Gcaud2150.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2150.t1
Unique Name	Gcaud2150.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	400

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_774_length_18304_cov_4.574150	contig	NODE_774_length_18304_cov_4.574150:4624..5823 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	269800.Tfu_1553
PFAMs	Phage_int_SAM_1,Phage_integrase
Max annot lvl	201174\|Actinobacteria
Evalue	9.5e-05
EggNOG OGs	COG4974@1\|root,COG4974@2\|Bacteria,2IBWD@201174\|Actinobacteria,4ENB9@85012\|Streptosporangiales
Description	Phage integrase family
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2150	Gcaud2150	Gracilaria caudata M_176_S67 male	gene	NODE_774_length_18304_cov_4.574150 4624..5823 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2150.t1.stop1	Gcaud2150.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_774_length_18304_cov_4.574150 4624..4626 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2150.t1.CDS1	Gcaud2150.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_774_length_18304_cov_4.574150 4624..5823 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2150.t1.exon1	Gcaud2150.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_774_length_18304_cov_4.574150 4624..5823 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2150.t1.start1	Gcaud2150.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_774_length_18304_cov_4.574150 5821..5823 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2150.t1	Gcaud2150.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_774_length_18304_cov_4.574150 4624..5823 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_774_length_18304_cov_4.574150:4624..5823-
coding sequence from alignment at NODE_774_length_18304_cov_4.574150:4624..5823-

mRNA sequence

>Gcaud2150.t1 ID=Gcaud2150.t1|Name=Gcaud2150.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=400bp
MAPAGMVLGGTSDGVEGYRAPQHIVRSPGCSENNQPELESITAGDEHMRI
KVLAASRLRHGQTSSTAIDRSARLLKDFGWSTRTGRSRDTQWRTYLDFCA
TDNRDPLPIAEAHLAARIGWITEEREASRRNISHSSLRQYILAIRQRQST
VLGIEVPPFPFIAHLLRAYQRWEEARHPQPTVRCGLPASAMQQIWELGMS
SCSIRTVRDAAMCLFAYSFNGLRESSVCSLRATACESCDLQLTCRLHVVK
GQQASTVSLVRFTATLSPSPLDLWARWNLIRSSNSRFFALADEPREWVPQ
SLSAALRRYLSALNITPSRGGKYSSHSLRIGTHTEQVLLGIPLEVRLSRF
GWGPNSAVMAQTYFDRTLMSSSASVWIFGAGSGLPAFQSKPGTASTPTS*

spliced messenger RNA

>Gcaud2150.t1 ID=Gcaud2150.t1|Name=Gcaud2150.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:4624..5823- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCGGCAGGAATGGTACTGGGGGGCACTTCGGATGGCGTCGAAGG
TTACAGAGCTCCCCAACACATCGTACGAAGTCCGGGATGCTCAGAGAACA
ATCAACCCGAGTTGGAGAGCATTACTGCTGGAGATGAACATATGAGGATA
AAAGTCCTTGCCGCTTCGCGGCTTCGTCACGGGCAGACCTCCAGCACCGC
CATTGACCGCTCTGCTCGTCTTCTGAAAGATTTTGGCTGGAGCACTCGTA
CAGGACGCTCACGCGACACACAGTGGCGTACTTATCTGGACTTCTGCGCT
ACAGATAATCGAGATCCTCTCCCTATTGCAGAAGCGCATTTAGCAGCTCG
TATTGGATGGATCACCGAAGAAAGAGAGGCCAGTCGTCGAAATATAAGCC
ACTCTTCACTGCGTCAGTACATCTTGGCTATCCGACAGCGACAATCTACG
GTGTTGGGAATCGAGGTTCCGCCATTCCCATTCATAGCGCATCTGCTTCG
CGCCTATCAACGCTGGGAAGAGGCTAGGCATCCCCAACCCACTGTACGTT
GTGGATTGCCGGCCTCTGCGATGCAGCAAATCTGGGAACTCGGCATGTCT
TCTTGCTCAATTCGTACGGTTCGTGACGCGGCGATGTGCTTGTTTGCTTA
CAGTTTTAACGGTTTGCGCGAAAGCTCCGTCTGTTCGCTTCGTGCCACTG
CTTGCGAGTCTTGCGACCTGCAACTAACCTGTCGCCTTCATGTCGTCAAA
GGACAGCAGGCGAGTACAGTCTCTCTTGTACGGTTTACTGCCACCCTTTC
GCCGTCGCCCTTGGATCTTTGGGCTCGATGGAACCTGATTAGGTCTTCGA
ATTCACGCTTTTTTGCGCTTGCTGACGAACCTCGCGAGTGGGTCCCCCAA
TCTCTATCTGCTGCGCTACGACGATATCTGTCTGCGCTAAATATAACTCC
TTCTCGCGGTGGCAAGTACTCTTCTCACAGCTTGCGTATCGGCACGCATA
CGGAGCAGGTCTTGCTTGGCATTCCTTTGGAGGTCCGGCTTTCGCGCTTT
GGTTGGGGCCCCAACAGTGCTGTGATGGCCCAAACTTACTTTGACCGAAC
CTTAATGTCCTCCTCCGCGTCGGTCTGGATATTCGGTGCTGGTTCTGGTT
TGCCTGCTTTCCAGTCTAAACCCGGCACCGCTTCCACCCCAACGAGTTGA

protein sequence of Gcaud2150.t1

>Gcaud2150.t1 ID=Gcaud2150.t1|Name=Gcaud2150.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=400bp
MAPAGMVLGGTSDGVEGYRAPQHIVRSPGCSENNQPELESITAGDEHMRI
KVLAASRLRHGQTSSTAIDRSARLLKDFGWSTRTGRSRDTQWRTYLDFCA
TDNRDPLPIAEAHLAARIGWITEEREASRRNISHSSLRQYILAIRQRQST
VLGIEVPPFPFIAHLLRAYQRWEEARHPQPTVRCGLPASAMQQIWELGMS
SCSIRTVRDAAMCLFAYSFNGLRESSVCSLRATACESCDLQLTCRLHVVK
GQQASTVSLVRFTATLSPSPLDLWARWNLIRSSNSRFFALADEPREWVPQ
SLSAALRRYLSALNITPSRGGKYSSHSLRIGTHTEQVLLGIPLEVRLSRF
GWGPNSAVMAQTYFDRTLMSSSASVWIFGAGSGLPAFQSKPGTASTPTS*

mRNA from alignment at NODE_774_length_18304_cov_4.574150:4624..5823-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2150.t1 ID=Gcaud2150.t1|Name=Gcaud2150.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:4624..5823- (Gracilaria caudata M_176_S67 male)
ATGGCCCCGGCAGGAATGGTACTGGGGGGCACTTCGGATGGCGTCGAAGG
TTACAGAGCTCCCCAACACATCGTACGAAGTCCGGGATGCTCAGAGAACA
ATCAACCCGAGTTGGAGAGCATTACTGCTGGAGATGAACATATGAGGATA
AAAGTCCTTGCCGCTTCGCGGCTTCGTCACGGGCAGACCTCCAGCACCGC
CATTGACCGCTCTGCTCGTCTTCTGAAAGATTTTGGCTGGAGCACTCGTA
CAGGACGCTCACGCGACACACAGTGGCGTACTTATCTGGACTTCTGCGCT
ACAGATAATCGAGATCCTCTCCCTATTGCAGAAGCGCATTTAGCAGCTCG
TATTGGATGGATCACCGAAGAAAGAGAGGCCAGTCGTCGAAATATAAGCC
ACTCTTCACTGCGTCAGTACATCTTGGCTATCCGACAGCGACAATCTACG
GTGTTGGGAATCGAGGTTCCGCCATTCCCATTCATAGCGCATCTGCTTCG
CGCCTATCAACGCTGGGAAGAGGCTAGGCATCCCCAACCCACTGTACGTT
GTGGATTGCCGGCCTCTGCGATGCAGCAAATCTGGGAACTCGGCATGTCT
TCTTGCTCAATTCGTACGGTTCGTGACGCGGCGATGTGCTTGTTTGCTTA
CAGTTTTAACGGTTTGCGCGAAAGCTCCGTCTGTTCGCTTCGTGCCACTG
CTTGCGAGTCTTGCGACCTGCAACTAACCTGTCGCCTTCATGTCGTCAAA
GGACAGCAGGCGAGTACAGTCTCTCTTGTACGGTTTACTGCCACCCTTTC
GCCGTCGCCCTTGGATCTTTGGGCTCGATGGAACCTGATTAGGTCTTCGA
ATTCACGCTTTTTTGCGCTTGCTGACGAACCTCGCGAGTGGGTCCCCCAA
TCTCTATCTGCTGCGCTACGACGATATCTGTCTGCGCTAAATATAACTCC
TTCTCGCGGTGGCAAGTACTCTTCTCACAGCTTGCGTATCGGCACGCATA
CGGAGCAGGTCTTGCTTGGCATTCCTTTGGAGGTCCGGCTTTCGCGCTTT
GGTTGGGGCCCCAACAGTGCTGTGATGGCCCAAACTTACTTTGACCGAAC
CTTAATGTCCTCCTCCGCGTCGGTCTGGATATTCGGTGCTGGTTCTGGTT
TGCCTGCTTTCCAGTCTAAACCCGGCACCGCTTCCACCCCAACGAGTTGA

Coding sequence (CDS) from alignment at NODE_774_length_18304_cov_4.574150:4624..5823-

>Gcaud2150.t1 ID=Gcaud2150.t1|Name=Gcaud2150.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1200bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:4624..5823- (Gracilaria caudata M_176_S67 male)
ATGGCCCCGGCAGGAATGGTACTGGGGGGCACTTCGGATGGCGTCGAAGG
TTACAGAGCTCCCCAACACATCGTACGAAGTCCGGGATGCTCAGAGAACA
ATCAACCCGAGTTGGAGAGCATTACTGCTGGAGATGAACATATGAGGATA
AAAGTCCTTGCCGCTTCGCGGCTTCGTCACGGGCAGACCTCCAGCACCGC
CATTGACCGCTCTGCTCGTCTTCTGAAAGATTTTGGCTGGAGCACTCGTA
CAGGACGCTCACGCGACACACAGTGGCGTACTTATCTGGACTTCTGCGCT
ACAGATAATCGAGATCCTCTCCCTATTGCAGAAGCGCATTTAGCAGCTCG
TATTGGATGGATCACCGAAGAAAGAGAGGCCAGTCGTCGAAATATAAGCC
ACTCTTCACTGCGTCAGTACATCTTGGCTATCCGACAGCGACAATCTACG
GTGTTGGGAATCGAGGTTCCGCCATTCCCATTCATAGCGCATCTGCTTCG
CGCCTATCAACGCTGGGAAGAGGCTAGGCATCCCCAACCCACTGTACGTT
GTGGATTGCCGGCCTCTGCGATGCAGCAAATCTGGGAACTCGGCATGTCT
TCTTGCTCAATTCGTACGGTTCGTGACGCGGCGATGTGCTTGTTTGCTTA
CAGTTTTAACGGTTTGCGCGAAAGCTCCGTCTGTTCGCTTCGTGCCACTG
CTTGCGAGTCTTGCGACCTGCAACTAACCTGTCGCCTTCATGTCGTCAAA
GGACAGCAGGCGAGTACAGTCTCTCTTGTACGGTTTACTGCCACCCTTTC
GCCGTCGCCCTTGGATCTTTGGGCTCGATGGAACCTGATTAGGTCTTCGA
ATTCACGCTTTTTTGCGCTTGCTGACGAACCTCGCGAGTGGGTCCCCCAA
TCTCTATCTGCTGCGCTACGACGATATCTGTCTGCGCTAAATATAACTCC
TTCTCGCGGTGGCAAGTACTCTTCTCACAGCTTGCGTATCGGCACGCATA
CGGAGCAGGTCTTGCTTGGCATTCCTTTGGAGGTCCGGCTTTCGCGCTTT
GGTTGGGGCCCCAACAGTGCTGTGATGGCCCAAACTTACTTTGACCGAAC
CTTAATGTCCTCCTCCGCGTCGGTCTGGATATTCGGTGCTGGTTCTGGTT
TGCCTGCTTTCCAGTCTAAACCCGGCACCGCTTCCACCCCAACGAGTTGA