TCACCTTTTTACAATGCTCTGTTCGATGATTTTATGACCCTACATTTTGC
TTCGGCTCGCCCTCTTGCAACACTCGTCGAACTGTCTATTGAGAATCCGA
AAGAACAACATGCGATCGCGCTTGTGTGTGCTCTTCGCGCGGCTGTGCAC
CGATTGCGCTCCGCACAAGGTTTAGTTCTGCTCGGTGCTTTAGTTTTCTC
TCATTCGTCGTTGACCGAGCTCATGCGAATATCAAAATCGGAGGACTCTC
TCTGCCTCACTCTCGGAGCCGGTCATGCCGAAAGCTCTTTGCAAGAAGCC
GATCGCATTGACCTTGGAAAATCGCTTGTAGCTCGCATTTTGACAGCAGC
ACTTGATGTACTTGCCACCCCACAATCGACCGATCTTGCGTCCCATATCA
AGCTTTGCGCGGTCGATCTGCTCCTCATAGCGCTTTGCGACGAGCTATAC
AGTGTCTCACATGCGCATCAACCTATATCCACGCTACTAGATCGATATCC
ACATCCTGCCAAGGTCATACATGTCTTGTTTGACTGCCTCACTGACGCTG
CACCAGGCGTTAATGTCGAAACGCATCTGAACATTGGATGTGAACAAATC
CCTGCCGTGCAACGCGTGATTCCTGGCAACAGCACAGTTCCGCGCCTGTC
GCCTTCTGGTGCGCTGTTTGCCGCAAGTAACAGCGTGGCAAATCTTCAAG
TCAGTGTTAATAACGCGCTCTCCGCCATTACATCCAGAATTGCTCTCTCT
CCGCTTGGTGCAGGCATTGGAGTCTTTCCAGACCCTGCCGCGGAGGCACA
TATTGCTGGCTTTGCATCGAATCATATACAATCCCCAACGGCGAACAATT
CTACTACTCTTTCTCCTCGTGCTGCATCGGGGCGAAGGTTAAGCAACTCC
ACTAGTTCATCTGTGTCAGGACAAAGTCGAAATGGATTCAAAAAGTTTTT
CTCGAGCGCAAGCGATGTGTACCATGAAACAGCTCGAGCGAAATCGTTCA
CAGATGACAGCTCTGAGCGCTCACCACGATCGCCTGCTCTCTCGAACAAA
TCTCCGCGTGCACCGTTGCATAGAGAGAAAGGGAAACTTCATCTCTTTTC
ACCTCCTAAACCGACACATATCGCGGAACAAGCCTTATCACTTCTGGTTA
TACTTTGTGGTCCACGGCCATCAGGTCAGTATCGTCAAGCCCTGTTTGAC
ATGAATGACTCTGCAAGGCTAGAGGAAGAAGACGAACACTCGTATCCATT
CCCAAAGCTTTACGAGACTCTTGGAAAGTGGCTGGCACATCCGAAGGCAG
CCCTGCTGGGGTATTACCTAGTGACTGGTAATAAGCGCTTTCGTACTTTT
GCTTTGGCGAGGACGGATCCCGACGTACTTCTTCTACCCCTTCTGGCCTC
ACTGCGACGGAGATGCGTTGTAGGCGCCATCCCAGCGGACGCGTACATAC
CGGCTGCAATAATGCTCACCTTAACTAGTGATAAGGGTTTCTGCGAAGCT
ATCGACTCCATCAGCGTTCCTGGCTCCTTTGTTCCGTACTTGGAAGACCC
AGCGAGGATTGGTAATGAAAGAATTGTAATGAGCGGAATGATGTTGCTTA
TCTGTGCACGGGCACTGCAGCAGAGTTTAGTAATGCGGCGAAAAAGGCCC
GATCGTTTTCTGGCGACTCTACTGCTCGCTATAATGGGTAATGTTTCAGG
AGATGTGACGAACTTGCATTCTTTAGCTGCCGAAAGACTATTGTCGTTGG
TTGAGTTCTTAGGTCGCCGTCGCAGAAAGGCATTGATACTTGAGTATCAG
AATGAAAACATGCCTAAGAGACCACCCCGATTGGGTGATAGTCCTAAGGC
TCAAGATCACGCTATCTCAAAAGAGAGAGCAATCGACATGGAAAGTATAT
TCGAATCAACTATGACATCTTTCGGGAGTCCCAAGCTCTCGGACTTGATT
ATGGATTACATTGGTGTTGCTTTCGAGGTTGTGGTTTCTGTTTTGCGTTC
TCGAAGTCATGTGTCGGCAAACAGACACTTGGTTTACACGCTGCTACACC
GCGAATCTATTGTGGAAATGGACCACATTGCGAAAATATCAGATCAAACA
AGAGCACTGTGTCACATGCTGCGTCGTATGCTTGACTTTTTTGTTGAACT
TGTTGAAGATCAGAGAGAGGCCAGTTCTGATTCAAGTATTGCAAAGATTC
GTGCAAACAAACCTCTGAACTCCTCTTCGACCGGAATTTCAGTCGAACGT
GTTTTCCATATTATTGATAAGAATGCTCGACATATGAGGTCGGATACGTT
TGATGGAGTGCCAGAAACTCGGTTTCGATATGAAGAACTGGAGCTCGCAA
AGGTGTTCTTAAGGCCGTATTCTTGGTCGATAGTGACTCGCTCGACTGAT
ATGTTCTGGGAACTTGATACCGCGACTATGCCTATTTCGCTAGCTCCTTT
CCGACCTTCTTGCTGA back to topCoding sequence (CDS) from alignment at NODE_1718_length_8829_cov_4.218585:4672..7287- >Gcaud2158.t1 ID=Gcaud2158.t1|Name=Gcaud2158.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2616bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:4672..7287- (Gracilaria caudata M_176_S67 male) ATGGGCGCCAGCGAGTCCACCCTGCTCTCTCCGCACTCTCCTCAAACACG ACGCACTTCATTCAAACATACGGTTTCCCACGTCTTGCAACAGGGAAAAC CTTTGCACCTTCTTCTCAACCCATCATCCCCACTACCACCTGATCCAGAG TCACCTTTTTACAATGCTCTGTTCGATGATTTTATGACCCTACATTTTGC TTCGGCTCGCCCTCTTGCAACACTCGTCGAACTGTCTATTGAGAATCCGA AAGAACAACATGCGATCGCGCTTGTGTGTGCTCTTCGCGCGGCTGTGCAC CGATTGCGCTCCGCACAAGGTTTAGTTCTGCTCGGTGCTTTAGTTTTCTC TCATTCGTCGTTGACCGAGCTCATGCGAATATCAAAATCGGAGGACTCTC TCTGCCTCACTCTCGGAGCCGGTCATGCCGAAAGCTCTTTGCAAGAAGCC GATCGCATTGACCTTGGAAAATCGCTTGTAGCTCGCATTTTGACAGCAGC ACTTGATGTACTTGCCACCCCACAATCGACCGATCTTGCGTCCCATATCA AGCTTTGCGCGGTCGATCTGCTCCTCATAGCGCTTTGCGACGAGCTATAC AGTGTCTCACATGCGCATCAACCTATATCCACGCTACTAGATCGATATCC ACATCCTGCCAAGGTCATACATGTCTTGTTTGACTGCCTCACTGACGCTG CACCAGGCGTTAATGTCGAAACGCATCTGAACATTGGATGTGAACAAATC CCTGCCGTGCAACGCGTGATTCCTGGCAACAGCACAGTTCCGCGCCTGTC GCCTTCTGGTGCGCTGTTTGCCGCAAGTAACAGCGTGGCAAATCTTCAAG TCAGTGTTAATAACGCGCTCTCCGCCATTACATCCAGAATTGCTCTCTCT CCGCTTGGTGCAGGCATTGGAGTCTTTCCAGACCCTGCCGCGGAGGCACA TATTGCTGGCTTTGCATCGAATCATATACAATCCCCAACGGCGAACAATT CTACTACTCTTTCTCCTCGTGCTGCATCGGGGCGAAGGTTAAGCAACTCC ACTAGTTCATCTGTGTCAGGACAAAGTCGAAATGGATTCAAAAAGTTTTT CTCGAGCGCAAGCGATGTGTACCATGAAACAGCTCGAGCGAAATCGTTCA CAGATGACAGCTCTGAGCGCTCACCACGATCGCCTGCTCTCTCGAACAAA TCTCCGCGTGCACCGTTGCATAGAGAGAAAGGGAAACTTCATCTCTTTTC ACCTCCTAAACCGACACATATCGCGGAACAAGCCTTATCACTTCTGGTTA TACTTTGTGGTCCACGGCCATCAGGTCAGTATCGTCAAGCCCTGTTTGAC ATGAATGACTCTGCAAGGCTAGAGGAAGAAGACGAACACTCGTATCCATT CCCAAAGCTTTACGAGACTCTTGGAAAGTGGCTGGCACATCCGAAGGCAG CCCTGCTGGGGTATTACCTAGTGACTGGTAATAAGCGCTTTCGTACTTTT GCTTTGGCGAGGACGGATCCCGACGTACTTCTTCTACCCCTTCTGGCCTC ACTGCGACGGAGATGCGTTGTAGGCGCCATCCCAGCGGACGCGTACATAC CGGCTGCAATAATGCTCACCTTAACTAGTGATAAGGGTTTCTGCGAAGCT ATCGACTCCATCAGCGTTCCTGGCTCCTTTGTTCCGTACTTGGAAGACCC AGCGAGGATTGGTAATGAAAGAATTGTAATGAGCGGAATGATGTTGCTTA TCTGTGCACGGGCACTGCAGCAGAGTTTAGTAATGCGGCGAAAAAGGCCC GATCGTTTTCTGGCGACTCTACTGCTCGCTATAATGGGTAATGTTTCAGG AGATGTGACGAACTTGCATTCTTTAGCTGCCGAAAGACTATTGTCGTTGG TTGAGTTCTTAGGTCGCCGTCGCAGAAAGGCATTGATACTTGAGTATCAG AATGAAAACATGCCTAAGAGACCACCCCGATTGGGTGATAGTCCTAAGGC TCAAGATCACGCTATCTCAAAAGAGAGAGCAATCGACATGGAAAGTATAT TCGAATCAACTATGACATCTTTCGGGAGTCCCAAGCTCTCGGACTTGATT ATGGATTACATTGGTGTTGCTTTCGAGGTTGTGGTTTCTGTTTTGCGTTC TCGAAGTCATGTGTCGGCAAACAGACACTTGGTTTACACGCTGCTACACC GCGAATCTATTGTGGAAATGGACCACATTGCGAAAATATCAGATCAAACA AGAGCACTGTGTCACATGCTGCGTCGTATGCTTGACTTTTTTGTTGAACT TGTTGAAGATCAGAGAGAGGCCAGTTCTGATTCAAGTATTGCAAAGATTC GTGCAAACAAACCTCTGAACTCCTCTTCGACCGGAATTTCAGTCGAACGT GTTTTCCATATTATTGATAAGAATGCTCGACATATGAGGTCGGATACGTT TGATGGAGTGCCAGAAACTCGGTTTCGATATGAAGAACTGGAGCTCGCAA AGGTGTTCTTAAGGCCGTATTCTTGGTCGATAGTGACTCGCTCGACTGAT ATGTTCTGGGAACTTGATACCGCGACTATGCCTATTTCGCTAGCTCCTTT CCGACCTTCTTGCTGA back to top
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