Gcaud2157.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2157.t1
Unique Name	Gcaud2157.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1718_length_8829_cov_4.218585	contig	NODE_1718_length_8829_cov_4.218585:3316..4251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo141633
PFAMs	DUF410
Max annot lvl	4776\|Peronosporales
Evalue	7.82e-27
EggNOG OGs	KOG3024@1\|root,KOG3024@2759\|Eukaryota,3Q87V@4776\|Peronosporales
Description	Protein of unknown function (DUF410)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2157	Gcaud2157	Gracilaria caudata M_176_S67 male	gene	NODE_1718_length_8829_cov_4.218585 3316..4251 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2157.t1.start1	Gcaud2157.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1718_length_8829_cov_4.218585 3316..3318 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2157.t1.CDS1	Gcaud2157.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1718_length_8829_cov_4.218585 3316..4251 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2157.t1.exon1	Gcaud2157.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1718_length_8829_cov_4.218585 3316..4251 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2157.t1.stop1	Gcaud2157.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1718_length_8829_cov_4.218585 4249..4251 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2157.t1	Gcaud2157.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1718_length_8829_cov_4.218585 3316..4251 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1718_length_8829_cov_4.218585:3316..4251+
coding sequence from alignment at NODE_1718_length_8829_cov_4.218585:3316..4251+

mRNA sequence

>Gcaud2157.t1 ID=Gcaud2157.t1|Name=Gcaud2157.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp
MASLNSLQKRYERSIHNEDYYGAEQACIMMHHRLTQGKNQAPDVIDRALN
ILLDASVTLLSKKQAQAGSSLALAAVRHYIEYKKKVTDESVSALRKIADT
YDPTAGNDAEVRREKLRFLKAALAWSARPDCSGFTNGHATLNALTARAAA
ELQNYELSQQLYIYSDAPEESATFLYKYASEHTNTDEHGLALTRVIVRYL
GSENLNDARIVRAKFAQLAGWSSIEDGGDGKSNPPLANFCELLLKVCQLE
TKAAPLYQRICQVYEPELARDESLSPILTKLGTKYFGIQPPQPSGMASMM
SSMLRGMMGAT*

spliced messenger RNA

>Gcaud2157.t1 ID=Gcaud2157.t1|Name=Gcaud2157.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:3316..4251+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCGTTGAACAGTTTGCAGAAACGATACGAAAGAAGCATCCACAA
TGAAGATTACTATGGCGCCGAACAAGCCTGCATCATGATGCATCATCGTC
TCACCCAAGGCAAGAATCAGGCACCTGATGTCATTGACAGAGCTCTCAAC
ATTCTGCTTGACGCCTCTGTGACCTTGCTTTCAAAGAAACAAGCGCAGGC
TGGTTCCTCGCTGGCGCTGGCAGCTGTACGTCACTACATAGAGTACAAGA
AGAAGGTCACAGATGAATCTGTTTCCGCGCTGCGCAAAATCGCCGATACA
TACGATCCAACCGCGGGAAACGATGCTGAAGTGCGTCGCGAGAAGTTGCG
CTTTTTGAAGGCCGCTTTGGCATGGTCAGCGAGACCAGATTGTTCGGGCT
TCACTAACGGTCACGCCACACTCAACGCCCTCACAGCTCGAGCTGCTGCA
GAACTTCAAAACTACGAGCTTTCTCAACAGTTATACATCTATTCAGACGC
GCCAGAGGAAAGTGCCACCTTCTTGTACAAGTACGCGTCGGAGCACACCA
ACACCGATGAGCACGGTTTGGCTCTCACGCGCGTGATCGTCAGATATCTC
GGCTCGGAAAACCTCAACGATGCGCGCATTGTGCGAGCAAAGTTTGCGCA
ACTTGCGGGATGGAGCTCAATAGAGGACGGAGGAGATGGCAAGAGTAATC
CTCCATTGGCAAACTTTTGTGAGCTGCTTCTTAAGGTATGTCAATTAGAA
ACAAAGGCTGCACCTCTGTATCAGAGGATATGTCAGGTATACGAGCCAGA
GCTGGCTAGGGATGAAAGCTTGTCACCCATTCTCACAAAGCTGGGAACCA
AGTACTTTGGAATTCAACCCCCTCAACCAAGTGGCATGGCTAGCATGATG
AGTTCCATGTTGCGCGGCATGATGGGTGCCACCTGA

protein sequence of Gcaud2157.t1

>Gcaud2157.t1 ID=Gcaud2157.t1|Name=Gcaud2157.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
MASLNSLQKRYERSIHNEDYYGAEQACIMMHHRLTQGKNQAPDVIDRALN
ILLDASVTLLSKKQAQAGSSLALAAVRHYIEYKKKVTDESVSALRKIADT
YDPTAGNDAEVRREKLRFLKAALAWSARPDCSGFTNGHATLNALTARAAA
ELQNYELSQQLYIYSDAPEESATFLYKYASEHTNTDEHGLALTRVIVRYL
GSENLNDARIVRAKFAQLAGWSSIEDGGDGKSNPPLANFCELLLKVCQLE
TKAAPLYQRICQVYEPELARDESLSPILTKLGTKYFGIQPPQPSGMASMM
SSMLRGMMGAT*

mRNA from alignment at NODE_1718_length_8829_cov_4.218585:3316..4251+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2157.t1 ID=Gcaud2157.t1|Name=Gcaud2157.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:3316..4251+ (Gracilaria caudata M_176_S67 male)
ATGGCCTCGTTGAACAGTTTGCAGAAACGATACGAAAGAAGCATCCACAA
TGAAGATTACTATGGCGCCGAACAAGCCTGCATCATGATGCATCATCGTC
TCACCCAAGGCAAGAATCAGGCACCTGATGTCATTGACAGAGCTCTCAAC
ATTCTGCTTGACGCCTCTGTGACCTTGCTTTCAAAGAAACAAGCGCAGGC
TGGTTCCTCGCTGGCGCTGGCAGCTGTACGTCACTACATAGAGTACAAGA
AGAAGGTCACAGATGAATCTGTTTCCGCGCTGCGCAAAATCGCCGATACA
TACGATCCAACCGCGGGAAACGATGCTGAAGTGCGTCGCGAGAAGTTGCG
CTTTTTGAAGGCCGCTTTGGCATGGTCAGCGAGACCAGATTGTTCGGGCT
TCACTAACGGTCACGCCACACTCAACGCCCTCACAGCTCGAGCTGCTGCA
GAACTTCAAAACTACGAGCTTTCTCAACAGTTATACATCTATTCAGACGC
GCCAGAGGAAAGTGCCACCTTCTTGTACAAGTACGCGTCGGAGCACACCA
ACACCGATGAGCACGGTTTGGCTCTCACGCGCGTGATCGTCAGATATCTC
GGCTCGGAAAACCTCAACGATGCGCGCATTGTGCGAGCAAAGTTTGCGCA
ACTTGCGGGATGGAGCTCAATAGAGGACGGAGGAGATGGCAAGAGTAATC
CTCCATTGGCAAACTTTTGTGAGCTGCTTCTTAAGGTATGTCAATTAGAA
ACAAAGGCTGCACCTCTGTATCAGAGGATATGTCAGGTATACGAGCCAGA
GCTGGCTAGGGATGAAAGCTTGTCACCCATTCTCACAAAGCTGGGAACCA
AGTACTTTGGAATTCAACCCCCTCAACCAAGTGGCATGGCTAGCATGATG
AGTTCCATGTTGCGCGGCATGATGGGTGCCACCTGA

Coding sequence (CDS) from alignment at NODE_1718_length_8829_cov_4.218585:3316..4251+

>Gcaud2157.t1 ID=Gcaud2157.t1|Name=Gcaud2157.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=936bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:3316..4251+ (Gracilaria caudata M_176_S67 male)
ATGGCCTCGTTGAACAGTTTGCAGAAACGATACGAAAGAAGCATCCACAA
TGAAGATTACTATGGCGCCGAACAAGCCTGCATCATGATGCATCATCGTC
TCACCCAAGGCAAGAATCAGGCACCTGATGTCATTGACAGAGCTCTCAAC
ATTCTGCTTGACGCCTCTGTGACCTTGCTTTCAAAGAAACAAGCGCAGGC
TGGTTCCTCGCTGGCGCTGGCAGCTGTACGTCACTACATAGAGTACAAGA
AGAAGGTCACAGATGAATCTGTTTCCGCGCTGCGCAAAATCGCCGATACA
TACGATCCAACCGCGGGAAACGATGCTGAAGTGCGTCGCGAGAAGTTGCG
CTTTTTGAAGGCCGCTTTGGCATGGTCAGCGAGACCAGATTGTTCGGGCT
TCACTAACGGTCACGCCACACTCAACGCCCTCACAGCTCGAGCTGCTGCA
GAACTTCAAAACTACGAGCTTTCTCAACAGTTATACATCTATTCAGACGC
GCCAGAGGAAAGTGCCACCTTCTTGTACAAGTACGCGTCGGAGCACACCA
ACACCGATGAGCACGGTTTGGCTCTCACGCGCGTGATCGTCAGATATCTC
GGCTCGGAAAACCTCAACGATGCGCGCATTGTGCGAGCAAAGTTTGCGCA
ACTTGCGGGATGGAGCTCAATAGAGGACGGAGGAGATGGCAAGAGTAATC
CTCCATTGGCAAACTTTTGTGAGCTGCTTCTTAAGGTATGTCAATTAGAA
ACAAAGGCTGCACCTCTGTATCAGAGGATATGTCAGGTATACGAGCCAGA
GCTGGCTAGGGATGAAAGCTTGTCACCCATTCTCACAAAGCTGGGAACCA
AGTACTTTGGAATTCAACCCCCTCAACCAAGTGGCATGGCTAGCATGATG
AGTTCCATGTTGCGCGGCATGATGGGTGCCACCTGA