Gcaud2137.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2137.t1
Unique Name	Gcaud2137.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	593

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:16979..18757 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708129.1
Preferred name	CPN60A
PFAMs	Cpn60_TCP1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04077
KEGG Pathway	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006457,GO:0006458,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0016020,GO:0016043,GO:0022414,GO:0022626,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044183,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048046,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051082,GO:0061077,GO:0061458,GO:0071840,GO:1990904
Evalue	1.53e-242
EggNOG OGs	COG0459@1\|root,KOG0356@2759\|Eukaryota
Description	protein refolding
COG category	O
BRITE	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2137	Gcaud2137	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 16979..18757 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2137.t1.stop1	Gcaud2137.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 16979..16981 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2137.t1.CDS1	Gcaud2137.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 16979..18757 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2137.t1.exon1	Gcaud2137.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 16979..18757 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2137.t1.start1	Gcaud2137.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 18755..18757 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2137.t1	Gcaud2137.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 16979..18757 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:16979..18757-
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:16979..18757-

mRNA sequence

>Gcaud2137.t1 ID=Gcaud2137.t1|Name=Gcaud2137.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=593bp
MNIPSAFVSALPLASSSFASSTQTVSQRRRHAVRVSVPRSAPLVSMAAKE
IAFGEQSRKRLIEGVDAVANAVKVTLGPRGRNVVLGRGSYSTPLSVNDGV
TVAKEISLEDPMANTGARLLQEVASKTDSKAGDGTTTSTVLCQEIVHQGI
KAVGSGRNPIALKRGIDKTVKFLVQRLQDSAIPSKGIDDIRAVATISAGN
DEEIGEIISTAYEKIGETGTTSVEESQSLGNSVEFTEGMELDRGFISPYF
VKNQERQVAEMVRPRVLITDQKISAVKDLVNLLENFVKTKEPLVIVCDDL
TGEALSTMVVNKMRGVLDVVAIKSPGFGDRRKQYLEDIAIVTGGSFICSD
LGMTLEDVKPEDLGSAERIIVGKESTTIISTGEFEEAVRDRIAQINRDLE
TTDSQFDTEKLEERRARLGGGVARILIGAATETELKDKKLRCEDALNATK
AAMEQGILPGGGAALAHLSVEVPKFAESLPNEDEKAGAFIVKAAITSPLK
QICANAGVEGEVVLEKVLDMEFNGGYNAATGVYENLMDSGVMDPTKVTCW
SLENSASVAGLILTTECLVVEIPEKKPIQGDGMGDLPGEQYY*

spliced messenger RNA

>Gcaud2137.t1 ID=Gcaud2137.t1|Name=Gcaud2137.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:16979..18757- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCCCGTCCGCCTTTGTATCGGCGCTGCCGCTCGCGTCCTCGTC
GTTTGCGTCGTCGACGCAGACCGTGTCCCAACGTCGTCGTCATGCCGTGC
GTGTGTCTGTGCCGCGCTCGGCGCCCCTCGTGTCCATGGCGGCCAAGGAG
ATTGCCTTTGGAGAGCAGTCGCGCAAGAGATTGATCGAAGGCGTTGATGC
TGTGGCAAACGCTGTCAAGGTCACCTTGGGACCCAGAGGGCGAAACGTCG
TCTTGGGTCGCGGAAGCTACTCCACCCCGCTTAGTGTCAACGACGGTGTT
ACCGTCGCAAAGGAGATTTCTTTGGAGGATCCTATGGCCAACACTGGCGC
GCGCTTGTTGCAGGAGGTCGCTTCCAAGACTGATTCTAAGGCTGGCGATG
GGACCACCACTTCTACCGTTCTGTGTCAGGAAATCGTGCACCAGGGAATC
AAAGCTGTTGGCAGTGGACGTAATCCTATCGCGTTGAAGAGGGGTATTGA
TAAGACCGTCAAGTTTTTGGTCCAGAGGCTTCAGGATAGTGCCATCCCCA
GCAAGGGCATTGACGATATTCGCGCCGTTGCCACCATTTCTGCCGGCAAT
GATGAAGAAATCGGTGAGATCATTTCCACTGCCTACGAGAAGATTGGTGA
AACCGGCACCACTTCTGTGGAAGAGTCTCAAAGTCTTGGCAACTCCGTCG
AGTTTACGGAAGGTATGGAGCTCGACAGAGGCTTCATCTCGCCCTACTTT
GTCAAGAACCAAGAGCGCCAGGTGGCTGAGATGGTCCGCCCACGAGTGCT
TATAACTGACCAGAAGATCAGCGCCGTAAAAGACCTGGTCAACCTGCTTG
AAAACTTTGTCAAAACTAAGGAACCCCTCGTCATTGTCTGCGACGATTTG
ACTGGTGAGGCCCTGTCCACAATGGTTGTCAACAAAATGAGAGGCGTCTT
AGATGTTGTGGCCATCAAGTCACCCGGCTTTGGTGATCGCAGAAAGCAAT
ATCTTGAGGACATTGCCATCGTTACCGGCGGATCTTTCATTTGCTCTGAC
CTTGGCATGACCCTTGAGGACGTAAAGCCGGAAGATCTCGGCTCTGCTGA
GCGTATCATCGTTGGAAAGGAGAGCACTACCATTATCTCCACCGGCGAGT
TTGAGGAAGCTGTCAGGGACCGTATTGCCCAGATCAATCGCGATTTGGAG
ACAACTGATTCCCAGTTTGACACTGAGAAGCTGGAGGAACGCCGTGCAAG
ACTCGGCGGCGGTGTCGCTCGAATTCTAATCGGAGCTGCCACTGAAACAG
AACTGAAGGATAAGAAGCTTCGTTGTGAGGATGCTCTTAACGCCACCAAG
GCTGCAATGGAGCAGGGAATTCTACCAGGTGGTGGTGCGGCCCTGGCTCA
TTTGTCAGTGGAGGTACCGAAGTTTGCGGAGTCTTTGCCAAATGAGGACG
AGAAGGCTGGTGCCTTCATAGTCAAGGCTGCCATTACCTCTCCTTTGAAG
CAAATCTGCGCCAACGCCGGTGTCGAGGGTGAAGTAGTGCTGGAAAAGGT
GTTGGATATGGAGTTCAACGGTGGATACAACGCAGCCACTGGAGTGTACG
AGAACCTAATGGACTCAGGTGTGATGGACCCGACAAAGGTCACATGCTGG
TCTCTCGAGAACTCTGCAAGTGTGGCAGGCCTCATTTTGACCACAGAGTG
CCTGGTTGTGGAGATTCCAGAGAAGAAGCCGATACAGGGTGACGGTATGG
GTGATCTTCCAGGAGAGCAATATTACTAA

protein sequence of Gcaud2137.t1

>Gcaud2137.t1 ID=Gcaud2137.t1|Name=Gcaud2137.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=593bp
MNIPSAFVSALPLASSSFASSTQTVSQRRRHAVRVSVPRSAPLVSMAAKE
IAFGEQSRKRLIEGVDAVANAVKVTLGPRGRNVVLGRGSYSTPLSVNDGV
TVAKEISLEDPMANTGARLLQEVASKTDSKAGDGTTTSTVLCQEIVHQGI
KAVGSGRNPIALKRGIDKTVKFLVQRLQDSAIPSKGIDDIRAVATISAGN
DEEIGEIISTAYEKIGETGTTSVEESQSLGNSVEFTEGMELDRGFISPYF
VKNQERQVAEMVRPRVLITDQKISAVKDLVNLLENFVKTKEPLVIVCDDL
TGEALSTMVVNKMRGVLDVVAIKSPGFGDRRKQYLEDIAIVTGGSFICSD
LGMTLEDVKPEDLGSAERIIVGKESTTIISTGEFEEAVRDRIAQINRDLE
TTDSQFDTEKLEERRARLGGGVARILIGAATETELKDKKLRCEDALNATK
AAMEQGILPGGGAALAHLSVEVPKFAESLPNEDEKAGAFIVKAAITSPLK
QICANAGVEGEVVLEKVLDMEFNGGYNAATGVYENLMDSGVMDPTKVTCW
SLENSASVAGLILTTECLVVEIPEKKPIQGDGMGDLPGEQYY*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:16979..18757-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2137.t1 ID=Gcaud2137.t1|Name=Gcaud2137.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:16979..18757- (Gracilaria caudata M_176_S67 male)
ATGAACATCCCGTCCGCCTTTGTATCGGCGCTGCCGCTCGCGTCCTCGTC
GTTTGCGTCGTCGACGCAGACCGTGTCCCAACGTCGTCGTCATGCCGTGC
GTGTGTCTGTGCCGCGCTCGGCGCCCCTCGTGTCCATGGCGGCCAAGGAG
ATTGCCTTTGGAGAGCAGTCGCGCAAGAGATTGATCGAAGGCGTTGATGC
TGTGGCAAACGCTGTCAAGGTCACCTTGGGACCCAGAGGGCGAAACGTCG
TCTTGGGTCGCGGAAGCTACTCCACCCCGCTTAGTGTCAACGACGGTGTT
ACCGTCGCAAAGGAGATTTCTTTGGAGGATCCTATGGCCAACACTGGCGC
GCGCTTGTTGCAGGAGGTCGCTTCCAAGACTGATTCTAAGGCTGGCGATG
GGACCACCACTTCTACCGTTCTGTGTCAGGAAATCGTGCACCAGGGAATC
AAAGCTGTTGGCAGTGGACGTAATCCTATCGCGTTGAAGAGGGGTATTGA
TAAGACCGTCAAGTTTTTGGTCCAGAGGCTTCAGGATAGTGCCATCCCCA
GCAAGGGCATTGACGATATTCGCGCCGTTGCCACCATTTCTGCCGGCAAT
GATGAAGAAATCGGTGAGATCATTTCCACTGCCTACGAGAAGATTGGTGA
AACCGGCACCACTTCTGTGGAAGAGTCTCAAAGTCTTGGCAACTCCGTCG
AGTTTACGGAAGGTATGGAGCTCGACAGAGGCTTCATCTCGCCCTACTTT
GTCAAGAACCAAGAGCGCCAGGTGGCTGAGATGGTCCGCCCACGAGTGCT
TATAACTGACCAGAAGATCAGCGCCGTAAAAGACCTGGTCAACCTGCTTG
AAAACTTTGTCAAAACTAAGGAACCCCTCGTCATTGTCTGCGACGATTTG
ACTGGTGAGGCCCTGTCCACAATGGTTGTCAACAAAATGAGAGGCGTCTT
AGATGTTGTGGCCATCAAGTCACCCGGCTTTGGTGATCGCAGAAAGCAAT
ATCTTGAGGACATTGCCATCGTTACCGGCGGATCTTTCATTTGCTCTGAC
CTTGGCATGACCCTTGAGGACGTAAAGCCGGAAGATCTCGGCTCTGCTGA
GCGTATCATCGTTGGAAAGGAGAGCACTACCATTATCTCCACCGGCGAGT
TTGAGGAAGCTGTCAGGGACCGTATTGCCCAGATCAATCGCGATTTGGAG
ACAACTGATTCCCAGTTTGACACTGAGAAGCTGGAGGAACGCCGTGCAAG
ACTCGGCGGCGGTGTCGCTCGAATTCTAATCGGAGCTGCCACTGAAACAG
AACTGAAGGATAAGAAGCTTCGTTGTGAGGATGCTCTTAACGCCACCAAG
GCTGCAATGGAGCAGGGAATTCTACCAGGTGGTGGTGCGGCCCTGGCTCA
TTTGTCAGTGGAGGTACCGAAGTTTGCGGAGTCTTTGCCAAATGAGGACG
AGAAGGCTGGTGCCTTCATAGTCAAGGCTGCCATTACCTCTCCTTTGAAG
CAAATCTGCGCCAACGCCGGTGTCGAGGGTGAAGTAGTGCTGGAAAAGGT
GTTGGATATGGAGTTCAACGGTGGATACAACGCAGCCACTGGAGTGTACG
AGAACCTAATGGACTCAGGTGTGATGGACCCGACAAAGGTCACATGCTGG
TCTCTCGAGAACTCTGCAAGTGTGGCAGGCCTCATTTTGACCACAGAGTG
CCTGGTTGTGGAGATTCCAGAGAAGAAGCCGATACAGGGTGACGGTATGG
GTGATCTTCCAGGAGAGCAATATTACTAA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:16979..18757-

>Gcaud2137.t1 ID=Gcaud2137.t1|Name=Gcaud2137.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1779bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:16979..18757- (Gracilaria caudata M_176_S67 male)
ATGAACATCCCGTCCGCCTTTGTATCGGCGCTGCCGCTCGCGTCCTCGTC
GTTTGCGTCGTCGACGCAGACCGTGTCCCAACGTCGTCGTCATGCCGTGC
GTGTGTCTGTGCCGCGCTCGGCGCCCCTCGTGTCCATGGCGGCCAAGGAG
ATTGCCTTTGGAGAGCAGTCGCGCAAGAGATTGATCGAAGGCGTTGATGC
TGTGGCAAACGCTGTCAAGGTCACCTTGGGACCCAGAGGGCGAAACGTCG
TCTTGGGTCGCGGAAGCTACTCCACCCCGCTTAGTGTCAACGACGGTGTT
ACCGTCGCAAAGGAGATTTCTTTGGAGGATCCTATGGCCAACACTGGCGC
GCGCTTGTTGCAGGAGGTCGCTTCCAAGACTGATTCTAAGGCTGGCGATG
GGACCACCACTTCTACCGTTCTGTGTCAGGAAATCGTGCACCAGGGAATC
AAAGCTGTTGGCAGTGGACGTAATCCTATCGCGTTGAAGAGGGGTATTGA
TAAGACCGTCAAGTTTTTGGTCCAGAGGCTTCAGGATAGTGCCATCCCCA
GCAAGGGCATTGACGATATTCGCGCCGTTGCCACCATTTCTGCCGGCAAT
GATGAAGAAATCGGTGAGATCATTTCCACTGCCTACGAGAAGATTGGTGA
AACCGGCACCACTTCTGTGGAAGAGTCTCAAAGTCTTGGCAACTCCGTCG
AGTTTACGGAAGGTATGGAGCTCGACAGAGGCTTCATCTCGCCCTACTTT
GTCAAGAACCAAGAGCGCCAGGTGGCTGAGATGGTCCGCCCACGAGTGCT
TATAACTGACCAGAAGATCAGCGCCGTAAAAGACCTGGTCAACCTGCTTG
AAAACTTTGTCAAAACTAAGGAACCCCTCGTCATTGTCTGCGACGATTTG
ACTGGTGAGGCCCTGTCCACAATGGTTGTCAACAAAATGAGAGGCGTCTT
AGATGTTGTGGCCATCAAGTCACCCGGCTTTGGTGATCGCAGAAAGCAAT
ATCTTGAGGACATTGCCATCGTTACCGGCGGATCTTTCATTTGCTCTGAC
CTTGGCATGACCCTTGAGGACGTAAAGCCGGAAGATCTCGGCTCTGCTGA
GCGTATCATCGTTGGAAAGGAGAGCACTACCATTATCTCCACCGGCGAGT
TTGAGGAAGCTGTCAGGGACCGTATTGCCCAGATCAATCGCGATTTGGAG
ACAACTGATTCCCAGTTTGACACTGAGAAGCTGGAGGAACGCCGTGCAAG
ACTCGGCGGCGGTGTCGCTCGAATTCTAATCGGAGCTGCCACTGAAACAG
AACTGAAGGATAAGAAGCTTCGTTGTGAGGATGCTCTTAACGCCACCAAG
GCTGCAATGGAGCAGGGAATTCTACCAGGTGGTGGTGCGGCCCTGGCTCA
TTTGTCAGTGGAGGTACCGAAGTTTGCGGAGTCTTTGCCAAATGAGGACG
AGAAGGCTGGTGCCTTCATAGTCAAGGCTGCCATTACCTCTCCTTTGAAG
CAAATCTGCGCCAACGCCGGTGTCGAGGGTGAAGTAGTGCTGGAAAAGGT
GTTGGATATGGAGTTCAACGGTGGATACAACGCAGCCACTGGAGTGTACG
AGAACCTAATGGACTCAGGTGTGATGGACCCGACAAAGGTCACATGCTGG
TCTCTCGAGAACTCTGCAAGTGTGGCAGGCCTCATTTTGACCACAGAGTG
CCTGGTTGTGGAGATTCCAGAGAAGAAGCCGATACAGGGTGACGGTATGG
GTGATCTTCCAGGAGAGCAATATTACTAA