Gcaud2126.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2126.t1
Unique Name	Gcaud2126.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_778_length_18212_cov_4.691463	contig	NODE_778_length_18212_cov_4.691463:10628..11704 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706581.1
Preferred name	FA2H
PFAMs	Cyt-b5,FA_hydroxylase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01265,ko:K08849,ko:K13091,ko:K19703,ko:K19706,ko:K20409
KEGG Pathway	ko04150,ko04217,ko04668,map04150,map04217,map04668
GOs	GO:0000038,GO:0000170,GO:0001949,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006644,GO:0006664,GO:0006665,GO:0006673,GO:0006675,GO:0006687,GO:0006793,GO:0006796,GO:0006807,GO:0007009,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007422,GO:0008150,GO:0008152,GO:0008366,GO:0008544,GO:0008610,GO:0009058,GO:0009888,GO:0009913,GO:0009987,GO:0010001,GO:0010256,GO:0012505,GO:0014003,GO:0014037,GO:0014044,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0019637,GO:0019752,GO:0021782,GO:0022008,GO:0022010,GO:0022011,GO:0030148,GO:0030154,GO:0030258,GO:0030855,GO:0031224,GO:0031984,GO:0032286,GO:0032287,GO:0032291,GO:0032292,GO:0032501,GO:0032502,GO:0032787,GO:0042063,GO:0042127,GO:0042175,GO:0042552,GO:0042634,GO:0043217,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043588,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0048468,GO:0048513,GO:0048709,GO:0048731,GO:0048732,GO:0048733,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051239,GO:0052722,GO:0055114,GO:0060429,GO:0061024,GO:0065007,GO:0071704,GO:0071840,GO:0080132,GO:0098827,GO:1901135,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Evalue	1.05e-121
EggNOG OGs	COG3000@1\|root,COG5274@1\|root,KOG0537@2759\|Eukaryota,KOG0539@2759\|Eukaryota
EC	1.14.18.6,1.14.18.7,2.7.11.1,3.4.11.18
Description	fatty acid alpha-hydroxylase activity
COG category	I
BRITE	ko00000,ko00001,ko01000,ko01001,ko01002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2126	Gcaud2126	Gracilaria caudata M_176_S67 male	gene	NODE_778_length_18212_cov_4.691463 10628..11704 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2126.t1.stop1	Gcaud2126.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_778_length_18212_cov_4.691463 10628..10630 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2126.t1.CDS1	Gcaud2126.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_778_length_18212_cov_4.691463 10628..11704 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2126.t1.exon1	Gcaud2126.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_778_length_18212_cov_4.691463 10628..11704 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2126.t1.start1	Gcaud2126.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_778_length_18212_cov_4.691463 11702..11704 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2126.t1	Gcaud2126.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_778_length_18212_cov_4.691463 10628..11704 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_778_length_18212_cov_4.691463:10628..11704-
coding sequence from alignment at NODE_778_length_18212_cov_4.691463:10628..11704-

mRNA sequence

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=359bp
MCQSETLRKRKRGNHAQTDNASSSAVGYALTSKVVSHHAAPNDAWVIYKG
NVYDITLFLESHPGGADILHDKLGTDVTDAMSGDQPGSHKHSPFAYKMLS
KYKIGQLAGANGEEVIDGNTDPVTGEQLVHWDKPILHQVGMLGDKYHRWI
HSFPTTDHTVKMFTNDTIEGLTKCPWYVPLVFWLPVMALEIVHYIYLIGG
VTNFSMLTFAAMFGLGFIGWLLFEYTLHRFVFHMRTTGYYANIFHFLIHG
HHHITPMDFDRLVFPPVPALLVGSPIWFLAPRLFGVNFGYPWLLGFAVGY
LVYDMTHFWIHHAVPRNSFLKRQKKRHVYHHYFQHSVNFGISNPLFDYIF
KTISETAE*

spliced messenger RNA

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:10628..11704- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCAGTCGGAAACTTTGAGGAAACGTAAGCGAGGAAACCACGCGCA
GACAGACAACGCCTCAAGCAGCGCTGTGGGTTATGCACTCACCAGCAAAG
TCGTATCGCATCATGCCGCCCCAAACGACGCATGGGTGATATACAAGGGC
AATGTGTACGACATCACTCTGTTCCTCGAGTCGCATCCAGGAGGTGCCGA
CATCCTGCACGATAAGCTTGGTACCGACGTGACCGACGCAATGAGCGGCG
ACCAACCTGGCAGCCACAAACACTCCCCATTTGCCTACAAGATGCTCTCC
AAGTACAAGATTGGACAGCTGGCCGGCGCAAATGGTGAGGAAGTGATTGA
CGGAAATACAGATCCTGTCACGGGTGAGCAACTGGTTCATTGGGACAAAC
CCATTCTGCACCAGGTTGGTATGCTCGGTGACAAGTATCATCGATGGATC
CATTCATTTCCTACCACTGACCACACCGTTAAGATGTTCACTAACGATAC
CATCGAAGGTCTGACAAAGTGTCCGTGGTACGTGCCACTCGTTTTCTGGC
TGCCTGTGATGGCTTTGGAAATTGTGCACTACATATATCTTATTGGTGGT
GTCACCAACTTTTCAATGCTCACTTTTGCGGCCATGTTTGGGTTGGGATT
TATTGGGTGGTTGCTTTTCGAGTACACCCTGCATCGCTTCGTGTTCCATA
TGCGCACCACTGGATACTACGCCAATATCTTTCACTTTTTGATTCACGGT
CATCATCATATCACACCTATGGACTTTGACAGATTAGTGTTCCCTCCGGT
GCCAGCGTTGCTGGTTGGGTCGCCCATCTGGTTTCTGGCACCGCGATTGT
TTGGTGTCAATTTCGGGTATCCATGGTTGCTGGGCTTTGCCGTTGGATAC
CTTGTTTATGATATGACTCACTTCTGGATTCACCACGCTGTGCCGCGAAA
CTCTTTTCTCAAGCGACAAAAGAAAAGACATGTGTACCACCATTACTTTC
AACACTCGGTCAATTTTGGTATCTCGAATCCTCTCTTTGACTACATCTTC
AAAACTATATCTGAGACAGCAGAATAG

protein sequence of Gcaud2126.t1

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=359bp
MCQSETLRKRKRGNHAQTDNASSSAVGYALTSKVVSHHAAPNDAWVIYKG
NVYDITLFLESHPGGADILHDKLGTDVTDAMSGDQPGSHKHSPFAYKMLS
KYKIGQLAGANGEEVIDGNTDPVTGEQLVHWDKPILHQVGMLGDKYHRWI
HSFPTTDHTVKMFTNDTIEGLTKCPWYVPLVFWLPVMALEIVHYIYLIGG
VTNFSMLTFAAMFGLGFIGWLLFEYTLHRFVFHMRTTGYYANIFHFLIHG
HHHITPMDFDRLVFPPVPALLVGSPIWFLAPRLFGVNFGYPWLLGFAVGY
LVYDMTHFWIHHAVPRNSFLKRQKKRHVYHHYFQHSVNFGISNPLFDYIF
KTISETAE*

mRNA from alignment at NODE_778_length_18212_cov_4.691463:10628..11704-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:10628..11704- (Gracilaria caudata M_176_S67 male)
ATGTGTCAGTCGGAAACTTTGAGGAAACGTAAGCGAGGAAACCACGCGCA
GACAGACAACGCCTCAAGCAGCGCTGTGGGTTATGCACTCACCAGCAAAG
TCGTATCGCATCATGCCGCCCCAAACGACGCATGGGTGATATACAAGGGC
AATGTGTACGACATCACTCTGTTCCTCGAGTCGCATCCAGGAGGTGCCGA
CATCCTGCACGATAAGCTTGGTACCGACGTGACCGACGCAATGAGCGGCG
ACCAACCTGGCAGCCACAAACACTCCCCATTTGCCTACAAGATGCTCTCC
AAGTACAAGATTGGACAGCTGGCCGGCGCAAATGGTGAGGAAGTGATTGA
CGGAAATACAGATCCTGTCACGGGTGAGCAACTGGTTCATTGGGACAAAC
CCATTCTGCACCAGGTTGGTATGCTCGGTGACAAGTATCATCGATGGATC
CATTCATTTCCTACCACTGACCACACCGTTAAGATGTTCACTAACGATAC
CATCGAAGGTCTGACAAAGTGTCCGTGGTACGTGCCACTCGTTTTCTGGC
TGCCTGTGATGGCTTTGGAAATTGTGCACTACATATATCTTATTGGTGGT
GTCACCAACTTTTCAATGCTCACTTTTGCGGCCATGTTTGGGTTGGGATT
TATTGGGTGGTTGCTTTTCGAGTACACCCTGCATCGCTTCGTGTTCCATA
TGCGCACCACTGGATACTACGCCAATATCTTTCACTTTTTGATTCACGGT
CATCATCATATCACACCTATGGACTTTGACAGATTAGTGTTCCCTCCGGT
GCCAGCGTTGCTGGTTGGGTCGCCCATCTGGTTTCTGGCACCGCGATTGT
TTGGTGTCAATTTCGGGTATCCATGGTTGCTGGGCTTTGCCGTTGGATAC
CTTGTTTATGATATGACTCACTTCTGGATTCACCACGCTGTGCCGCGAAA
CTCTTTTCTCAAGCGACAAAAGAAAAGACATGTGTACCACCATTACTTTC
AACACTCGGTCAATTTTGGTATCTCGAATCCTCTCTTTGACTACATCTTC
AAAACTATATCTGAGACAGCAGAATAG

Coding sequence (CDS) from alignment at NODE_778_length_18212_cov_4.691463:10628..11704-

>Gcaud2126.t1 ID=Gcaud2126.t1|Name=Gcaud2126.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1077bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:10628..11704- (Gracilaria caudata M_176_S67 male)
ATGTGTCAGTCGGAAACTTTGAGGAAACGTAAGCGAGGAAACCACGCGCA
GACAGACAACGCCTCAAGCAGCGCTGTGGGTTATGCACTCACCAGCAAAG
TCGTATCGCATCATGCCGCCCCAAACGACGCATGGGTGATATACAAGGGC
AATGTGTACGACATCACTCTGTTCCTCGAGTCGCATCCAGGAGGTGCCGA
CATCCTGCACGATAAGCTTGGTACCGACGTGACCGACGCAATGAGCGGCG
ACCAACCTGGCAGCCACAAACACTCCCCATTTGCCTACAAGATGCTCTCC
AAGTACAAGATTGGACAGCTGGCCGGCGCAAATGGTGAGGAAGTGATTGA
CGGAAATACAGATCCTGTCACGGGTGAGCAACTGGTTCATTGGGACAAAC
CCATTCTGCACCAGGTTGGTATGCTCGGTGACAAGTATCATCGATGGATC
CATTCATTTCCTACCACTGACCACACCGTTAAGATGTTCACTAACGATAC
CATCGAAGGTCTGACAAAGTGTCCGTGGTACGTGCCACTCGTTTTCTGGC
TGCCTGTGATGGCTTTGGAAATTGTGCACTACATATATCTTATTGGTGGT
GTCACCAACTTTTCAATGCTCACTTTTGCGGCCATGTTTGGGTTGGGATT
TATTGGGTGGTTGCTTTTCGAGTACACCCTGCATCGCTTCGTGTTCCATA
TGCGCACCACTGGATACTACGCCAATATCTTTCACTTTTTGATTCACGGT
CATCATCATATCACACCTATGGACTTTGACAGATTAGTGTTCCCTCCGGT
GCCAGCGTTGCTGGTTGGGTCGCCCATCTGGTTTCTGGCACCGCGATTGT
TTGGTGTCAATTTCGGGTATCCATGGTTGCTGGGCTTTGCCGTTGGATAC
CTTGTTTATGATATGACTCACTTCTGGATTCACCACGCTGTGCCGCGAAA
CTCTTTTCTCAAGCGACAAAAGAAAAGACATGTGTACCACCATTACTTTC
AACACTCGGTCAATTTTGGTATCTCGAATCCTCTCTTTGACTACATCTTC
AAAACTATATCTGAGACAGCAGAATAG