Gcaud2127.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2127.t1
Unique Name	Gcaud2127.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	573

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_778_length_18212_cov_4.691463	contig	NODE_778_length_18212_cov_4.691463:13055..14773 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118161.KB235922_gene1662
PFAMs	DUF563
Max annot lvl	1117\|Cyanobacteria
Evalue	1.53e-06
EggNOG OGs	COG0457@1\|root,COG4421@1\|root,COG0457@2\|Bacteria,COG4421@2\|Bacteria,1G22H@1117\|Cyanobacteria,3VIB0@52604\|Pleurocapsales
Description	Capsular polysaccharide biosynthesis protein
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2127	Gcaud2127	Gracilaria caudata M_176_S67 male	gene	NODE_778_length_18212_cov_4.691463 13055..14773 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2127.t1.start1	Gcaud2127.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_778_length_18212_cov_4.691463 13055..13057 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2127.t1.CDS1	Gcaud2127.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_778_length_18212_cov_4.691463 13055..14773 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2127.t1.exon1	Gcaud2127.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_778_length_18212_cov_4.691463 13055..14773 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2127.t1.stop1	Gcaud2127.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_778_length_18212_cov_4.691463 14771..14773 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2127.t1	Gcaud2127.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_778_length_18212_cov_4.691463 13055..14773 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_778_length_18212_cov_4.691463:13055..14773+
coding sequence from alignment at NODE_778_length_18212_cov_4.691463:13055..14773+

mRNA sequence

>Gcaud2127.t1 ID=Gcaud2127.t1|Name=Gcaud2127.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=573bp
MKGSSSHHLKYRRCLLGSSQLENALRFASIFIIVGAFVEFSGMSEYVSDS
YNIDESTGIVAHATKSGADAFPIPNIRRAGFSSVTKLQTDTDNQRRMRKN
RERLRLLYKNSDPQTPLAEYLKFHKPKSRPAEKPSFMLEMYWNDENFEDK
VCRIHNACLKRDGSVLLHPWMKSQKYHLRECGVLKVAYMKSDKDFTQENE
VNAGMDIYGIHPTRDHIPHFLTDILPMIYASEVLRPTSSEMKAKSVCEAP
KKRRCDKKIHKDPLYAGFYTADRTGDLPLSGWVPQLAAMLPGRPMARFPK
EMFNDTDKACFRSVIAYEIGSHLRTGRHWYGSSKMFDDYGLTRAAVWRNG
SGRCEVQITILNRFGWQSRAGFLVGRDIVNIEAVTEGIEKLLKEEKYKNL
EARVAVEYFENKSFEEQIDIMQKADIILGVHGAGLGNLVFARQGTPFIEV
QPFTYYAGPFDSVSAALYLPYSRIVAEPDTKNFFKCMEQKAHRLGDDSII
STAREMWNEAVKRRKESGDLNYLMCHRFHQPSLAPMKLCARSQRMKINVH
ETARKLLETAQEVCGRRDEGSG*

spliced messenger RNA

>Gcaud2127.t1 ID=Gcaud2127.t1|Name=Gcaud2127.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1719bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:13055..14773+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGTTCGTCTTCGCATCATCTCAAGTATCGACGATGTCTACTTGG
TAGTTCGCAACTGGAAAACGCGCTGCGGTTTGCTTCTATTTTTATCATTG
TCGGCGCCTTTGTTGAGTTTTCTGGCATGTCCGAGTATGTTTCGGACAGT
TACAATATTGATGAGTCTACGGGGATAGTAGCGCATGCTACAAAAAGTGG
TGCAGATGCGTTTCCTATCCCCAATATCCGACGCGCGGGGTTCTCCTCGG
TAACTAAACTGCAGACGGACACCGATAACCAACGCAGGATGCGAAAGAAT
CGCGAAAGATTACGGTTACTGTACAAGAACAGTGATCCTCAGACCCCTTT
GGCCGAATACCTCAAGTTCCACAAACCAAAATCTCGCCCGGCAGAAAAGC
CGTCTTTCATGTTGGAGATGTATTGGAACGATGAAAACTTTGAGGACAAA
GTTTGCCGAATTCATAATGCATGTCTTAAACGCGATGGTTCTGTTTTATT
GCATCCATGGATGAAGTCTCAGAAGTACCATCTACGTGAATGCGGTGTTT
TGAAAGTGGCGTACATGAAGTCTGATAAGGATTTCACTCAGGAGAATGAA
GTCAATGCCGGCATGGACATCTATGGAATTCATCCAACTCGGGACCATAT
TCCACATTTCCTCACCGATATTCTCCCCATGATATACGCCTCGGAAGTTC
TGAGGCCAACTTCTTCTGAAATGAAGGCAAAGAGTGTTTGTGAAGCACCA
AAGAAAAGGCGCTGCGACAAGAAAATCCATAAAGACCCTTTGTATGCCGG
GTTTTACACCGCTGATCGAACAGGTGACCTGCCTTTATCAGGATGGGTAC
CTCAACTTGCAGCCATGCTGCCTGGACGACCAATGGCACGATTCCCTAAA
GAGATGTTCAATGACACTGACAAGGCATGCTTTAGATCAGTGATCGCGTA
CGAAATCGGAAGTCATTTACGTACCGGACGGCATTGGTACGGGAGTTCCA
AGATGTTCGACGACTACGGTTTGACTAGGGCCGCAGTTTGGCGCAACGGA
AGCGGGCGATGCGAGGTTCAAATAACAATCCTGAACCGCTTCGGGTGGCA
AAGTCGAGCAGGATTTTTGGTGGGGAGAGATATCGTGAACATTGAAGCTG
TTACGGAAGGGATTGAGAAGCTTTTGAAAGAAGAAAAATACAAGAATCTC
GAAGCAAGAGTTGCTGTTGAGTACTTTGAAAACAAATCATTTGAAGAGCA
GATTGATATCATGCAGAAGGCTGACATTATTCTAGGCGTTCATGGGGCTG
GACTTGGAAACCTGGTGTTTGCGCGCCAAGGCACGCCGTTTATTGAGGTA
CAACCATTCACATACTATGCCGGGCCGTTTGATTCGGTCTCGGCAGCTCT
CTACTTACCGTACTCAAGAATTGTGGCTGAACCCGACACAAAGAACTTCT
TCAAATGCATGGAGCAAAAAGCTCATCGTCTTGGGGATGACTCTATCATT
TCAACGGCTAGGGAAATGTGGAACGAAGCTGTAAAGCGGAGAAAGGAATC
AGGTGATCTTAACTACTTGATGTGCCATCGATTCCATCAACCTTCTCTGG
CTCCAATGAAGCTATGCGCTCGTTCGCAAAGAATGAAAATTAACGTTCAT
GAAACGGCTCGGAAGCTACTGGAAACAGCTCAAGAAGTGTGCGGCAGAAG
AGATGAAGGCAGCGGTTGA

protein sequence of Gcaud2127.t1

>Gcaud2127.t1 ID=Gcaud2127.t1|Name=Gcaud2127.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=573bp
MKGSSSHHLKYRRCLLGSSQLENALRFASIFIIVGAFVEFSGMSEYVSDS
YNIDESTGIVAHATKSGADAFPIPNIRRAGFSSVTKLQTDTDNQRRMRKN
RERLRLLYKNSDPQTPLAEYLKFHKPKSRPAEKPSFMLEMYWNDENFEDK
VCRIHNACLKRDGSVLLHPWMKSQKYHLRECGVLKVAYMKSDKDFTQENE
VNAGMDIYGIHPTRDHIPHFLTDILPMIYASEVLRPTSSEMKAKSVCEAP
KKRRCDKKIHKDPLYAGFYTADRTGDLPLSGWVPQLAAMLPGRPMARFPK
EMFNDTDKACFRSVIAYEIGSHLRTGRHWYGSSKMFDDYGLTRAAVWRNG
SGRCEVQITILNRFGWQSRAGFLVGRDIVNIEAVTEGIEKLLKEEKYKNL
EARVAVEYFENKSFEEQIDIMQKADIILGVHGAGLGNLVFARQGTPFIEV
QPFTYYAGPFDSVSAALYLPYSRIVAEPDTKNFFKCMEQKAHRLGDDSII
STAREMWNEAVKRRKESGDLNYLMCHRFHQPSLAPMKLCARSQRMKINVH
ETARKLLETAQEVCGRRDEGSG*

mRNA from alignment at NODE_778_length_18212_cov_4.691463:13055..14773+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2127.t1 ID=Gcaud2127.t1|Name=Gcaud2127.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1719bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:13055..14773+ (Gracilaria caudata M_176_S67 male)
ATGAAGGGTTCGTCTTCGCATCATCTCAAGTATCGACGATGTCTACTTGG
TAGTTCGCAACTGGAAAACGCGCTGCGGTTTGCTTCTATTTTTATCATTG
TCGGCGCCTTTGTTGAGTTTTCTGGCATGTCCGAGTATGTTTCGGACAGT
TACAATATTGATGAGTCTACGGGGATAGTAGCGCATGCTACAAAAAGTGG
TGCAGATGCGTTTCCTATCCCCAATATCCGACGCGCGGGGTTCTCCTCGG
TAACTAAACTGCAGACGGACACCGATAACCAACGCAGGATGCGAAAGAAT
CGCGAAAGATTACGGTTACTGTACAAGAACAGTGATCCTCAGACCCCTTT
GGCCGAATACCTCAAGTTCCACAAACCAAAATCTCGCCCGGCAGAAAAGC
CGTCTTTCATGTTGGAGATGTATTGGAACGATGAAAACTTTGAGGACAAA
GTTTGCCGAATTCATAATGCATGTCTTAAACGCGATGGTTCTGTTTTATT
GCATCCATGGATGAAGTCTCAGAAGTACCATCTACGTGAATGCGGTGTTT
TGAAAGTGGCGTACATGAAGTCTGATAAGGATTTCACTCAGGAGAATGAA
GTCAATGCCGGCATGGACATCTATGGAATTCATCCAACTCGGGACCATAT
TCCACATTTCCTCACCGATATTCTCCCCATGATATACGCCTCGGAAGTTC
TGAGGCCAACTTCTTCTGAAATGAAGGCAAAGAGTGTTTGTGAAGCACCA
AAGAAAAGGCGCTGCGACAAGAAAATCCATAAAGACCCTTTGTATGCCGG
GTTTTACACCGCTGATCGAACAGGTGACCTGCCTTTATCAGGATGGGTAC
CTCAACTTGCAGCCATGCTGCCTGGACGACCAATGGCACGATTCCCTAAA
GAGATGTTCAATGACACTGACAAGGCATGCTTTAGATCAGTGATCGCGTA
CGAAATCGGAAGTCATTTACGTACCGGACGGCATTGGTACGGGAGTTCCA
AGATGTTCGACGACTACGGTTTGACTAGGGCCGCAGTTTGGCGCAACGGA
AGCGGGCGATGCGAGGTTCAAATAACAATCCTGAACCGCTTCGGGTGGCA
AAGTCGAGCAGGATTTTTGGTGGGGAGAGATATCGTGAACATTGAAGCTG
TTACGGAAGGGATTGAGAAGCTTTTGAAAGAAGAAAAATACAAGAATCTC
GAAGCAAGAGTTGCTGTTGAGTACTTTGAAAACAAATCATTTGAAGAGCA
GATTGATATCATGCAGAAGGCTGACATTATTCTAGGCGTTCATGGGGCTG
GACTTGGAAACCTGGTGTTTGCGCGCCAAGGCACGCCGTTTATTGAGGTA
CAACCATTCACATACTATGCCGGGCCGTTTGATTCGGTCTCGGCAGCTCT
CTACTTACCGTACTCAAGAATTGTGGCTGAACCCGACACAAAGAACTTCT
TCAAATGCATGGAGCAAAAAGCTCATCGTCTTGGGGATGACTCTATCATT
TCAACGGCTAGGGAAATGTGGAACGAAGCTGTAAAGCGGAGAAAGGAATC
AGGTGATCTTAACTACTTGATGTGCCATCGATTCCATCAACCTTCTCTGG
CTCCAATGAAGCTATGCGCTCGTTCGCAAAGAATGAAAATTAACGTTCAT
GAAACGGCTCGGAAGCTACTGGAAACAGCTCAAGAAGTGTGCGGCAGAAG
AGATGAAGGCAGCGGTTGA

Coding sequence (CDS) from alignment at NODE_778_length_18212_cov_4.691463:13055..14773+

>Gcaud2127.t1 ID=Gcaud2127.t1|Name=Gcaud2127.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1719bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:13055..14773+ (Gracilaria caudata M_176_S67 male)
ATGAAGGGTTCGTCTTCGCATCATCTCAAGTATCGACGATGTCTACTTGG
TAGTTCGCAACTGGAAAACGCGCTGCGGTTTGCTTCTATTTTTATCATTG
TCGGCGCCTTTGTTGAGTTTTCTGGCATGTCCGAGTATGTTTCGGACAGT
TACAATATTGATGAGTCTACGGGGATAGTAGCGCATGCTACAAAAAGTGG
TGCAGATGCGTTTCCTATCCCCAATATCCGACGCGCGGGGTTCTCCTCGG
TAACTAAACTGCAGACGGACACCGATAACCAACGCAGGATGCGAAAGAAT
CGCGAAAGATTACGGTTACTGTACAAGAACAGTGATCCTCAGACCCCTTT
GGCCGAATACCTCAAGTTCCACAAACCAAAATCTCGCCCGGCAGAAAAGC
CGTCTTTCATGTTGGAGATGTATTGGAACGATGAAAACTTTGAGGACAAA
GTTTGCCGAATTCATAATGCATGTCTTAAACGCGATGGTTCTGTTTTATT
GCATCCATGGATGAAGTCTCAGAAGTACCATCTACGTGAATGCGGTGTTT
TGAAAGTGGCGTACATGAAGTCTGATAAGGATTTCACTCAGGAGAATGAA
GTCAATGCCGGCATGGACATCTATGGAATTCATCCAACTCGGGACCATAT
TCCACATTTCCTCACCGATATTCTCCCCATGATATACGCCTCGGAAGTTC
TGAGGCCAACTTCTTCTGAAATGAAGGCAAAGAGTGTTTGTGAAGCACCA
AAGAAAAGGCGCTGCGACAAGAAAATCCATAAAGACCCTTTGTATGCCGG
GTTTTACACCGCTGATCGAACAGGTGACCTGCCTTTATCAGGATGGGTAC
CTCAACTTGCAGCCATGCTGCCTGGACGACCAATGGCACGATTCCCTAAA
GAGATGTTCAATGACACTGACAAGGCATGCTTTAGATCAGTGATCGCGTA
CGAAATCGGAAGTCATTTACGTACCGGACGGCATTGGTACGGGAGTTCCA
AGATGTTCGACGACTACGGTTTGACTAGGGCCGCAGTTTGGCGCAACGGA
AGCGGGCGATGCGAGGTTCAAATAACAATCCTGAACCGCTTCGGGTGGCA
AAGTCGAGCAGGATTTTTGGTGGGGAGAGATATCGTGAACATTGAAGCTG
TTACGGAAGGGATTGAGAAGCTTTTGAAAGAAGAAAAATACAAGAATCTC
GAAGCAAGAGTTGCTGTTGAGTACTTTGAAAACAAATCATTTGAAGAGCA
GATTGATATCATGCAGAAGGCTGACATTATTCTAGGCGTTCATGGGGCTG
GACTTGGAAACCTGGTGTTTGCGCGCCAAGGCACGCCGTTTATTGAGGTA
CAACCATTCACATACTATGCCGGGCCGTTTGATTCGGTCTCGGCAGCTCT
CTACTTACCGTACTCAAGAATTGTGGCTGAACCCGACACAAAGAACTTCT
TCAAATGCATGGAGCAAAAAGCTCATCGTCTTGGGGATGACTCTATCATT
TCAACGGCTAGGGAAATGTGGAACGAAGCTGTAAAGCGGAGAAAGGAATC
AGGTGATCTTAACTACTTGATGTGCCATCGATTCCATCAACCTTCTCTGG
CTCCAATGAAGCTATGCGCTCGTTCGCAAAGAATGAAAATTAACGTTCAT
GAAACGGCTCGGAAGCTACTGGAAACAGCTCAAGAAGTGTGCGGCAGAAG
AGATGAAGGCAGCGGTTGA