Gcaud2124.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2124.t1
Unique Name	Gcaud2124.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	1492

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_778_length_18212_cov_4.691463	contig	NODE_778_length_18212_cov_4.691463:1673..6148 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	27923.ML070269a-PA
Preferred name	STAG2
PFAMs	STAG
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06671,ko:K13055
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOs	GO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000779,GO:0000780,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0000922,GO:0000981,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005721,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006275,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007135,GO:0007275,GO:0007346,GO:0007399,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010948,GO:0015630,GO:0016043,GO:0016070,GO:0016322,GO:0016363,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030182,GO:0030892,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032875,GO:0032876,GO:0032886,GO:0032991,GO:0033043,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0034990,GO:0035327,GO:0042551,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048285,GO:0048468,GO:0048469,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051177,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051493,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0061982,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0071695,GO:0071704,GO:0071840,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0097659,GO:0098687,GO:0098727,GO:0098813,GO:0140013,GO:0140014,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901673,GO:1902115,GO:1902680,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:2000104,GO:2000112,GO:2000113,GO:2001141
Evalue	6.74e-45
EggNOG OGs	COG5537@1\|root,KOG2011@2759\|Eukaryota,38I10@33154\|Opisthokonta,3BBXN@33208\|Metazoa
Description	regulation of mitotic spindle assembly
COG category	D
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2124	Gcaud2124	Gracilaria caudata M_176_S67 male	gene	NODE_778_length_18212_cov_4.691463 1673..6148 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2124.t1.start1	Gcaud2124.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_778_length_18212_cov_4.691463 1673..1675 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2124.t1.CDS1	Gcaud2124.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_778_length_18212_cov_4.691463 1673..6148 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2124.t1.exon1	Gcaud2124.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_778_length_18212_cov_4.691463 1673..6148 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2124.t1.stop1	Gcaud2124.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_778_length_18212_cov_4.691463 6146..6148 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2124.t1	Gcaud2124.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_778_length_18212_cov_4.691463 1673..6148 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_778_length_18212_cov_4.691463:1673..6148+
coding sequence from alignment at NODE_778_length_18212_cov_4.691463:1673..6148+

mRNA sequence

>Gcaud2124.t1 ID=Gcaud2124.t1|Name=Gcaud2124.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1492bp
MPTEEAVRSPGGDDHPDEQLPPASPKHVFDDEIEMQTQSVVDGASSQPAD
DDDDSPTSKHEANPSQSQLDPAPTNTQPETEAPSQAPAQTSTPRDENDDA
EQDHAETVAQTSSYLFEKILEKPARAPGLVSAWMSHVSINGPEAMASLVS
LVISAARPVPFAHDQLVTSEMIIANDPPESVKEMCQIMAVDAPERVVVLA
KDTASRKVRRAYEDLWRRIAAEAPDIVLYHTDCFDTLIPWLDAMSSSLIR
ALRVSACIAAYRLVDGFIEVNSQLRKNLSSIQRQLNTEKRRSGINVRDQN
AKSTKNRGPSAKGKKKELSAKGKELVNKVDELTAKNIELTELSDRVYRTM
FICRYRDISADVRSLSISALGGWIIMFPEQFLDDTHNKYIGWLLSDKDAG
VRKTSLDVLHRMLKKKDYFANFETFLQRFSDRIFEMAWDKEDIVAVTAIR
LLNFLLPHNNNSKLLRPSHCESICAIALGDSHTEIRRAAGEFLATLVTMD
IDDVGASVTKPKRAYRKRGGRRSSSGPFNTLLREIPPVERAKDDIRELLY
AMARKEDDPVEEVLAVDSTWDHLPALRCWQAFEELLCENHESSSNNEEEE
ALSEAEKGMLCKMLLASAAEASGNGDPNRAKIIEKGEYADPETPSVLLSK
QFLPQLPGLLSQYQSDSTAVSALIQLPLHFTMSTFDQQGQDSHFSALLER
IIGVLLKHTGSEDVTAACAKTLRYFLSDQNPLKKTTSTSLQLCCQRATKE
LSLQVRADLSKSEPDNIAALVSQVRVLAELVDTGLTTYEAVKEVLLFQEN
NLESSELGPLVTMDTVRVACAFAVWSLSRIKSRIASKGSSETPLEDVLDL
EEVKEYRKHGADVVDVLQRICVNSSMAIPVRLISARCILIILTLCRGIEK
NTVMMIIRERTDPGTSGGAPDLDILSLKDSVPSLVKVMRSIVFALVECEL
DQHRSRSSRRSSNISTPDEGDCRDFFACLVQASLQSLLSRSISHLPLFGM
LLKGEREERGSESHEYTTSHICRDYLQQRQIRRTALTQDIIRALGEVFAL
ECTKEEHQNIIRELAESCVSFKYRRDLKAKASTELLQALIDHCTSSATEE
DFVRRLQLLSLASYAVVNCVSQEDGKMAKEQISAIDPHLAKHKDAVNEDL
MKMFDLCRSSITAVADGKTPDLPAFSKLIDRPTSNRGISSRRRKRRIHTP
KAHTPPPEPVTVRKSSRARKKVDYARMEIYESDEDDDDEEVSSEQGKEDA
SPSEPTVADVARNMMEYENSPIAVRKRASREVPSADLSPAKRRRRNLNDA
LEKEMTDPAERSEDQNHQSSTHKNSSTHHTEFDHVSQPDDGESSDQNSSE
KSHSQEVGKGEKVEESENNDEHSNESWERRSKRVSASKKAGQVAQSKGKQ
NGRRSGRNPKHGNLEGSSEADVASKVDGSEVVDENRSSSQQSLGKPGATV
NGSRTQVRSKETTEATEESEMKKSTPSSTGNVVRRRKLRRW*

spliced messenger RNA

>Gcaud2124.t1 ID=Gcaud2124.t1|Name=Gcaud2124.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=4476bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:1673..6148+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACTGAAGAGGCAGTTCGCTCGCCTGGTGGCGACGACCATCCTGA
TGAGCAGCTGCCCCCTGCGTCACCTAAACATGTGTTCGATGATGAGATTG
AGATGCAGACACAATCCGTCGTAGATGGTGCAAGCAGTCAACCTGCTGAT
GACGACGACGACTCCCCCACTTCGAAACATGAAGCAAATCCCTCGCAAAG
TCAACTCGATCCCGCGCCCACCAACACCCAGCCCGAAACCGAGGCACCGT
CGCAAGCCCCAGCCCAAACCTCCACACCCCGCGATGAAAACGACGACGCC
GAACAAGACCACGCCGAAACCGTAGCACAAACGTCTTCCTATCTCTTTGA
GAAGATTCTCGAGAAGCCTGCGCGAGCGCCGGGTCTCGTAAGCGCCTGGA
TGTCTCACGTATCCATCAACGGTCCGGAAGCCATGGCGTCGCTCGTTTCC
CTTGTCATAAGCGCCGCGCGGCCCGTCCCGTTTGCGCACGACCAACTGGT
CACATCGGAGATGATCATAGCCAATGACCCGCCAGAAAGCGTGAAGGAAA
TGTGTCAAATTATGGCTGTTGATGCACCGGAGCGCGTTGTAGTTCTTGCG
AAGGATACGGCGTCACGTAAAGTACGTCGCGCTTACGAAGACCTCTGGCG
ACGCATTGCTGCTGAAGCTCCCGATATTGTTTTGTATCACACCGATTGTT
TTGATACACTTATACCCTGGCTGGATGCTATGTCCAGCTCACTGATAAGG
GCGCTTCGGGTCTCTGCTTGTATTGCTGCATATCGTCTCGTTGACGGCTT
TATTGAAGTAAACTCTCAACTGCGAAAAAACCTTTCTAGCATTCAACGCC
AACTCAATACTGAGAAGCGACGAAGTGGGATCAATGTTCGTGATCAAAAT
GCAAAGAGCACAAAGAATCGCGGCCCCTCAGCAAAAGGCAAGAAAAAGGA
GCTATCAGCAAAGGGCAAGGAATTGGTCAACAAAGTTGATGAACTAACTG
CGAAGAACATCGAATTGACGGAACTCTCTGATAGAGTGTACAGAACAATG
TTCATATGCCGATATCGAGATATTTCTGCAGACGTGCGATCATTGTCAAT
ATCGGCACTTGGTGGGTGGATCATCATGTTTCCTGAACAGTTTCTTGATG
ATACCCATAACAAATACATTGGGTGGCTTCTATCCGATAAAGATGCTGGT
GTGCGGAAAACAAGTCTTGATGTTCTACATAGAATGCTGAAAAAGAAGGA
CTACTTTGCAAACTTTGAAACATTTCTGCAACGTTTCTCAGACCGCATTT
TTGAAATGGCTTGGGACAAAGAGGATATAGTGGCCGTCACTGCGATTCGT
TTGCTGAACTTCCTTCTGCCGCATAATAACAACAGCAAGCTCTTGAGGCC
TTCGCATTGTGAGTCCATATGTGCTATAGCTCTTGGGGACAGTCATACCG
AGATTCGTCGCGCGGCTGGTGAGTTTCTCGCCACATTAGTCACAATGGAT
ATTGATGATGTTGGTGCGTCTGTCACGAAGCCGAAACGCGCGTACAGAAA
GCGAGGCGGGCGAAGGTCATCAAGTGGCCCGTTCAACACGCTTCTGCGGG
AGATACCTCCGGTAGAGCGTGCCAAGGACGACATACGAGAGCTCTTGTAC
GCCATGGCTCGGAAGGAAGATGACCCGGTCGAAGAGGTTCTTGCTGTGGA
TTCCACCTGGGATCACCTACCTGCTCTGAGATGTTGGCAAGCATTTGAAG
AGCTCTTATGTGAAAACCATGAGTCGAGTTCAAACAATGAAGAGGAGGAG
GCTCTAAGTGAGGCTGAGAAAGGTATGCTCTGCAAAATGCTGCTGGCCTC
CGCAGCAGAGGCAAGTGGTAATGGCGACCCCAATCGGGCAAAGATTATTG
AGAAGGGTGAATACGCAGACCCTGAGACCCCCTCGGTATTGCTTTCCAAG
CAGTTCCTGCCACAGCTTCCTGGTTTGCTTAGCCAATACCAGTCAGATTC
TACCGCAGTCAGCGCTCTGATTCAGCTTCCGCTTCATTTTACGATGTCGA
CGTTTGACCAACAAGGCCAAGACAGCCACTTCTCGGCTTTGTTGGAACGC
ATTATTGGGGTTCTTTTGAAGCACACCGGCTCAGAAGATGTGACTGCTGC
CTGCGCTAAAACTTTGCGATACTTTCTGTCCGACCAGAATCCTTTAAAGA
AGACAACCAGTACTTCCCTCCAGCTTTGTTGTCAGCGTGCTACGAAAGAG
CTTTCTTTACAGGTTCGGGCCGATCTTTCGAAGTCCGAGCCCGACAATAT
TGCTGCTCTTGTATCACAAGTGAGGGTGTTGGCTGAACTTGTAGACACTG
GTTTGACAACATATGAAGCTGTCAAGGAAGTTTTGTTATTTCAGGAAAAC
AATCTCGAGTCATCGGAGCTTGGGCCGCTTGTCACTATGGACACAGTTCG
AGTTGCGTGTGCCTTTGCTGTTTGGTCTTTATCAAGGATTAAGTCTCGAA
TTGCTTCCAAAGGGTCATCTGAAACGCCGCTTGAGGACGTGTTGGATTTA
GAAGAAGTGAAAGAGTACCGGAAGCATGGAGCGGACGTGGTAGACGTTCT
GCAACGTATTTGTGTGAACAGTTCCATGGCCATCCCTGTCAGATTGATTA
GCGCGCGATGTATTCTCATAATCCTCACACTTTGTCGTGGAATAGAGAAA
AACACCGTGATGATGATCATTCGTGAACGCACTGATCCGGGAACCTCCGG
GGGAGCACCTGATCTAGATATTCTTAGCCTCAAAGACTCTGTACCAAGCT
TGGTGAAGGTAATGAGATCGATAGTATTCGCTCTTGTGGAGTGTGAACTG
GATCAGCACAGATCTCGAAGTTCGAGACGGAGCAGTAACATCTCAACTCC
GGATGAGGGAGACTGCAGGGATTTCTTTGCTTGTTTAGTACAAGCCTCGT
TGCAATCCTTGTTATCCCGTAGCATATCGCATCTTCCTCTTTTTGGTATG
TTGCTAAAAGGAGAGAGGGAGGAAAGAGGATCCGAGTCCCATGAGTACAC
GACGTCGCATATTTGTCGGGATTACCTCCAGCAACGCCAGATTCGAAGAA
CAGCCCTGACACAAGACATAATACGAGCGCTGGGTGAGGTGTTTGCGCTT
GAATGCACGAAAGAAGAGCACCAAAACATCATCCGAGAACTAGCGGAGTC
ATGTGTCTCATTCAAGTATCGCCGCGATTTGAAGGCGAAGGCTTCCACGG
AACTCCTGCAAGCTCTCATTGACCATTGCACGTCTTCAGCGACGGAAGAG
GACTTTGTCCGTAGGTTGCAGCTTCTGTCGTTGGCCAGTTATGCTGTCGT
GAATTGCGTATCTCAAGAAGACGGCAAAATGGCAAAGGAGCAGATCTCAG
CAATCGACCCCCACTTGGCCAAACATAAAGATGCTGTGAACGAAGATCTG
ATGAAGATGTTTGACCTGTGTCGATCGTCGATTACAGCCGTCGCGGATGG
GAAGACTCCGGATTTACCTGCTTTTTCGAAGCTGATTGACAGGCCCACAT
CCAATCGAGGAATCTCCTCCAGGAGAAGGAAGAGACGAATACACACACCG
AAGGCCCATACTCCACCGCCAGAGCCTGTAACTGTGAGAAAATCTTCAAG
AGCTCGAAAGAAAGTTGATTATGCTCGTATGGAAATTTATGAAAGTGATG
AGGATGACGACGATGAGGAGGTGAGCTCTGAGCAAGGAAAGGAGGACGCT
AGCCCCTCTGAGCCGACCGTAGCGGATGTTGCTCGCAACATGATGGAATA
TGAGAACTCACCGATTGCTGTTCGTAAACGAGCAAGTAGGGAAGTACCTA
GTGCAGACTTGAGCCCAGCAAAGCGACGAAGACGAAATCTTAATGATGCT
CTCGAGAAGGAAATGACTGATCCAGCAGAAAGAAGTGAAGATCAGAATCA
TCAGTCTTCCACCCATAAAAACTCCAGCACTCATCACACTGAATTCGACC
ACGTTTCTCAGCCTGATGATGGAGAGAGTTCTGACCAGAATTCCTCTGAG
AAGTCTCATTCGCAAGAAGTTGGCAAAGGCGAGAAGGTTGAGGAATCCGA
AAATAACGATGAGCATTCAAATGAGTCTTGGGAACGTCGTTCGAAAAGGG
TTTCCGCTAGTAAGAAGGCGGGACAGGTGGCGCAGTCGAAAGGGAAGCAG
AATGGAAGACGTTCTGGGAGAAACCCAAAACATGGAAATCTCGAGGGTTC
TTCTGAGGCAGATGTCGCTTCGAAAGTTGATGGAAGTGAAGTCGTCGACG
AAAACAGGTCATCTAGCCAACAGTCGTTGGGGAAACCAGGTGCAACTGTC
AATGGTAGTCGAACCCAAGTTCGAAGTAAGGAGACCACGGAGGCCACCGA
GGAGAGCGAAATGAAGAAATCAACCCCATCATCTACGGGTAATGTCGTTC
GGAGACGCAAACTGAGACGATGGTAA

protein sequence of Gcaud2124.t1

>Gcaud2124.t1 ID=Gcaud2124.t1|Name=Gcaud2124.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=1492bp
MPTEEAVRSPGGDDHPDEQLPPASPKHVFDDEIEMQTQSVVDGASSQPAD
DDDDSPTSKHEANPSQSQLDPAPTNTQPETEAPSQAPAQTSTPRDENDDA
EQDHAETVAQTSSYLFEKILEKPARAPGLVSAWMSHVSINGPEAMASLVS
LVISAARPVPFAHDQLVTSEMIIANDPPESVKEMCQIMAVDAPERVVVLA
KDTASRKVRRAYEDLWRRIAAEAPDIVLYHTDCFDTLIPWLDAMSSSLIR
ALRVSACIAAYRLVDGFIEVNSQLRKNLSSIQRQLNTEKRRSGINVRDQN
AKSTKNRGPSAKGKKKELSAKGKELVNKVDELTAKNIELTELSDRVYRTM
FICRYRDISADVRSLSISALGGWIIMFPEQFLDDTHNKYIGWLLSDKDAG
VRKTSLDVLHRMLKKKDYFANFETFLQRFSDRIFEMAWDKEDIVAVTAIR
LLNFLLPHNNNSKLLRPSHCESICAIALGDSHTEIRRAAGEFLATLVTMD
IDDVGASVTKPKRAYRKRGGRRSSSGPFNTLLREIPPVERAKDDIRELLY
AMARKEDDPVEEVLAVDSTWDHLPALRCWQAFEELLCENHESSSNNEEEE
ALSEAEKGMLCKMLLASAAEASGNGDPNRAKIIEKGEYADPETPSVLLSK
QFLPQLPGLLSQYQSDSTAVSALIQLPLHFTMSTFDQQGQDSHFSALLER
IIGVLLKHTGSEDVTAACAKTLRYFLSDQNPLKKTTSTSLQLCCQRATKE
LSLQVRADLSKSEPDNIAALVSQVRVLAELVDTGLTTYEAVKEVLLFQEN
NLESSELGPLVTMDTVRVACAFAVWSLSRIKSRIASKGSSETPLEDVLDL
EEVKEYRKHGADVVDVLQRICVNSSMAIPVRLISARCILIILTLCRGIEK
NTVMMIIRERTDPGTSGGAPDLDILSLKDSVPSLVKVMRSIVFALVECEL
DQHRSRSSRRSSNISTPDEGDCRDFFACLVQASLQSLLSRSISHLPLFGM
LLKGEREERGSESHEYTTSHICRDYLQQRQIRRTALTQDIIRALGEVFAL
ECTKEEHQNIIRELAESCVSFKYRRDLKAKASTELLQALIDHCTSSATEE
DFVRRLQLLSLASYAVVNCVSQEDGKMAKEQISAIDPHLAKHKDAVNEDL
MKMFDLCRSSITAVADGKTPDLPAFSKLIDRPTSNRGISSRRRKRRIHTP
KAHTPPPEPVTVRKSSRARKKVDYARMEIYESDEDDDDEEVSSEQGKEDA
SPSEPTVADVARNMMEYENSPIAVRKRASREVPSADLSPAKRRRRNLNDA
LEKEMTDPAERSEDQNHQSSTHKNSSTHHTEFDHVSQPDDGESSDQNSSE
KSHSQEVGKGEKVEESENNDEHSNESWERRSKRVSASKKAGQVAQSKGKQ
NGRRSGRNPKHGNLEGSSEADVASKVDGSEVVDENRSSSQQSLGKPGATV
NGSRTQVRSKETTEATEESEMKKSTPSSTGNVVRRRKLRRW*

mRNA from alignment at NODE_778_length_18212_cov_4.691463:1673..6148+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2124.t1 ID=Gcaud2124.t1|Name=Gcaud2124.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=4476bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:1673..6148+ (Gracilaria caudata M_176_S67 male)
ATGCCGACTGAAGAGGCAGTTCGCTCGCCTGGTGGCGACGACCATCCTGA
TGAGCAGCTGCCCCCTGCGTCACCTAAACATGTGTTCGATGATGAGATTG
AGATGCAGACACAATCCGTCGTAGATGGTGCAAGCAGTCAACCTGCTGAT
GACGACGACGACTCCCCCACTTCGAAACATGAAGCAAATCCCTCGCAAAG
TCAACTCGATCCCGCGCCCACCAACACCCAGCCCGAAACCGAGGCACCGT
CGCAAGCCCCAGCCCAAACCTCCACACCCCGCGATGAAAACGACGACGCC
GAACAAGACCACGCCGAAACCGTAGCACAAACGTCTTCCTATCTCTTTGA
GAAGATTCTCGAGAAGCCTGCGCGAGCGCCGGGTCTCGTAAGCGCCTGGA
TGTCTCACGTATCCATCAACGGTCCGGAAGCCATGGCGTCGCTCGTTTCC
CTTGTCATAAGCGCCGCGCGGCCCGTCCCGTTTGCGCACGACCAACTGGT
CACATCGGAGATGATCATAGCCAATGACCCGCCAGAAAGCGTGAAGGAAA
TGTGTCAAATTATGGCTGTTGATGCACCGGAGCGCGTTGTAGTTCTTGCG
AAGGATACGGCGTCACGTAAAGTACGTCGCGCTTACGAAGACCTCTGGCG
ACGCATTGCTGCTGAAGCTCCCGATATTGTTTTGTATCACACCGATTGTT
TTGATACACTTATACCCTGGCTGGATGCTATGTCCAGCTCACTGATAAGG
GCGCTTCGGGTCTCTGCTTGTATTGCTGCATATCGTCTCGTTGACGGCTT
TATTGAAGTAAACTCTCAACTGCGAAAAAACCTTTCTAGCATTCAACGCC
AACTCAATACTGAGAAGCGACGAAGTGGGATCAATGTTCGTGATCAAAAT
GCAAAGAGCACAAAGAATCGCGGCCCCTCAGCAAAAGGCAAGAAAAAGGA
GCTATCAGCAAAGGGCAAGGAATTGGTCAACAAAGTTGATGAACTAACTG
CGAAGAACATCGAATTGACGGAACTCTCTGATAGAGTGTACAGAACAATG
TTCATATGCCGATATCGAGATATTTCTGCAGACGTGCGATCATTGTCAAT
ATCGGCACTTGGTGGGTGGATCATCATGTTTCCTGAACAGTTTCTTGATG
ATACCCATAACAAATACATTGGGTGGCTTCTATCCGATAAAGATGCTGGT
GTGCGGAAAACAAGTCTTGATGTTCTACATAGAATGCTGAAAAAGAAGGA
CTACTTTGCAAACTTTGAAACATTTCTGCAACGTTTCTCAGACCGCATTT
TTGAAATGGCTTGGGACAAAGAGGATATAGTGGCCGTCACTGCGATTCGT
TTGCTGAACTTCCTTCTGCCGCATAATAACAACAGCAAGCTCTTGAGGCC
TTCGCATTGTGAGTCCATATGTGCTATAGCTCTTGGGGACAGTCATACCG
AGATTCGTCGCGCGGCTGGTGAGTTTCTCGCCACATTAGTCACAATGGAT
ATTGATGATGTTGGTGCGTCTGTCACGAAGCCGAAACGCGCGTACAGAAA
GCGAGGCGGGCGAAGGTCATCAAGTGGCCCGTTCAACACGCTTCTGCGGG
AGATACCTCCGGTAGAGCGTGCCAAGGACGACATACGAGAGCTCTTGTAC
GCCATGGCTCGGAAGGAAGATGACCCGGTCGAAGAGGTTCTTGCTGTGGA
TTCCACCTGGGATCACCTACCTGCTCTGAGATGTTGGCAAGCATTTGAAG
AGCTCTTATGTGAAAACCATGAGTCGAGTTCAAACAATGAAGAGGAGGAG
GCTCTAAGTGAGGCTGAGAAAGGTATGCTCTGCAAAATGCTGCTGGCCTC
CGCAGCAGAGGCAAGTGGTAATGGCGACCCCAATCGGGCAAAGATTATTG
AGAAGGGTGAATACGCAGACCCTGAGACCCCCTCGGTATTGCTTTCCAAG
CAGTTCCTGCCACAGCTTCCTGGTTTGCTTAGCCAATACCAGTCAGATTC
TACCGCAGTCAGCGCTCTGATTCAGCTTCCGCTTCATTTTACGATGTCGA
CGTTTGACCAACAAGGCCAAGACAGCCACTTCTCGGCTTTGTTGGAACGC
ATTATTGGGGTTCTTTTGAAGCACACCGGCTCAGAAGATGTGACTGCTGC
CTGCGCTAAAACTTTGCGATACTTTCTGTCCGACCAGAATCCTTTAAAGA
AGACAACCAGTACTTCCCTCCAGCTTTGTTGTCAGCGTGCTACGAAAGAG
CTTTCTTTACAGGTTCGGGCCGATCTTTCGAAGTCCGAGCCCGACAATAT
TGCTGCTCTTGTATCACAAGTGAGGGTGTTGGCTGAACTTGTAGACACTG
GTTTGACAACATATGAAGCTGTCAAGGAAGTTTTGTTATTTCAGGAAAAC
AATCTCGAGTCATCGGAGCTTGGGCCGCTTGTCACTATGGACACAGTTCG
AGTTGCGTGTGCCTTTGCTGTTTGGTCTTTATCAAGGATTAAGTCTCGAA
TTGCTTCCAAAGGGTCATCTGAAACGCCGCTTGAGGACGTGTTGGATTTA
GAAGAAGTGAAAGAGTACCGGAAGCATGGAGCGGACGTGGTAGACGTTCT
GCAACGTATTTGTGTGAACAGTTCCATGGCCATCCCTGTCAGATTGATTA
GCGCGCGATGTATTCTCATAATCCTCACACTTTGTCGTGGAATAGAGAAA
AACACCGTGATGATGATCATTCGTGAACGCACTGATCCGGGAACCTCCGG
GGGAGCACCTGATCTAGATATTCTTAGCCTCAAAGACTCTGTACCAAGCT
TGGTGAAGGTAATGAGATCGATAGTATTCGCTCTTGTGGAGTGTGAACTG
GATCAGCACAGATCTCGAAGTTCGAGACGGAGCAGTAACATCTCAACTCC
GGATGAGGGAGACTGCAGGGATTTCTTTGCTTGTTTAGTACAAGCCTCGT
TGCAATCCTTGTTATCCCGTAGCATATCGCATCTTCCTCTTTTTGGTATG
TTGCTAAAAGGAGAGAGGGAGGAAAGAGGATCCGAGTCCCATGAGTACAC
GACGTCGCATATTTGTCGGGATTACCTCCAGCAACGCCAGATTCGAAGAA
CAGCCCTGACACAAGACATAATACGAGCGCTGGGTGAGGTGTTTGCGCTT
GAATGCACGAAAGAAGAGCACCAAAACATCATCCGAGAACTAGCGGAGTC
ATGTGTCTCATTCAAGTATCGCCGCGATTTGAAGGCGAAGGCTTCCACGG
AACTCCTGCAAGCTCTCATTGACCATTGCACGTCTTCAGCGACGGAAGAG
GACTTTGTCCGTAGGTTGCAGCTTCTGTCGTTGGCCAGTTATGCTGTCGT
GAATTGCGTATCTCAAGAAGACGGCAAAATGGCAAAGGAGCAGATCTCAG
CAATCGACCCCCACTTGGCCAAACATAAAGATGCTGTGAACGAAGATCTG
ATGAAGATGTTTGACCTGTGTCGATCGTCGATTACAGCCGTCGCGGATGG
GAAGACTCCGGATTTACCTGCTTTTTCGAAGCTGATTGACAGGCCCACAT
CCAATCGAGGAATCTCCTCCAGGAGAAGGAAGAGACGAATACACACACCG
AAGGCCCATACTCCACCGCCAGAGCCTGTAACTGTGAGAAAATCTTCAAG
AGCTCGAAAGAAAGTTGATTATGCTCGTATGGAAATTTATGAAAGTGATG
AGGATGACGACGATGAGGAGGTGAGCTCTGAGCAAGGAAAGGAGGACGCT
AGCCCCTCTGAGCCGACCGTAGCGGATGTTGCTCGCAACATGATGGAATA
TGAGAACTCACCGATTGCTGTTCGTAAACGAGCAAGTAGGGAAGTACCTA
GTGCAGACTTGAGCCCAGCAAAGCGACGAAGACGAAATCTTAATGATGCT
CTCGAGAAGGAAATGACTGATCCAGCAGAAAGAAGTGAAGATCAGAATCA
TCAGTCTTCCACCCATAAAAACTCCAGCACTCATCACACTGAATTCGACC
ACGTTTCTCAGCCTGATGATGGAGAGAGTTCTGACCAGAATTCCTCTGAG
AAGTCTCATTCGCAAGAAGTTGGCAAAGGCGAGAAGGTTGAGGAATCCGA
AAATAACGATGAGCATTCAAATGAGTCTTGGGAACGTCGTTCGAAAAGGG
TTTCCGCTAGTAAGAAGGCGGGACAGGTGGCGCAGTCGAAAGGGAAGCAG
AATGGAAGACGTTCTGGGAGAAACCCAAAACATGGAAATCTCGAGGGTTC
TTCTGAGGCAGATGTCGCTTCGAAAGTTGATGGAAGTGAAGTCGTCGACG
AAAACAGGTCATCTAGCCAACAGTCGTTGGGGAAACCAGGTGCAACTGTC
AATGGTAGTCGAACCCAAGTTCGAAGTAAGGAGACCACGGAGGCCACCGA
GGAGAGCGAAATGAAGAAATCAACCCCATCATCTACGGGTAATGTCGTTC
GGAGACGCAAACTGAGACGATGGTAA

Coding sequence (CDS) from alignment at NODE_778_length_18212_cov_4.691463:1673..6148+

>Gcaud2124.t1 ID=Gcaud2124.t1|Name=Gcaud2124.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=4476bp|location=Sequence derived from alignment at NODE_778_length_18212_cov_4.691463:1673..6148+ (Gracilaria caudata M_176_S67 male)
ATGCCGACTGAAGAGGCAGTTCGCTCGCCTGGTGGCGACGACCATCCTGA
TGAGCAGCTGCCCCCTGCGTCACCTAAACATGTGTTCGATGATGAGATTG
AGATGCAGACACAATCCGTCGTAGATGGTGCAAGCAGTCAACCTGCTGAT
GACGACGACGACTCCCCCACTTCGAAACATGAAGCAAATCCCTCGCAAAG
TCAACTCGATCCCGCGCCCACCAACACCCAGCCCGAAACCGAGGCACCGT
CGCAAGCCCCAGCCCAAACCTCCACACCCCGCGATGAAAACGACGACGCC
GAACAAGACCACGCCGAAACCGTAGCACAAACGTCTTCCTATCTCTTTGA
GAAGATTCTCGAGAAGCCTGCGCGAGCGCCGGGTCTCGTAAGCGCCTGGA
TGTCTCACGTATCCATCAACGGTCCGGAAGCCATGGCGTCGCTCGTTTCC
CTTGTCATAAGCGCCGCGCGGCCCGTCCCGTTTGCGCACGACCAACTGGT
CACATCGGAGATGATCATAGCCAATGACCCGCCAGAAAGCGTGAAGGAAA
TGTGTCAAATTATGGCTGTTGATGCACCGGAGCGCGTTGTAGTTCTTGCG
AAGGATACGGCGTCACGTAAAGTACGTCGCGCTTACGAAGACCTCTGGCG
ACGCATTGCTGCTGAAGCTCCCGATATTGTTTTGTATCACACCGATTGTT
TTGATACACTTATACCCTGGCTGGATGCTATGTCCAGCTCACTGATAAGG
GCGCTTCGGGTCTCTGCTTGTATTGCTGCATATCGTCTCGTTGACGGCTT
TATTGAAGTAAACTCTCAACTGCGAAAAAACCTTTCTAGCATTCAACGCC
AACTCAATACTGAGAAGCGACGAAGTGGGATCAATGTTCGTGATCAAAAT
GCAAAGAGCACAAAGAATCGCGGCCCCTCAGCAAAAGGCAAGAAAAAGGA
GCTATCAGCAAAGGGCAAGGAATTGGTCAACAAAGTTGATGAACTAACTG
CGAAGAACATCGAATTGACGGAACTCTCTGATAGAGTGTACAGAACAATG
TTCATATGCCGATATCGAGATATTTCTGCAGACGTGCGATCATTGTCAAT
ATCGGCACTTGGTGGGTGGATCATCATGTTTCCTGAACAGTTTCTTGATG
ATACCCATAACAAATACATTGGGTGGCTTCTATCCGATAAAGATGCTGGT
GTGCGGAAAACAAGTCTTGATGTTCTACATAGAATGCTGAAAAAGAAGGA
CTACTTTGCAAACTTTGAAACATTTCTGCAACGTTTCTCAGACCGCATTT
TTGAAATGGCTTGGGACAAAGAGGATATAGTGGCCGTCACTGCGATTCGT
TTGCTGAACTTCCTTCTGCCGCATAATAACAACAGCAAGCTCTTGAGGCC
TTCGCATTGTGAGTCCATATGTGCTATAGCTCTTGGGGACAGTCATACCG
AGATTCGTCGCGCGGCTGGTGAGTTTCTCGCCACATTAGTCACAATGGAT
ATTGATGATGTTGGTGCGTCTGTCACGAAGCCGAAACGCGCGTACAGAAA
GCGAGGCGGGCGAAGGTCATCAAGTGGCCCGTTCAACACGCTTCTGCGGG
AGATACCTCCGGTAGAGCGTGCCAAGGACGACATACGAGAGCTCTTGTAC
GCCATGGCTCGGAAGGAAGATGACCCGGTCGAAGAGGTTCTTGCTGTGGA
TTCCACCTGGGATCACCTACCTGCTCTGAGATGTTGGCAAGCATTTGAAG
AGCTCTTATGTGAAAACCATGAGTCGAGTTCAAACAATGAAGAGGAGGAG
GCTCTAAGTGAGGCTGAGAAAGGTATGCTCTGCAAAATGCTGCTGGCCTC
CGCAGCAGAGGCAAGTGGTAATGGCGACCCCAATCGGGCAAAGATTATTG
AGAAGGGTGAATACGCAGACCCTGAGACCCCCTCGGTATTGCTTTCCAAG
CAGTTCCTGCCACAGCTTCCTGGTTTGCTTAGCCAATACCAGTCAGATTC
TACCGCAGTCAGCGCTCTGATTCAGCTTCCGCTTCATTTTACGATGTCGA
CGTTTGACCAACAAGGCCAAGACAGCCACTTCTCGGCTTTGTTGGAACGC
ATTATTGGGGTTCTTTTGAAGCACACCGGCTCAGAAGATGTGACTGCTGC
CTGCGCTAAAACTTTGCGATACTTTCTGTCCGACCAGAATCCTTTAAAGA
AGACAACCAGTACTTCCCTCCAGCTTTGTTGTCAGCGTGCTACGAAAGAG
CTTTCTTTACAGGTTCGGGCCGATCTTTCGAAGTCCGAGCCCGACAATAT
TGCTGCTCTTGTATCACAAGTGAGGGTGTTGGCTGAACTTGTAGACACTG
GTTTGACAACATATGAAGCTGTCAAGGAAGTTTTGTTATTTCAGGAAAAC
AATCTCGAGTCATCGGAGCTTGGGCCGCTTGTCACTATGGACACAGTTCG
AGTTGCGTGTGCCTTTGCTGTTTGGTCTTTATCAAGGATTAAGTCTCGAA
TTGCTTCCAAAGGGTCATCTGAAACGCCGCTTGAGGACGTGTTGGATTTA
GAAGAAGTGAAAGAGTACCGGAAGCATGGAGCGGACGTGGTAGACGTTCT
GCAACGTATTTGTGTGAACAGTTCCATGGCCATCCCTGTCAGATTGATTA
GCGCGCGATGTATTCTCATAATCCTCACACTTTGTCGTGGAATAGAGAAA
AACACCGTGATGATGATCATTCGTGAACGCACTGATCCGGGAACCTCCGG
GGGAGCACCTGATCTAGATATTCTTAGCCTCAAAGACTCTGTACCAAGCT
TGGTGAAGGTAATGAGATCGATAGTATTCGCTCTTGTGGAGTGTGAACTG
GATCAGCACAGATCTCGAAGTTCGAGACGGAGCAGTAACATCTCAACTCC
GGATGAGGGAGACTGCAGGGATTTCTTTGCTTGTTTAGTACAAGCCTCGT
TGCAATCCTTGTTATCCCGTAGCATATCGCATCTTCCTCTTTTTGGTATG
TTGCTAAAAGGAGAGAGGGAGGAAAGAGGATCCGAGTCCCATGAGTACAC
GACGTCGCATATTTGTCGGGATTACCTCCAGCAACGCCAGATTCGAAGAA
CAGCCCTGACACAAGACATAATACGAGCGCTGGGTGAGGTGTTTGCGCTT
GAATGCACGAAAGAAGAGCACCAAAACATCATCCGAGAACTAGCGGAGTC
ATGTGTCTCATTCAAGTATCGCCGCGATTTGAAGGCGAAGGCTTCCACGG
AACTCCTGCAAGCTCTCATTGACCATTGCACGTCTTCAGCGACGGAAGAG
GACTTTGTCCGTAGGTTGCAGCTTCTGTCGTTGGCCAGTTATGCTGTCGT
GAATTGCGTATCTCAAGAAGACGGCAAAATGGCAAAGGAGCAGATCTCAG
CAATCGACCCCCACTTGGCCAAACATAAAGATGCTGTGAACGAAGATCTG
ATGAAGATGTTTGACCTGTGTCGATCGTCGATTACAGCCGTCGCGGATGG
GAAGACTCCGGATTTACCTGCTTTTTCGAAGCTGATTGACAGGCCCACAT
CCAATCGAGGAATCTCCTCCAGGAGAAGGAAGAGACGAATACACACACCG
AAGGCCCATACTCCACCGCCAGAGCCTGTAACTGTGAGAAAATCTTCAAG
AGCTCGAAAGAAAGTTGATTATGCTCGTATGGAAATTTATGAAAGTGATG
AGGATGACGACGATGAGGAGGTGAGCTCTGAGCAAGGAAAGGAGGACGCT
AGCCCCTCTGAGCCGACCGTAGCGGATGTTGCTCGCAACATGATGGAATA
TGAGAACTCACCGATTGCTGTTCGTAAACGAGCAAGTAGGGAAGTACCTA
GTGCAGACTTGAGCCCAGCAAAGCGACGAAGACGAAATCTTAATGATGCT
CTCGAGAAGGAAATGACTGATCCAGCAGAAAGAAGTGAAGATCAGAATCA
TCAGTCTTCCACCCATAAAAACTCCAGCACTCATCACACTGAATTCGACC
ACGTTTCTCAGCCTGATGATGGAGAGAGTTCTGACCAGAATTCCTCTGAG
AAGTCTCATTCGCAAGAAGTTGGCAAAGGCGAGAAGGTTGAGGAATCCGA
AAATAACGATGAGCATTCAAATGAGTCTTGGGAACGTCGTTCGAAAAGGG
TTTCCGCTAGTAAGAAGGCGGGACAGGTGGCGCAGTCGAAAGGGAAGCAG
AATGGAAGACGTTCTGGGAGAAACCCAAAACATGGAAATCTCGAGGGTTC
TTCTGAGGCAGATGTCGCTTCGAAAGTTGATGGAAGTGAAGTCGTCGACG
AAAACAGGTCATCTAGCCAACAGTCGTTGGGGAAACCAGGTGCAACTGTC
AATGGTAGTCGAACCCAAGTTCGAAGTAAGGAGACCACGGAGGCCACCGA
GGAGAGCGAAATGAAGAAATCAACCCCATCATCTACGGGTAATGTCGTTC
GGAGACGCAAACTGAGACGATGGTAA