Gcaud2136.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2136.t1
Unique Name	Gcaud2136.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:14755..16386 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	144197.XP_008288622.1
Preferred name	SH3KBP1
PFAMs	SH3_9
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K12470
KEGG Pathway	ko04144,map04144
GOs	GO:0000902,GO:0000904,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005912,GO:0005924,GO:0005925,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007154,GO:0007267,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008360,GO:0009605,GO:0009653,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012506,GO:0016020,GO:0016043,GO:0016477,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030054,GO:0030055,GO:0030139,GO:0030154,GO:0030182,GO:0030659,GO:0031090,GO:0031175,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0040011,GO:0042058,GO:0042059,GO:0042221,GO:0042330,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044389,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051674,GO:0061024,GO:0061564,GO:0065007,GO:0065008,GO:0070161,GO:0071840,GO:0071944,GO:0097458,GO:0097485,GO:0097708,GO:0120025,GO:0120036,GO:0120039,GO:1901184,GO:1901185
Evalue	2.63e-08
EggNOG OGs	KOG4348@1\|root,KOG4348@2759\|Eukaryota,38DPF@33154\|Opisthokonta,3BAC3@33208\|Metazoa,3D1ER@33213\|Bilateria,482WN@7711\|Chordata,48Z0Q@7742\|Vertebrata,49RU4@7898\|Actinopterygii
Description	SH3-domain kinase binding protein 1
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2136	Gcaud2136	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 14755..16386 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2136.t1.start1	Gcaud2136.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 14755..14757 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2136.t1.CDS1	Gcaud2136.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 14755..16386 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2136.t1.exon1	Gcaud2136.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 14755..16386 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2136.t1.stop1	Gcaud2136.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 16384..16386 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2136.t1	Gcaud2136.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 14755..16386 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:14755..16386+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:14755..16386+

mRNA sequence

>Gcaud2136.t1 ID=Gcaud2136.t1|Name=Gcaud2136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=544bp
MCGGSSRFSLVSNNPASNAMNVAMPPEHDSVVFNDKSRKFDEADAAFRAL
VEALDAYKAAVLHAAECGVAVARAMDSFFTQPDHKQKQLVAKFLDSQLAI
RAKWISEAEKTYDAEVLAPIKSRLDEIPKVRDTIRARASYKADMEKRQKK
LQTERKRDTSRLRDKQRRLKEITNQYTMFHNRVIQSFNYIERNMGTFVTG
PLRALVTVMAEVSKSTVHSMDEVVKLVAETPPITTDMSPAPPLASAAEDV
GGIIGEEVWDGDYVFDDDTELEAEYEEDKNGSEHNDPVVALARASSHLPP
RGRVHSADGVSKNSASLPVDQLGFEFSAATSPRRGLSTSSAPADMSRAFS
PATSLPAFSSNTNGSHRDVSVGPSSVSGRISQNGPDTFLPPSSVASSTST
ENVAHDAMRLSPRSAPSGRRRRQGEGKESVDTVGSLEGGTRTEVIRRVVA
KYDFRPQESNEIELRTGDVIEVTAMTDGGWWMGQIGRSCGYFPRNYTREL
TAEEELAYMNDRRRRTRRGHQRHDSGDSRRSGQTASQSSVHLL*

spliced messenger RNA

>Gcaud2136.t1 ID=Gcaud2136.t1|Name=Gcaud2136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:14755..16386+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGCGGGTCGTCGCGCTTTTCTCTCGTTAGCAACAACCCCGCCAG
CAACGCCATGAACGTCGCTATGCCTCCCGAGCACGACTCCGTCGTCTTCA
ACGACAAATCGCGCAAGTTTGACGAGGCCGACGCCGCCTTCCGCGCCCTG
GTCGAAGCGCTCGACGCCTACAAGGCCGCCGTGTTGCACGCCGCGGAATG
TGGTGTCGCGGTCGCTAGGGCCATGGACTCCTTTTTCACCCAACCCGACC
ACAAACAGAAGCAGCTTGTCGCCAAGTTTCTGGATTCGCAGCTCGCCATT
CGCGCCAAGTGGATCTCGGAGGCGGAGAAGACATATGATGCTGAGGTACT
AGCGCCCATCAAGAGCAGGCTCGATGAGATTCCGAAGGTGCGAGACACTA
TTCGCGCGCGCGCCAGCTACAAGGCTGATATGGAGAAGCGCCAGAAAAAG
CTTCAAACCGAGCGCAAGAGAGATACCTCTCGCCTCAGAGATAAGCAACG
TCGACTCAAAGAAATCACCAATCAATACACCATGTTCCACAACCGTGTCA
TACAAAGCTTTAACTACATCGAACGAAACATGGGCACTTTTGTAACCGGT
CCATTGCGCGCTCTCGTCACTGTTATGGCCGAAGTCTCCAAATCTACTGT
ACATTCAATGGATGAGGTTGTAAAACTCGTCGCAGAGACACCGCCCATAA
CAACCGACATGTCCCCTGCACCTCCGCTCGCTTCTGCTGCGGAGGATGTC
GGAGGGATAATTGGCGAGGAGGTTTGGGACGGTGATTATGTCTTTGATGA
TGATACAGAGCTTGAGGCTGAATACGAGGAAGATAAGAATGGGTCTGAGC
ATAATGACCCCGTGGTTGCCCTTGCCCGCGCAAGTTCTCATCTCCCGCCC
CGTGGCAGAGTGCACAGTGCGGATGGTGTTTCCAAGAACTCCGCCTCTTT
ACCTGTCGATCAGTTGGGTTTCGAATTTTCAGCGGCAACCAGTCCTCGAC
GCGGCCTCTCAACTTCCTCTGCTCCGGCAGATATGTCGCGCGCCTTCTCT
CCCGCCACTTCGCTCCCAGCATTCTCGTCAAACACTAATGGATCCCACAG
GGACGTAAGCGTTGGTCCCAGTTCTGTGTCCGGTCGTATCTCACAGAACG
GCCCAGATACATTTTTGCCCCCATCTTCTGTTGCAAGTAGTACGTCCACT
GAAAATGTTGCCCATGATGCTATGCGGCTCTCTCCAAGAAGTGCTCCATC
GGGTCGCCGTCGAAGACAAGGTGAAGGAAAAGAAAGCGTCGATACGGTCG
GCTCGTTAGAAGGAGGAACACGCACCGAAGTCATCAGACGAGTGGTCGCG
AAGTACGATTTCAGGCCACAGGAATCTAACGAAATTGAACTGCGAACTGG
AGATGTCATAGAGGTAACTGCCATGACGGATGGAGGCTGGTGGATGGGAC
AAATAGGGCGCTCATGTGGCTATTTCCCTCGAAACTATACAAGAGAACTT
ACAGCTGAAGAAGAACTTGCCTACATGAACGACAGGAGAAGGCGAACGCG
GCGAGGTCATCAAAGGCATGATTCCGGAGATTCTCGGCGGTCCGGCCAAA
CCGCATCACAGTCATCTGTTCATCTTCTGTGA

protein sequence of Gcaud2136.t1

>Gcaud2136.t1 ID=Gcaud2136.t1|Name=Gcaud2136.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=544bp
MCGGSSRFSLVSNNPASNAMNVAMPPEHDSVVFNDKSRKFDEADAAFRAL
VEALDAYKAAVLHAAECGVAVARAMDSFFTQPDHKQKQLVAKFLDSQLAI
RAKWISEAEKTYDAEVLAPIKSRLDEIPKVRDTIRARASYKADMEKRQKK
LQTERKRDTSRLRDKQRRLKEITNQYTMFHNRVIQSFNYIERNMGTFVTG
PLRALVTVMAEVSKSTVHSMDEVVKLVAETPPITTDMSPAPPLASAAEDV
GGIIGEEVWDGDYVFDDDTELEAEYEEDKNGSEHNDPVVALARASSHLPP
RGRVHSADGVSKNSASLPVDQLGFEFSAATSPRRGLSTSSAPADMSRAFS
PATSLPAFSSNTNGSHRDVSVGPSSVSGRISQNGPDTFLPPSSVASSTST
ENVAHDAMRLSPRSAPSGRRRRQGEGKESVDTVGSLEGGTRTEVIRRVVA
KYDFRPQESNEIELRTGDVIEVTAMTDGGWWMGQIGRSCGYFPRNYTREL
TAEEELAYMNDRRRRTRRGHQRHDSGDSRRSGQTASQSSVHLL*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:14755..16386+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2136.t1 ID=Gcaud2136.t1|Name=Gcaud2136.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:14755..16386+ (Gracilaria caudata M_176_S67 male)
ATGTGCGGCGGGTCGTCGCGCTTTTCTCTCGTTAGCAACAACCCCGCCAG
CAACGCCATGAACGTCGCTATGCCTCCCGAGCACGACTCCGTCGTCTTCA
ACGACAAATCGCGCAAGTTTGACGAGGCCGACGCCGCCTTCCGCGCCCTG
GTCGAAGCGCTCGACGCCTACAAGGCCGCCGTGTTGCACGCCGCGGAATG
TGGTGTCGCGGTCGCTAGGGCCATGGACTCCTTTTTCACCCAACCCGACC
ACAAACAGAAGCAGCTTGTCGCCAAGTTTCTGGATTCGCAGCTCGCCATT
CGCGCCAAGTGGATCTCGGAGGCGGAGAAGACATATGATGCTGAGGTACT
AGCGCCCATCAAGAGCAGGCTCGATGAGATTCCGAAGGTGCGAGACACTA
TTCGCGCGCGCGCCAGCTACAAGGCTGATATGGAGAAGCGCCAGAAAAAG
CTTCAAACCGAGCGCAAGAGAGATACCTCTCGCCTCAGAGATAAGCAACG
TCGACTCAAAGAAATCACCAATCAATACACCATGTTCCACAACCGTGTCA
TACAAAGCTTTAACTACATCGAACGAAACATGGGCACTTTTGTAACCGGT
CCATTGCGCGCTCTCGTCACTGTTATGGCCGAAGTCTCCAAATCTACTGT
ACATTCAATGGATGAGGTTGTAAAACTCGTCGCAGAGACACCGCCCATAA
CAACCGACATGTCCCCTGCACCTCCGCTCGCTTCTGCTGCGGAGGATGTC
GGAGGGATAATTGGCGAGGAGGTTTGGGACGGTGATTATGTCTTTGATGA
TGATACAGAGCTTGAGGCTGAATACGAGGAAGATAAGAATGGGTCTGAGC
ATAATGACCCCGTGGTTGCCCTTGCCCGCGCAAGTTCTCATCTCCCGCCC
CGTGGCAGAGTGCACAGTGCGGATGGTGTTTCCAAGAACTCCGCCTCTTT
ACCTGTCGATCAGTTGGGTTTCGAATTTTCAGCGGCAACCAGTCCTCGAC
GCGGCCTCTCAACTTCCTCTGCTCCGGCAGATATGTCGCGCGCCTTCTCT
CCCGCCACTTCGCTCCCAGCATTCTCGTCAAACACTAATGGATCCCACAG
GGACGTAAGCGTTGGTCCCAGTTCTGTGTCCGGTCGTATCTCACAGAACG
GCCCAGATACATTTTTGCCCCCATCTTCTGTTGCAAGTAGTACGTCCACT
GAAAATGTTGCCCATGATGCTATGCGGCTCTCTCCAAGAAGTGCTCCATC
GGGTCGCCGTCGAAGACAAGGTGAAGGAAAAGAAAGCGTCGATACGGTCG
GCTCGTTAGAAGGAGGAACACGCACCGAAGTCATCAGACGAGTGGTCGCG
AAGTACGATTTCAGGCCACAGGAATCTAACGAAATTGAACTGCGAACTGG
AGATGTCATAGAGGTAACTGCCATGACGGATGGAGGCTGGTGGATGGGAC
AAATAGGGCGCTCATGTGGCTATTTCCCTCGAAACTATACAAGAGAACTT
ACAGCTGAAGAAGAACTTGCCTACATGAACGACAGGAGAAGGCGAACGCG
GCGAGGTCATCAAAGGCATGATTCCGGAGATTCTCGGCGGTCCGGCCAAA
CCGCATCACAGTCATCTGTTCATCTTCTGTGA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:14755..16386+

>Gcaud2136.t1 ID=Gcaud2136.t1|Name=Gcaud2136.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1632bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:14755..16386+ (Gracilaria caudata M_176_S67 male)
ATGTGCGGCGGGTCGTCGCGCTTTTCTCTCGTTAGCAACAACCCCGCCAG
CAACGCCATGAACGTCGCTATGCCTCCCGAGCACGACTCCGTCGTCTTCA
ACGACAAATCGCGCAAGTTTGACGAGGCCGACGCCGCCTTCCGCGCCCTG
GTCGAAGCGCTCGACGCCTACAAGGCCGCCGTGTTGCACGCCGCGGAATG
TGGTGTCGCGGTCGCTAGGGCCATGGACTCCTTTTTCACCCAACCCGACC
ACAAACAGAAGCAGCTTGTCGCCAAGTTTCTGGATTCGCAGCTCGCCATT
CGCGCCAAGTGGATCTCGGAGGCGGAGAAGACATATGATGCTGAGGTACT
AGCGCCCATCAAGAGCAGGCTCGATGAGATTCCGAAGGTGCGAGACACTA
TTCGCGCGCGCGCCAGCTACAAGGCTGATATGGAGAAGCGCCAGAAAAAG
CTTCAAACCGAGCGCAAGAGAGATACCTCTCGCCTCAGAGATAAGCAACG
TCGACTCAAAGAAATCACCAATCAATACACCATGTTCCACAACCGTGTCA
TACAAAGCTTTAACTACATCGAACGAAACATGGGCACTTTTGTAACCGGT
CCATTGCGCGCTCTCGTCACTGTTATGGCCGAAGTCTCCAAATCTACTGT
ACATTCAATGGATGAGGTTGTAAAACTCGTCGCAGAGACACCGCCCATAA
CAACCGACATGTCCCCTGCACCTCCGCTCGCTTCTGCTGCGGAGGATGTC
GGAGGGATAATTGGCGAGGAGGTTTGGGACGGTGATTATGTCTTTGATGA
TGATACAGAGCTTGAGGCTGAATACGAGGAAGATAAGAATGGGTCTGAGC
ATAATGACCCCGTGGTTGCCCTTGCCCGCGCAAGTTCTCATCTCCCGCCC
CGTGGCAGAGTGCACAGTGCGGATGGTGTTTCCAAGAACTCCGCCTCTTT
ACCTGTCGATCAGTTGGGTTTCGAATTTTCAGCGGCAACCAGTCCTCGAC
GCGGCCTCTCAACTTCCTCTGCTCCGGCAGATATGTCGCGCGCCTTCTCT
CCCGCCACTTCGCTCCCAGCATTCTCGTCAAACACTAATGGATCCCACAG
GGACGTAAGCGTTGGTCCCAGTTCTGTGTCCGGTCGTATCTCACAGAACG
GCCCAGATACATTTTTGCCCCCATCTTCTGTTGCAAGTAGTACGTCCACT
GAAAATGTTGCCCATGATGCTATGCGGCTCTCTCCAAGAAGTGCTCCATC
GGGTCGCCGTCGAAGACAAGGTGAAGGAAAAGAAAGCGTCGATACGGTCG
GCTCGTTAGAAGGAGGAACACGCACCGAAGTCATCAGACGAGTGGTCGCG
AAGTACGATTTCAGGCCACAGGAATCTAACGAAATTGAACTGCGAACTGG
AGATGTCATAGAGGTAACTGCCATGACGGATGGAGGCTGGTGGATGGGAC
AAATAGGGCGCTCATGTGGCTATTTCCCTCGAAACTATACAAGAGAACTT
ACAGCTGAAGAAGAACTTGCCTACATGAACGACAGGAGAAGGCGAACGCG
GCGAGGTCATCAAAGGCATGATTCCGGAGATTCTCGGCGGTCCGGCCAAA
CCGCATCACAGTCATCTGTTCATCTTCTGTGA