Gcaud2143.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2143.t1
Unique Name	Gcaud2143.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	566

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:36898..38595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2143	Gcaud2143	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 36898..38595 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2143.t1.start1	Gcaud2143.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 36898..36900 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2143.t1.CDS1	Gcaud2143.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 36898..38595 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2143.t1.exon1	Gcaud2143.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 36898..38595 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2143.t1.stop1	Gcaud2143.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 38593..38595 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2143.t1	Gcaud2143.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 36898..38595 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:36898..38595+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:36898..38595+

mRNA sequence

>Gcaud2143.t1 ID=Gcaud2143.t1|Name=Gcaud2143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=566bp
MSPSPYLLSLSDDTLTAHDDALCVVQLPEHFDASVAAFASTADALAIASS
PSWSAGRVTVFTTSDQVQLHTAASSITKLALSAHTNFVAVAYADNTIQLL
NVPSHQSSEFSVSSRVLSLSFDSQTTILSVCTAKAILLLSLPTLRQISEI
TPTSATRSFPRATTLRTCLTSAAISPLYPLLASSDDTGCVTVYDISAPST
PHTCARFTSALRTPATTMCFSSTGVLAVAGFDKHIRLYDSRLKTLLFSIA
IAAPATALSFREHLIAVATTNSTISLIEAHVDENSFVYNARYETPESQTT
ALLLCPPCVPILNTKASVEEHSPKRQVDPLSQTFSDVESFLSRLPPLPPD
KQAKQTHVSKRLHQRRSLPIISEQSTILDHDEMRAAQLPAHLSASFLTDE
QASPPSSAGTASPVSHSVPRKDSQDRQDVMDNLDVRHCSPESSPLMRSVS
GQRVSAERRRSEEFFNFGAPVLRRAGVGRVSEAGEENEAMNMFRSILRQE
MDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDETVTQLEKEVRR
LKADNVRLRKKYGLK*

spliced messenger RNA

>Gcaud2143.t1 ID=Gcaud2143.t1|Name=Gcaud2143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:36898..38595+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGTCTCCCTACCTTCTGTCTCTCTCCGACGACACGCTCACAGC
TCATGATGACGCGCTGTGTGTCGTTCAGCTCCCCGAGCACTTTGACGCCT
CTGTCGCCGCGTTTGCCTCCACCGCCGATGCGCTCGCTATCGCCTCTTCG
CCTTCGTGGAGCGCTGGTCGTGTCACCGTCTTCACCACATCCGACCAAGT
TCAACTTCACACCGCTGCATCCTCCATCACCAAGCTCGCGCTATCCGCCC
ACACAAACTTCGTAGCCGTCGCGTACGCAGATAACACTATACAACTTCTC
AACGTGCCCTCACATCAAAGCAGCGAATTTTCGGTTTCATCGCGCGTGCT
TTCTCTCTCCTTCGATTCACAAACTACCATCTTATCCGTCTGCACCGCCA
AAGCAATCCTATTGCTGTCGCTTCCCACTTTGAGACAAATCTCAGAAATA
ACGCCCACATCAGCCACGCGTTCGTTCCCGCGCGCCACCACCCTTCGAAC
ATGTTTAACAAGTGCCGCCATCTCTCCGCTCTACCCTCTTCTGGCAAGCA
GTGACGATACTGGTTGCGTCACTGTGTACGATATAAGCGCTCCATCAACA
CCGCACACTTGTGCCAGATTCACTAGCGCGCTGCGAACACCAGCTACCAC
CATGTGCTTCTCCTCCACCGGAGTGCTTGCAGTTGCCGGCTTCGACAAGC
ACATTCGTCTGTATGACTCGCGCCTCAAGACGCTACTGTTTTCGATCGCC
ATTGCAGCGCCTGCCACCGCGCTCTCCTTTCGCGAACACTTGATTGCAGT
CGCCACCACCAACTCCACCATCTCGCTCATCGAAGCACATGTAGATGAAA
ATTCATTCGTGTACAATGCGCGCTACGAAACGCCAGAATCTCAGACAACA
GCGCTGTTATTATGCCCGCCGTGCGTCCCAATTTTAAATACCAAAGCATC
GGTGGAAGAGCACTCGCCCAAACGACAAGTCGATCCGTTGTCACAAACGT
TTTCAGATGTGGAAAGTTTTTTATCGCGACTTCCACCACTCCCACCAGAT
AAACAAGCGAAGCAAACGCATGTCTCAAAACGATTGCATCAACGCCGTTC
GTTACCCATTATTTCGGAACAATCGACAATCCTGGATCACGATGAAATGA
GAGCAGCACAATTACCGGCTCACCTTAGCGCTAGCTTCCTCACAGATGAG
CAGGCATCTCCTCCGTCGTCGGCAGGGACAGCCTCGCCTGTTTCACATTC
TGTACCACGAAAAGATTCACAGGATAGACAAGATGTCATGGACAACCTTG
ATGTGAGGCATTGTTCTCCAGAAAGTTCGCCGTTGATGAGATCTGTCTCT
GGACAGAGAGTTTCAGCGGAAAGAAGAAGATCGGAAGAGTTTTTCAACTT
TGGAGCACCTGTGTTAAGAAGAGCTGGCGTTGGAAGGGTCTCGGAGGCGG
GAGAGGAAAATGAGGCGATGAACATGTTTAGAAGCATATTGCGACAGGAG
ATGGATGTGATACGGACCGACTTGCACAACGATATTGTTAGCATTCATTC
CGAACTTGTATTGTTGGCTTCTGCGCAATCGAGGGAACTGAAAGAGGTTG
TGAAAGAACGAGATGAAACAGTAACGCAACTGGAGAAGGAGGTGCGTCGG
TTAAAGGCGGACAACGTGAGATTGAGAAAGAAATATGGTCTCAAATAG

protein sequence of Gcaud2143.t1

>Gcaud2143.t1 ID=Gcaud2143.t1|Name=Gcaud2143.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MSPSPYLLSLSDDTLTAHDDALCVVQLPEHFDASVAAFASTADALAIASS
PSWSAGRVTVFTTSDQVQLHTAASSITKLALSAHTNFVAVAYADNTIQLL
NVPSHQSSEFSVSSRVLSLSFDSQTTILSVCTAKAILLLSLPTLRQISEI
TPTSATRSFPRATTLRTCLTSAAISPLYPLLASSDDTGCVTVYDISAPST
PHTCARFTSALRTPATTMCFSSTGVLAVAGFDKHIRLYDSRLKTLLFSIA
IAAPATALSFREHLIAVATTNSTISLIEAHVDENSFVYNARYETPESQTT
ALLLCPPCVPILNTKASVEEHSPKRQVDPLSQTFSDVESFLSRLPPLPPD
KQAKQTHVSKRLHQRRSLPIISEQSTILDHDEMRAAQLPAHLSASFLTDE
QASPPSSAGTASPVSHSVPRKDSQDRQDVMDNLDVRHCSPESSPLMRSVS
GQRVSAERRRSEEFFNFGAPVLRRAGVGRVSEAGEENEAMNMFRSILRQE
MDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDETVTQLEKEVRR
LKADNVRLRKKYGLK*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:36898..38595+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2143.t1 ID=Gcaud2143.t1|Name=Gcaud2143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:36898..38595+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCGTCTCCCTACCTTCTGTCTCTCTCCGACGACACGCTCACAGC
TCATGATGACGCGCTGTGTGTCGTTCAGCTCCCCGAGCACTTTGACGCCT
CTGTCGCCGCGTTTGCCTCCACCGCCGATGCGCTCGCTATCGCCTCTTCG
CCTTCGTGGAGCGCTGGTCGTGTCACCGTCTTCACCACATCCGACCAAGT
TCAACTTCACACCGCTGCATCCTCCATCACCAAGCTCGCGCTATCCGCCC
ACACAAACTTCGTAGCCGTCGCGTACGCAGATAACACTATACAACTTCTC
AACGTGCCCTCACATCAAAGCAGCGAATTTTCGGTTTCATCGCGCGTGCT
TTCTCTCTCCTTCGATTCACAAACTACCATCTTATCCGTCTGCACCGCCA
AAGCAATCCTATTGCTGTCGCTTCCCACTTTGAGACAAATCTCAGAAATA
ACGCCCACATCAGCCACGCGTTCGTTCCCGCGCGCCACCACCCTTCGAAC
ATGTTTAACAAGTGCCGCCATCTCTCCGCTCTACCCTCTTCTGGCAAGCA
GTGACGATACTGGTTGCGTCACTGTGTACGATATAAGCGCTCCATCAACA
CCGCACACTTGTGCCAGATTCACTAGCGCGCTGCGAACACCAGCTACCAC
CATGTGCTTCTCCTCCACCGGAGTGCTTGCAGTTGCCGGCTTCGACAAGC
ACATTCGTCTGTATGACTCGCGCCTCAAGACGCTACTGTTTTCGATCGCC
ATTGCAGCGCCTGCCACCGCGCTCTCCTTTCGCGAACACTTGATTGCAGT
CGCCACCACCAACTCCACCATCTCGCTCATCGAAGCACATGTAGATGAAA
ATTCATTCGTGTACAATGCGCGCTACGAAACGCCAGAATCTCAGACAACA
GCGCTGTTATTATGCCCGCCGTGCGTCCCAATTTTAAATACCAAAGCATC
GGTGGAAGAGCACTCGCCCAAACGACAAGTCGATCCGTTGTCACAAACGT
TTTCAGATGTGGAAAGTTTTTTATCGCGACTTCCACCACTCCCACCAGAT
AAACAAGCGAAGCAAACGCATGTCTCAAAACGATTGCATCAACGCCGTTC
GTTACCCATTATTTCGGAACAATCGACAATCCTGGATCACGATGAAATGA
GAGCAGCACAATTACCGGCTCACCTTAGCGCTAGCTTCCTCACAGATGAG
CAGGCATCTCCTCCGTCGTCGGCAGGGACAGCCTCGCCTGTTTCACATTC
TGTACCACGAAAAGATTCACAGGATAGACAAGATGTCATGGACAACCTTG
ATGTGAGGCATTGTTCTCCAGAAAGTTCGCCGTTGATGAGATCTGTCTCT
GGACAGAGAGTTTCAGCGGAAAGAAGAAGATCGGAAGAGTTTTTCAACTT
TGGAGCACCTGTGTTAAGAAGAGCTGGCGTTGGAAGGGTCTCGGAGGCGG
GAGAGGAAAATGAGGCGATGAACATGTTTAGAAGCATATTGCGACAGGAG
ATGGATGTGATACGGACCGACTTGCACAACGATATTGTTAGCATTCATTC
CGAACTTGTATTGTTGGCTTCTGCGCAATCGAGGGAACTGAAAGAGGTTG
TGAAAGAACGAGATGAAACAGTAACGCAACTGGAGAAGGAGGTGCGTCGG
TTAAAGGCGGACAACGTGAGATTGAGAAAGAAATATGGTCTCAAATAG

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:36898..38595+

>Gcaud2143.t1 ID=Gcaud2143.t1|Name=Gcaud2143.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1698bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:36898..38595+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCGTCTCCCTACCTTCTGTCTCTCTCCGACGACACGCTCACAGC
TCATGATGACGCGCTGTGTGTCGTTCAGCTCCCCGAGCACTTTGACGCCT
CTGTCGCCGCGTTTGCCTCCACCGCCGATGCGCTCGCTATCGCCTCTTCG
CCTTCGTGGAGCGCTGGTCGTGTCACCGTCTTCACCACATCCGACCAAGT
TCAACTTCACACCGCTGCATCCTCCATCACCAAGCTCGCGCTATCCGCCC
ACACAAACTTCGTAGCCGTCGCGTACGCAGATAACACTATACAACTTCTC
AACGTGCCCTCACATCAAAGCAGCGAATTTTCGGTTTCATCGCGCGTGCT
TTCTCTCTCCTTCGATTCACAAACTACCATCTTATCCGTCTGCACCGCCA
AAGCAATCCTATTGCTGTCGCTTCCCACTTTGAGACAAATCTCAGAAATA
ACGCCCACATCAGCCACGCGTTCGTTCCCGCGCGCCACCACCCTTCGAAC
ATGTTTAACAAGTGCCGCCATCTCTCCGCTCTACCCTCTTCTGGCAAGCA
GTGACGATACTGGTTGCGTCACTGTGTACGATATAAGCGCTCCATCAACA
CCGCACACTTGTGCCAGATTCACTAGCGCGCTGCGAACACCAGCTACCAC
CATGTGCTTCTCCTCCACCGGAGTGCTTGCAGTTGCCGGCTTCGACAAGC
ACATTCGTCTGTATGACTCGCGCCTCAAGACGCTACTGTTTTCGATCGCC
ATTGCAGCGCCTGCCACCGCGCTCTCCTTTCGCGAACACTTGATTGCAGT
CGCCACCACCAACTCCACCATCTCGCTCATCGAAGCACATGTAGATGAAA
ATTCATTCGTGTACAATGCGCGCTACGAAACGCCAGAATCTCAGACAACA
GCGCTGTTATTATGCCCGCCGTGCGTCCCAATTTTAAATACCAAAGCATC
GGTGGAAGAGCACTCGCCCAAACGACAAGTCGATCCGTTGTCACAAACGT
TTTCAGATGTGGAAAGTTTTTTATCGCGACTTCCACCACTCCCACCAGAT
AAACAAGCGAAGCAAACGCATGTCTCAAAACGATTGCATCAACGCCGTTC
GTTACCCATTATTTCGGAACAATCGACAATCCTGGATCACGATGAAATGA
GAGCAGCACAATTACCGGCTCACCTTAGCGCTAGCTTCCTCACAGATGAG
CAGGCATCTCCTCCGTCGTCGGCAGGGACAGCCTCGCCTGTTTCACATTC
TGTACCACGAAAAGATTCACAGGATAGACAAGATGTCATGGACAACCTTG
ATGTGAGGCATTGTTCTCCAGAAAGTTCGCCGTTGATGAGATCTGTCTCT
GGACAGAGAGTTTCAGCGGAAAGAAGAAGATCGGAAGAGTTTTTCAACTT
TGGAGCACCTGTGTTAAGAAGAGCTGGCGTTGGAAGGGTCTCGGAGGCGG
GAGAGGAAAATGAGGCGATGAACATGTTTAGAAGCATATTGCGACAGGAG
ATGGATGTGATACGGACCGACTTGCACAACGATATTGTTAGCATTCATTC
CGAACTTGTATTGTTGGCTTCTGCGCAATCGAGGGAACTGAAAGAGGTTG
TGAAAGAACGAGATGAAACAGTAACGCAACTGGAGAAGGAGGTGCGTCGG
TTAAAGGCGGACAACGTGAGATTGAGAAAGAAATATGGTCTCAAATAG