Gcaud2122.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2122.t1
Unique NameGcaud2122.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1213_length_12574_cov_4.799648contigNODE_1213_length_12574_cov_4.799648:6253..6723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2122Gcaud2122Gracilaria caudata M_176_S67 malegeneNODE_1213_length_12574_cov_4.799648 6253..6723 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2122.t1.start1Gcaud2122.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1213_length_12574_cov_4.799648 6253..6255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2122.t1.CDS1Gcaud2122.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1213_length_12574_cov_4.799648 6253..6723 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2122.t1.exon1Gcaud2122.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1213_length_12574_cov_4.799648 6253..6723 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2122.t1.stop1Gcaud2122.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1213_length_12574_cov_4.799648 6721..6723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2122.t1Gcaud2122.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1213_length_12574_cov_4.799648 6253..6723 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2122.t1 ID=Gcaud2122.t1|Name=Gcaud2122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=157bp
MHRVLRTDKSADEMDGLLHQLDGSVKLINARLQKLVSEQTPLLETPPEAK
AALNSKLQSHPVMRAYRMVEVIFNTAGFLSVAVPAIISIVSSITVSVQEQ
AHEAVILDVTGVATGVSGPVATILVGRRVLNYMRSAIRTVIWHEANRIRD
EVVEDV*
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spliced messenger RNA

>Gcaud2122.t1 ID=Gcaud2122.t1|Name=Gcaud2122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=471bp|location=Sequence derived from alignment at NODE_1213_length_12574_cov_4.799648:6253..6723+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCGTGCTGCGCACGGACAAGAGCGCGGATGAAATGGATGGGCT
TTTGCACCAACTGGACGGCTCCGTCAAACTGATCAACGCCAGATTGCAAA
AGCTTGTGTCTGAACAGACTCCGTTGCTTGAGACGCCGCCTGAAGCAAAG
GCCGCGTTGAATTCGAAGCTTCAATCGCATCCCGTTATGCGCGCCTACCG
TATGGTCGAGGTCATTTTCAACACCGCTGGCTTCCTCAGCGTAGCGGTGC
CCGCCATCATCTCCATCGTGAGCTCCATCACGGTTTCCGTTCAGGAACAG
GCGCATGAAGCTGTCATCCTGGATGTAACGGGCGTTGCTACTGGCGTGAG
CGGGCCTGTGGCCACCATTCTGGTGGGTCGACGGGTGCTCAACTATATGC
GATCGGCTATTAGAACAGTGATTTGGCATGAAGCGAATCGTATACGCGAC
GAAGTTGTGGAAGATGTTTGA
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protein sequence of Gcaud2122.t1

>Gcaud2122.t1 ID=Gcaud2122.t1|Name=Gcaud2122.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=157bp
MHRVLRTDKSADEMDGLLHQLDGSVKLINARLQKLVSEQTPLLETPPEAK
AALNSKLQSHPVMRAYRMVEVIFNTAGFLSVAVPAIISIVSSITVSVQEQ
AHEAVILDVTGVATGVSGPVATILVGRRVLNYMRSAIRTVIWHEANRIRD
EVVEDV*
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mRNA from alignment at NODE_1213_length_12574_cov_4.799648:6253..6723+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2122.t1 ID=Gcaud2122.t1|Name=Gcaud2122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=471bp|location=Sequence derived from alignment at NODE_1213_length_12574_cov_4.799648:6253..6723+ (Gracilaria caudata M_176_S67 male)
ATGCATCGCGTGCTGCGCACGGACAAGAGCGCGGATGAAATGGATGGGCT
TTTGCACCAACTGGACGGCTCCGTCAAACTGATCAACGCCAGATTGCAAA
AGCTTGTGTCTGAACAGACTCCGTTGCTTGAGACGCCGCCTGAAGCAAAG
GCCGCGTTGAATTCGAAGCTTCAATCGCATCCCGTTATGCGCGCCTACCG
TATGGTCGAGGTCATTTTCAACACCGCTGGCTTCCTCAGCGTAGCGGTGC
CCGCCATCATCTCCATCGTGAGCTCCATCACGGTTTCCGTTCAGGAACAG
GCGCATGAAGCTGTCATCCTGGATGTAACGGGCGTTGCTACTGGCGTGAG
CGGGCCTGTGGCCACCATTCTGGTGGGTCGACGGGTGCTCAACTATATGC
GATCGGCTATTAGAACAGTGATTTGGCATGAAGCGAATCGTATACGCGAC
GAAGTTGTGGAAGATGTTTGA
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Coding sequence (CDS) from alignment at NODE_1213_length_12574_cov_4.799648:6253..6723+

>Gcaud2122.t1 ID=Gcaud2122.t1|Name=Gcaud2122.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=471bp|location=Sequence derived from alignment at NODE_1213_length_12574_cov_4.799648:6253..6723+ (Gracilaria caudata M_176_S67 male)
ATGCATCGCGTGCTGCGCACGGACAAGAGCGCGGATGAAATGGATGGGCT
TTTGCACCAACTGGACGGCTCCGTCAAACTGATCAACGCCAGATTGCAAA
AGCTTGTGTCTGAACAGACTCCGTTGCTTGAGACGCCGCCTGAAGCAAAG
GCCGCGTTGAATTCGAAGCTTCAATCGCATCCCGTTATGCGCGCCTACCG
TATGGTCGAGGTCATTTTCAACACCGCTGGCTTCCTCAGCGTAGCGGTGC
CCGCCATCATCTCCATCGTGAGCTCCATCACGGTTTCCGTTCAGGAACAG
GCGCATGAAGCTGTCATCCTGGATGTAACGGGCGTTGCTACTGGCGTGAG
CGGGCCTGTGGCCACCATTCTGGTGGGTCGACGGGTGCTCAACTATATGC
GATCGGCTATTAGAACAGTGATTTGGCATGAAGCGAATCGTATACGCGAC
GAAGTTGTGGAAGATGTTTGA
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