Gcaud2139.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2139.t1
Unique Name	Gcaud2139.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:23238..24185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1185876.BN8_04530
PFAMs	adh_short
Max annot lvl	976\|Bacteroidetes
Evalue	2.74e-51
EggNOG OGs	COG4221@1\|root,COG4221@2\|Bacteria,4PKGY@976\|Bacteroidetes,47JKE@768503\|Cytophagia
Description	PFAM Short-chain dehydrogenase reductase SDR
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2139	Gcaud2139	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 23238..24185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2139.t1.start1	Gcaud2139.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 23238..23240 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2139.t1.CDS1	Gcaud2139.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 23238..24185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2139.t1.exon1	Gcaud2139.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 23238..24185 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2139.t1.stop1	Gcaud2139.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 24183..24185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2139.t1	Gcaud2139.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 23238..24185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:23238..24185+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:23238..24185+

mRNA sequence

>Gcaud2139.t1 ID=Gcaud2139.t1|Name=Gcaud2139.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=316bp
MPFVGLLGISCIAAGAWLAHRVFRFLTGDCDLQTLSARINPRTFRGKVVW
ITGASSGIGAALAVHLAKHGALLILTSRNEEKLNELADQLPCPRDFVFVL
PLDLSSKLSLVEDVASSVSAIFGRLDYVFNNAGISTRSSASDMEMESVQK
VMQINFVSAVALTRACLRALREAPGGGGTIVNTASIATAVHTPLRAPYCA
SKAAMTAYFDCLGLEEPSIRVVNVHPGSVRTPVAHNALVAGGKVFGRSDP
NIQAGLDPGRVADRMLAAVSSGVSTSWIAKPKELMAIRMATWLPGLWSFI
ASKRAQSYRRRIEDS*

spliced messenger RNA

>Gcaud2139.t1 ID=Gcaud2139.t1|Name=Gcaud2139.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:23238..24185+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTTTGTCGGACTTTTGGGCATTTCGTGCATTGCCGCTGGTGCGTG
GCTTGCGCATCGTGTATTCCGTTTTCTCACCGGCGATTGTGATCTACAAA
CTTTGTCTGCGCGGATCAACCCTCGGACGTTTCGCGGCAAAGTTGTGTGG
ATAACCGGCGCCAGCTCTGGTATTGGTGCTGCATTGGCCGTTCACCTTGC
GAAGCACGGCGCCCTTCTCATTCTTACCTCCCGAAATGAGGAAAAGCTCA
ACGAGCTCGCCGATCAACTTCCGTGTCCGAGAGATTTTGTGTTCGTTTTA
CCCTTGGACTTGTCGTCTAAACTCTCACTTGTAGAGGATGTTGCAAGCAG
CGTGTCCGCCATATTCGGCCGTCTTGACTATGTGTTTAACAATGCGGGCA
TTTCAACTCGATCTAGTGCTTCTGACATGGAAATGGAGAGCGTTCAAAAA
GTGATGCAAATCAACTTTGTATCAGCTGTGGCTTTGACCAGAGCATGTTT
GCGGGCACTACGTGAGGCACCAGGTGGTGGTGGTACCATCGTCAACACTG
CTTCCATCGCAACTGCCGTTCATACTCCTTTACGTGCGCCGTATTGCGCA
TCAAAGGCTGCAATGACTGCGTATTTTGACTGCCTTGGACTGGAGGAGCC
AAGTATACGTGTTGTCAATGTACATCCCGGCTCCGTTCGTACCCCTGTCG
CGCATAATGCCCTGGTCGCGGGCGGCAAGGTGTTTGGTAGGTCTGACCCG
AACATTCAAGCTGGTCTTGATCCAGGACGGGTTGCAGATAGGATGCTTGC
TGCCGTTTCATCTGGTGTTTCAACATCATGGATCGCCAAACCCAAAGAGC
TTATGGCCATACGAATGGCCACTTGGTTGCCAGGTTTATGGTCTTTCATT
GCTTCCAAAAGAGCTCAGTCATATCGAAGAAGAATTGAAGACTCATGA

protein sequence of Gcaud2139.t1

>Gcaud2139.t1 ID=Gcaud2139.t1|Name=Gcaud2139.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=316bp
MPFVGLLGISCIAAGAWLAHRVFRFLTGDCDLQTLSARINPRTFRGKVVW
ITGASSGIGAALAVHLAKHGALLILTSRNEEKLNELADQLPCPRDFVFVL
PLDLSSKLSLVEDVASSVSAIFGRLDYVFNNAGISTRSSASDMEMESVQK
VMQINFVSAVALTRACLRALREAPGGGGTIVNTASIATAVHTPLRAPYCA
SKAAMTAYFDCLGLEEPSIRVVNVHPGSVRTPVAHNALVAGGKVFGRSDP
NIQAGLDPGRVADRMLAAVSSGVSTSWIAKPKELMAIRMATWLPGLWSFI
ASKRAQSYRRRIEDS*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:23238..24185+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2139.t1 ID=Gcaud2139.t1|Name=Gcaud2139.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:23238..24185+ (Gracilaria caudata M_176_S67 male)
ATGCCCTTTGTCGGACTTTTGGGCATTTCGTGCATTGCCGCTGGTGCGTG
GCTTGCGCATCGTGTATTCCGTTTTCTCACCGGCGATTGTGATCTACAAA
CTTTGTCTGCGCGGATCAACCCTCGGACGTTTCGCGGCAAAGTTGTGTGG
ATAACCGGCGCCAGCTCTGGTATTGGTGCTGCATTGGCCGTTCACCTTGC
GAAGCACGGCGCCCTTCTCATTCTTACCTCCCGAAATGAGGAAAAGCTCA
ACGAGCTCGCCGATCAACTTCCGTGTCCGAGAGATTTTGTGTTCGTTTTA
CCCTTGGACTTGTCGTCTAAACTCTCACTTGTAGAGGATGTTGCAAGCAG
CGTGTCCGCCATATTCGGCCGTCTTGACTATGTGTTTAACAATGCGGGCA
TTTCAACTCGATCTAGTGCTTCTGACATGGAAATGGAGAGCGTTCAAAAA
GTGATGCAAATCAACTTTGTATCAGCTGTGGCTTTGACCAGAGCATGTTT
GCGGGCACTACGTGAGGCACCAGGTGGTGGTGGTACCATCGTCAACACTG
CTTCCATCGCAACTGCCGTTCATACTCCTTTACGTGCGCCGTATTGCGCA
TCAAAGGCTGCAATGACTGCGTATTTTGACTGCCTTGGACTGGAGGAGCC
AAGTATACGTGTTGTCAATGTACATCCCGGCTCCGTTCGTACCCCTGTCG
CGCATAATGCCCTGGTCGCGGGCGGCAAGGTGTTTGGTAGGTCTGACCCG
AACATTCAAGCTGGTCTTGATCCAGGACGGGTTGCAGATAGGATGCTTGC
TGCCGTTTCATCTGGTGTTTCAACATCATGGATCGCCAAACCCAAAGAGC
TTATGGCCATACGAATGGCCACTTGGTTGCCAGGTTTATGGTCTTTCATT
GCTTCCAAAAGAGCTCAGTCATATCGAAGAAGAATTGAAGACTCATGA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:23238..24185+

>Gcaud2139.t1 ID=Gcaud2139.t1|Name=Gcaud2139.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=948bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:23238..24185+ (Gracilaria caudata M_176_S67 male)
ATGCCCTTTGTCGGACTTTTGGGCATTTCGTGCATTGCCGCTGGTGCGTG
GCTTGCGCATCGTGTATTCCGTTTTCTCACCGGCGATTGTGATCTACAAA
CTTTGTCTGCGCGGATCAACCCTCGGACGTTTCGCGGCAAAGTTGTGTGG
ATAACCGGCGCCAGCTCTGGTATTGGTGCTGCATTGGCCGTTCACCTTGC
GAAGCACGGCGCCCTTCTCATTCTTACCTCCCGAAATGAGGAAAAGCTCA
ACGAGCTCGCCGATCAACTTCCGTGTCCGAGAGATTTTGTGTTCGTTTTA
CCCTTGGACTTGTCGTCTAAACTCTCACTTGTAGAGGATGTTGCAAGCAG
CGTGTCCGCCATATTCGGCCGTCTTGACTATGTGTTTAACAATGCGGGCA
TTTCAACTCGATCTAGTGCTTCTGACATGGAAATGGAGAGCGTTCAAAAA
GTGATGCAAATCAACTTTGTATCAGCTGTGGCTTTGACCAGAGCATGTTT
GCGGGCACTACGTGAGGCACCAGGTGGTGGTGGTACCATCGTCAACACTG
CTTCCATCGCAACTGCCGTTCATACTCCTTTACGTGCGCCGTATTGCGCA
TCAAAGGCTGCAATGACTGCGTATTTTGACTGCCTTGGACTGGAGGAGCC
AAGTATACGTGTTGTCAATGTACATCCCGGCTCCGTTCGTACCCCTGTCG
CGCATAATGCCCTGGTCGCGGGCGGCAAGGTGTTTGGTAGGTCTGACCCG
AACATTCAAGCTGGTCTTGATCCAGGACGGGTTGCAGATAGGATGCTTGC
TGCCGTTTCATCTGGTGTTTCAACATCATGGATCGCCAAACCCAAAGAGC
TTATGGCCATACGAATGGCCACTTGGTTGCCAGGTTTATGGTCTTTCATT
GCTTCCAAAAGAGCTCAGTCATATCGAAGAAGAATTGAAGACTCATGA