Gcaud2133.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2133.t1
Unique Name	Gcaud2133.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:10505..11563 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2JIS9
PFAMs	Hydrolase_6,Hydrolase_like
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0016787,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0061024,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Evalue	1.04e-65
EggNOG OGs	COG0647@1\|root,KOG1618@2759\|Eukaryota,39SVY@33154\|Opisthokonta,3NWHC@4751\|Fungi,1GUQS@112252\|Fungi incertae sedis
Description	Mortierella verticillata NRRL 6337 HAD-superfamily subfamily IIA hydrolase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2133	Gcaud2133	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 10505..11563 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2133.t1.stop1	Gcaud2133.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 10505..10507 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2133.t1.CDS1	Gcaud2133.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 10505..11563 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2133.t1.exon1	Gcaud2133.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 10505..11563 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2133.t1.start1	Gcaud2133.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 11561..11563 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2133.t1	Gcaud2133.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 10505..11563 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:10505..11563-
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:10505..11563-

mRNA sequence

>Gcaud2133.t1 ID=Gcaud2133.t1|Name=Gcaud2133.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=353bp
MILARTLLAARVLLRRFSTTQPFRGPAFVFDIDGVLTRGSSVLPSARPAL
QSLFDESRSQWRTPITFLTNGGGTTEAARAEKLTNLLKLPVQEHQVVLSH
SPLRNYIPLYPEKAVLTVGNPHCAEIARSYGFKHAISTESLAHIDSHSTP
FARLESVQPSAEDYRVSEMPIGAAFVMTDSRDWGRDIQLLIDVLRSNGDR
SREHSDEQVVDLYFCNPDILFPTEYHLPRLAGGSFGVALQAVYAHVTGKE
LQFVQFGKPHAPNYQLAEGLLRQQLRRMGYCTQTLPTIYAVGDNPPSDVR
GANARGEPWRSVLVRTGNFKGDNDKVDRAHVVVDDVEHAVKHALEKHEVQ
RA*

spliced messenger RNA

>Gcaud2133.t1 ID=Gcaud2133.t1|Name=Gcaud2133.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:10505..11563- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACTAGCCAGGACGCTACTCGCGGCCCGTGTCCTTCTCAGGCGGTT
TTCGACCACTCAACCATTTAGAGGTCCAGCCTTTGTTTTCGACATAGACG
GTGTTCTCACTCGCGGCAGTTCGGTACTTCCCTCGGCTCGACCGGCTCTC
CAGTCCTTATTCGACGAGTCACGGAGCCAATGGCGGACCCCTATTACCTT
TCTGACAAACGGTGGCGGAACGACTGAGGCCGCGCGGGCTGAAAAGCTCA
CGAACTTGTTGAAGCTTCCAGTCCAAGAGCATCAGGTCGTGTTATCGCAC
TCTCCACTGAGAAACTATATACCCTTGTACCCAGAAAAGGCTGTTTTGAC
CGTTGGTAACCCTCACTGTGCCGAAATTGCTCGTTCCTATGGCTTCAAAC
ATGCAATTAGTACGGAATCTCTCGCGCACATCGACTCCCATTCCACCCCG
TTCGCCCGTCTTGAGTCCGTACAGCCTTCTGCAGAAGATTATCGGGTGTC
TGAAATGCCCATCGGAGCCGCTTTCGTGATGACGGACTCTCGCGACTGGG
GCCGTGATATTCAACTATTGATCGACGTTTTGCGGTCTAACGGGGATCGT
AGCAGAGAGCATTCAGATGAGCAAGTTGTCGATTTGTACTTCTGCAATCC
TGATATTCTGTTCCCCACGGAGTACCACCTCCCAAGGCTGGCTGGAGGTT
CTTTCGGCGTTGCGTTGCAAGCCGTCTATGCTCATGTGACTGGAAAGGAG
TTACAATTCGTTCAATTTGGGAAACCGCATGCTCCAAACTATCAGTTGGC
AGAAGGGCTTCTACGGCAGCAATTAAGACGTATGGGGTACTGCACACAAA
CATTACCCACGATTTATGCTGTTGGTGATAACCCGCCTTCGGATGTGCGC
GGTGCGAATGCCAGAGGAGAACCATGGCGATCAGTTTTGGTACGAACTGG
TAATTTCAAGGGAGACAACGATAAAGTCGATAGAGCTCACGTTGTTGTTG
ATGATGTTGAACATGCTGTAAAGCATGCGTTGGAAAAACATGAGGTGCAA
AGGGCTTAA

protein sequence of Gcaud2133.t1

>Gcaud2133.t1 ID=Gcaud2133.t1|Name=Gcaud2133.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=353bp
MILARTLLAARVLLRRFSTTQPFRGPAFVFDIDGVLTRGSSVLPSARPAL
QSLFDESRSQWRTPITFLTNGGGTTEAARAEKLTNLLKLPVQEHQVVLSH
SPLRNYIPLYPEKAVLTVGNPHCAEIARSYGFKHAISTESLAHIDSHSTP
FARLESVQPSAEDYRVSEMPIGAAFVMTDSRDWGRDIQLLIDVLRSNGDR
SREHSDEQVVDLYFCNPDILFPTEYHLPRLAGGSFGVALQAVYAHVTGKE
LQFVQFGKPHAPNYQLAEGLLRQQLRRMGYCTQTLPTIYAVGDNPPSDVR
GANARGEPWRSVLVRTGNFKGDNDKVDRAHVVVDDVEHAVKHALEKHEVQ
RA*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:10505..11563-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2133.t1 ID=Gcaud2133.t1|Name=Gcaud2133.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:10505..11563- (Gracilaria caudata M_176_S67 male)
ATGATACTAGCCAGGACGCTACTCGCGGCCCGTGTCCTTCTCAGGCGGTT
TTCGACCACTCAACCATTTAGAGGTCCAGCCTTTGTTTTCGACATAGACG
GTGTTCTCACTCGCGGCAGTTCGGTACTTCCCTCGGCTCGACCGGCTCTC
CAGTCCTTATTCGACGAGTCACGGAGCCAATGGCGGACCCCTATTACCTT
TCTGACAAACGGTGGCGGAACGACTGAGGCCGCGCGGGCTGAAAAGCTCA
CGAACTTGTTGAAGCTTCCAGTCCAAGAGCATCAGGTCGTGTTATCGCAC
TCTCCACTGAGAAACTATATACCCTTGTACCCAGAAAAGGCTGTTTTGAC
CGTTGGTAACCCTCACTGTGCCGAAATTGCTCGTTCCTATGGCTTCAAAC
ATGCAATTAGTACGGAATCTCTCGCGCACATCGACTCCCATTCCACCCCG
TTCGCCCGTCTTGAGTCCGTACAGCCTTCTGCAGAAGATTATCGGGTGTC
TGAAATGCCCATCGGAGCCGCTTTCGTGATGACGGACTCTCGCGACTGGG
GCCGTGATATTCAACTATTGATCGACGTTTTGCGGTCTAACGGGGATCGT
AGCAGAGAGCATTCAGATGAGCAAGTTGTCGATTTGTACTTCTGCAATCC
TGATATTCTGTTCCCCACGGAGTACCACCTCCCAAGGCTGGCTGGAGGTT
CTTTCGGCGTTGCGTTGCAAGCCGTCTATGCTCATGTGACTGGAAAGGAG
TTACAATTCGTTCAATTTGGGAAACCGCATGCTCCAAACTATCAGTTGGC
AGAAGGGCTTCTACGGCAGCAATTAAGACGTATGGGGTACTGCACACAAA
CATTACCCACGATTTATGCTGTTGGTGATAACCCGCCTTCGGATGTGCGC
GGTGCGAATGCCAGAGGAGAACCATGGCGATCAGTTTTGGTACGAACTGG
TAATTTCAAGGGAGACAACGATAAAGTCGATAGAGCTCACGTTGTTGTTG
ATGATGTTGAACATGCTGTAAAGCATGCGTTGGAAAAACATGAGGTGCAA
AGGGCTTAA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:10505..11563-

>Gcaud2133.t1 ID=Gcaud2133.t1|Name=Gcaud2133.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1059bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:10505..11563- (Gracilaria caudata M_176_S67 male)
ATGATACTAGCCAGGACGCTACTCGCGGCCCGTGTCCTTCTCAGGCGGTT
TTCGACCACTCAACCATTTAGAGGTCCAGCCTTTGTTTTCGACATAGACG
GTGTTCTCACTCGCGGCAGTTCGGTACTTCCCTCGGCTCGACCGGCTCTC
CAGTCCTTATTCGACGAGTCACGGAGCCAATGGCGGACCCCTATTACCTT
TCTGACAAACGGTGGCGGAACGACTGAGGCCGCGCGGGCTGAAAAGCTCA
CGAACTTGTTGAAGCTTCCAGTCCAAGAGCATCAGGTCGTGTTATCGCAC
TCTCCACTGAGAAACTATATACCCTTGTACCCAGAAAAGGCTGTTTTGAC
CGTTGGTAACCCTCACTGTGCCGAAATTGCTCGTTCCTATGGCTTCAAAC
ATGCAATTAGTACGGAATCTCTCGCGCACATCGACTCCCATTCCACCCCG
TTCGCCCGTCTTGAGTCCGTACAGCCTTCTGCAGAAGATTATCGGGTGTC
TGAAATGCCCATCGGAGCCGCTTTCGTGATGACGGACTCTCGCGACTGGG
GCCGTGATATTCAACTATTGATCGACGTTTTGCGGTCTAACGGGGATCGT
AGCAGAGAGCATTCAGATGAGCAAGTTGTCGATTTGTACTTCTGCAATCC
TGATATTCTGTTCCCCACGGAGTACCACCTCCCAAGGCTGGCTGGAGGTT
CTTTCGGCGTTGCGTTGCAAGCCGTCTATGCTCATGTGACTGGAAAGGAG
TTACAATTCGTTCAATTTGGGAAACCGCATGCTCCAAACTATCAGTTGGC
AGAAGGGCTTCTACGGCAGCAATTAAGACGTATGGGGTACTGCACACAAA
CATTACCCACGATTTATGCTGTTGGTGATAACCCGCCTTCGGATGTGCGC
GGTGCGAATGCCAGAGGAGAACCATGGCGATCAGTTTTGGTACGAACTGG
TAATTTCAAGGGAGACAACGATAAAGTCGATAGAGCTCACGTTGTTGTTG
ATGATGTTGAACATGCTGTAAAGCATGCGTTGGAAAAACATGAGGTGCAA
AGGGCTTAA