Gcaud2155.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2155.t1
Unique Name	Gcaud2155.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1718_length_8829_cov_4.218585	contig	NODE_1718_length_8829_cov_4.218585:57..1559 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	402777.KB235903_gene2482
PFAMs	GAF,GAF_2,HAMP,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg,dCache_1
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03320
KEGG TC	1.A.11
Evalue	2.08e-15
EggNOG OGs	COG0642@1\|root,COG2199@1\|root,COG2203@1\|root,COG3437@1\|root,COG2203@2\|Bacteria,COG2205@2\|Bacteria,COG3437@2\|Bacteria,COG3706@2\|Bacteria,1G09B@1117\|Cyanobacteria,1H9EM@1150\|Oscillatoriales
Description	Signal Transduction Histidine Kinase
COG category	T
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2155	Gcaud2155	Gracilaria caudata M_176_S67 male	gene	NODE_1718_length_8829_cov_4.218585 57..1559 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2155.t1.start1	Gcaud2155.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1718_length_8829_cov_4.218585 57..59 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2155.t1.CDS1	Gcaud2155.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1718_length_8829_cov_4.218585 57..1559 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2155.t1.exon1	Gcaud2155.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1718_length_8829_cov_4.218585 57..1559 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2155.t1.stop1	Gcaud2155.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1718_length_8829_cov_4.218585 1557..1559 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2155.t1	Gcaud2155.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1718_length_8829_cov_4.218585 57..1559 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1718_length_8829_cov_4.218585:57..1559+
coding sequence from alignment at NODE_1718_length_8829_cov_4.218585:57..1559+

mRNA sequence

>Gcaud2155.t1 ID=Gcaud2155.t1|Name=Gcaud2155.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MDLVPARDDNADTLLNDLATSAAPATLLNDLATSAAPATPDFPPLVGSFL
TPSASAPLPEWPLPTLSRPFRSDSRYEFSLNAADFDTDSVDAHASPSHSR
AFDDDDASTDVRGAATSEDTSLPFDNPPPCTRASAPLSSSPRARAKNESV
LAAPVCAERSLKPVCASNRASCSSPSAPAAAAASTGTAAKQVATAGGAAK
PTKSIKKRSAAASKSSRVSVPSAAASASAVASGATSTGQSGTGLSHTKMC
RDRLNNMFERLKQTLPPAPSGVEVKHKAQVLDYAIFVLKNMVERTTQLEI
DLAVSSNKATMEWIAKLVDRVNSFPDAAEEVMRLFIRRRAWKHAELWTAS
KRACAPHAPPEQSVILRFCNSVCNERNEGLSDMLQKFSKESETYVFRARE
GVPGRVWSSMRPEWVTGLSDGKNFRRAALASRYGLKVCLAVPVTITGKIE
AVMCFYDSKHRAYDTQCLELAMNLAWALGNAVGGKRAKSNVGTSSGISSS
*

spliced messenger RNA

>Gcaud2155.t1 ID=Gcaud2155.t1|Name=Gcaud2155.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:57..1559+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTCGTGCCCGCGCGCGACGACAACGCCGACACGCTGCTCAACGA
CCTCGCCACGTCGGCCGCGCCGGCCACGCTGCTCAACGACCTCGCCACGT
CGGCCGCGCCGGCCACGCCAGACTTCCCGCCGCTGGTCGGCTCCTTTCTC
ACGCCCTCCGCGTCCGCGCCGCTGCCCGAATGGCCGCTTCCCACGCTGTC
GCGCCCCTTTCGCTCCGATTCGCGCTACGAATTCTCGCTCAACGCCGCCG
ACTTTGACACCGACTCGGTGGATGCGCACGCATCGCCGTCGCATTCGCGC
GCGTTTGACGATGATGACGCGTCCACAGATGTGCGAGGCGCCGCCACCAG
CGAGGACACATCCCTTCCGTTTGATAATCCGCCGCCGTGCACGCGCGCTT
CGGCGCCGTTGTCGTCGTCGCCGCGCGCGCGCGCAAAGAACGAGAGTGTG
TTGGCGGCGCCGGTGTGTGCAGAACGCTCGCTCAAGCCTGTGTGCGCGTC
CAATCGCGCGTCGTGTTCATcgccgtctgcgccggcggcggcggctgctt
cgacgggcacggcagcgAAACAGGTTGCTACTGCTGGTGGCGCTGCCAAG
CCCACGAAGAGCATTAAAAAGCGCTCTGCTGCTGCGAGCAAGTCGTCGCG
CGTTTCGGTGCCGTCGGCTGCTGCGTCGGCTTCCGCCGTTGCGTCGGGCG
CTACGTCCACGGGCCAAAGTGGCACAGGGCTGTCGCACACAAAGATGTGT
CGAGATCGACTGAACAACATGTTTGAGCGACTGAAACAGACGTTGCCGCC
GGCGCCGTCGGGCGTGGAAGTAAAGCACAAGGCGCAGGTGCTGGATTACG
CAATCTTTGTTTTGAAGAATATGGTGGAACGCACCACGCAATTGGAGATC
GACCTGGCGGTGAGTAGTAACAAGGCGACGATGGAATGGATTGCCAAACT
GGTGGATAGGGTGAATTCATTCCCGGACGCGGCGGAGGAGGTGATGCGAT
TGTTTATCAGACGTCGCGCGTGGAAACACGCCGAGCTGTGGACGGCGAGC
AAACGCGCGTGTGCGCCGCATGCGCCGCCTGAACAAAGCGTGATTCTGAG
ATTCTGTAACTCGGTGTGCAACGAGCGCAACGAGGGGCTGAGCGACATGC
TGCAAAAGTTCTCCAAGGAATCGGAGACGTACGTGTTTCGCGCGAGGGAA
GGGGTGCCGGGACGGGTGTGGTCGTCGATGCGACCGGAGTGGGTGACGGG
TCTGAGCGACGGGAAGAACTTTCGACGCGCGGCGCTGGCGAGTAGGTATG
GACTGAAGGTGTGTCTGGCGGTGCCGGTGACGATCACGGGCAAGATCGAG
GCGGTGATGTGCTTCTACGACAGCAAGCACCGCGCGTACGACACGCAGTG
CCTGGAGCTGGCGATGAACCTGGCGTGGGCGCTGGGCAACGCGGTGGGCG
GCAAGCGCGCGAAGAGCAACGTGGGCACGTCGTCGGGCATCTCCAGCTCA
TGA

protein sequence of Gcaud2155.t1

>Gcaud2155.t1 ID=Gcaud2155.t1|Name=Gcaud2155.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MDLVPARDDNADTLLNDLATSAAPATLLNDLATSAAPATPDFPPLVGSFL
TPSASAPLPEWPLPTLSRPFRSDSRYEFSLNAADFDTDSVDAHASPSHSR
AFDDDDASTDVRGAATSEDTSLPFDNPPPCTRASAPLSSSPRARAKNESV
LAAPVCAERSLKPVCASNRASCSSPSAPAAAAASTGTAAKQVATAGGAAK
PTKSIKKRSAAASKSSRVSVPSAAASASAVASGATSTGQSGTGLSHTKMC
RDRLNNMFERLKQTLPPAPSGVEVKHKAQVLDYAIFVLKNMVERTTQLEI
DLAVSSNKATMEWIAKLVDRVNSFPDAAEEVMRLFIRRRAWKHAELWTAS
KRACAPHAPPEQSVILRFCNSVCNERNEGLSDMLQKFSKESETYVFRARE
GVPGRVWSSMRPEWVTGLSDGKNFRRAALASRYGLKVCLAVPVTITGKIE
AVMCFYDSKHRAYDTQCLELAMNLAWALGNAVGGKRAKSNVGTSSGISSS
*

mRNA from alignment at NODE_1718_length_8829_cov_4.218585:57..1559+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2155.t1 ID=Gcaud2155.t1|Name=Gcaud2155.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:57..1559+ (Gracilaria caudata M_176_S67 male)
ATGGACCTCGTGCCCGCGCGCGACGACAACGCCGACACGCTGCTCAACGA
CCTCGCCACGTCGGCCGCGCCGGCCACGCTGCTCAACGACCTCGCCACGT
CGGCCGCGCCGGCCACGCCAGACTTCCCGCCGCTGGTCGGCTCCTTTCTC
ACGCCCTCCGCGTCCGCGCCGCTGCCCGAATGGCCGCTTCCCACGCTGTC
GCGCCCCTTTCGCTCCGATTCGCGCTACGAATTCTCGCTCAACGCCGCCG
ACTTTGACACCGACTCGGTGGATGCGCACGCATCGCCGTCGCATTCGCGC
GCGTTTGACGATGATGACGCGTCCACAGATGTGCGAGGCGCCGCCACCAG
CGAGGACACATCCCTTCCGTTTGATAATCCGCCGCCGTGCACGCGCGCTT
CGGCGCCGTTGTCGTCGTCGCCGCGCGCGCGCGCAAAGAACGAGAGTGTG
TTGGCGGCGCCGGTGTGTGCAGAACGCTCGCTCAAGCCTGTGTGCGCGTC
CAATCGCGCGTCGTGTTCATcgccgtctgcgccggcggcggcggctgctt
cgacgggcacggcagcgAAACAGGTTGCTACTGCTGGTGGCGCTGCCAAG
CCCACGAAGAGCATTAAAAAGCGCTCTGCTGCTGCGAGCAAGTCGTCGCG
CGTTTCGGTGCCGTCGGCTGCTGCGTCGGCTTCCGCCGTTGCGTCGGGCG
CTACGTCCACGGGCCAAAGTGGCACAGGGCTGTCGCACACAAAGATGTGT
CGAGATCGACTGAACAACATGTTTGAGCGACTGAAACAGACGTTGCCGCC
GGCGCCGTCGGGCGTGGAAGTAAAGCACAAGGCGCAGGTGCTGGATTACG
CAATCTTTGTTTTGAAGAATATGGTGGAACGCACCACGCAATTGGAGATC
GACCTGGCGGTGAGTAGTAACAAGGCGACGATGGAATGGATTGCCAAACT
GGTGGATAGGGTGAATTCATTCCCGGACGCGGCGGAGGAGGTGATGCGAT
TGTTTATCAGACGTCGCGCGTGGAAACACGCCGAGCTGTGGACGGCGAGC
AAACGCGCGTGTGCGCCGCATGCGCCGCCTGAACAAAGCGTGATTCTGAG
ATTCTGTAACTCGGTGTGCAACGAGCGCAACGAGGGGCTGAGCGACATGC
TGCAAAAGTTCTCCAAGGAATCGGAGACGTACGTGTTTCGCGCGAGGGAA
GGGGTGCCGGGACGGGTGTGGTCGTCGATGCGACCGGAGTGGGTGACGGG
TCTGAGCGACGGGAAGAACTTTCGACGCGCGGCGCTGGCGAGTAGGTATG
GACTGAAGGTGTGTCTGGCGGTGCCGGTGACGATCACGGGCAAGATCGAG
GCGGTGATGTGCTTCTACGACAGCAAGCACCGCGCGTACGACACGCAGTG
CCTGGAGCTGGCGATGAACCTGGCGTGGGCGCTGGGCAACGCGGTGGGCG
GCAAGCGCGCGAAGAGCAACGTGGGCACGTCGTCGGGCATCTCCAGCTCA
TGA

Coding sequence (CDS) from alignment at NODE_1718_length_8829_cov_4.218585:57..1559+

>Gcaud2155.t1 ID=Gcaud2155.t1|Name=Gcaud2155.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_1718_length_8829_cov_4.218585:57..1559+ (Gracilaria caudata M_176_S67 male)
ATGGACCTCGTGCCCGCGCGCGACGACAACGCCGACACGCTGCTCAACGA
CCTCGCCACGTCGGCCGCGCCGGCCACGCTGCTCAACGACCTCGCCACGT
CGGCCGCGCCGGCCACGCCAGACTTCCCGCCGCTGGTCGGCTCCTTTCTC
ACGCCCTCCGCGTCCGCGCCGCTGCCCGAATGGCCGCTTCCCACGCTGTC
GCGCCCCTTTCGCTCCGATTCGCGCTACGAATTCTCGCTCAACGCCGCCG
ACTTTGACACCGACTCGGTGGATGCGCACGCATCGCCGTCGCATTCGCGC
GCGTTTGACGATGATGACGCGTCCACAGATGTGCGAGGCGCCGCCACCAG
CGAGGACACATCCCTTCCGTTTGATAATCCGCCGCCGTGCACGCGCGCTT
CGGCGCCGTTGTCGTCGTCGCCGCGCGCGCGCGCAAAGAACGAGAGTGTG
TTGGCGGCGCCGGTGTGTGCAGAACGCTCGCTCAAGCCTGTGTGCGCGTC
CAATCGCGCGTCGTGTTCATcgccgtctgcgccggcggcggcggctgctt
cgacgggcacggcagcgAAACAGGTTGCTACTGCTGGTGGCGCTGCCAAG
CCCACGAAGAGCATTAAAAAGCGCTCTGCTGCTGCGAGCAAGTCGTCGCG
CGTTTCGGTGCCGTCGGCTGCTGCGTCGGCTTCCGCCGTTGCGTCGGGCG
CTACGTCCACGGGCCAAAGTGGCACAGGGCTGTCGCACACAAAGATGTGT
CGAGATCGACTGAACAACATGTTTGAGCGACTGAAACAGACGTTGCCGCC
GGCGCCGTCGGGCGTGGAAGTAAAGCACAAGGCGCAGGTGCTGGATTACG
CAATCTTTGTTTTGAAGAATATGGTGGAACGCACCACGCAATTGGAGATC
GACCTGGCGGTGAGTAGTAACAAGGCGACGATGGAATGGATTGCCAAACT
GGTGGATAGGGTGAATTCATTCCCGGACGCGGCGGAGGAGGTGATGCGAT
TGTTTATCAGACGTCGCGCGTGGAAACACGCCGAGCTGTGGACGGCGAGC
AAACGCGCGTGTGCGCCGCATGCGCCGCCTGAACAAAGCGTGATTCTGAG
ATTCTGTAACTCGGTGTGCAACGAGCGCAACGAGGGGCTGAGCGACATGC
TGCAAAAGTTCTCCAAGGAATCGGAGACGTACGTGTTTCGCGCGAGGGAA
GGGGTGCCGGGACGGGTGTGGTCGTCGATGCGACCGGAGTGGGTGACGGG
TCTGAGCGACGGGAAGAACTTTCGACGCGCGGCGCTGGCGAGTAGGTATG
GACTGAAGGTGTGTCTGGCGGTGCCGGTGACGATCACGGGCAAGATCGAG
GCGGTGATGTGCTTCTACGACAGCAAGCACCGCGCGTACGACACGCAGTG
CCTGGAGCTGGCGATGAACCTGGCGTGGGCGCTGGGCAACGCGGTGGGCG
GCAAGCGCGCGAAGAGCAACGTGGGCACGTCGTCGGGCATCTCCAGCTCA
TGA