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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 554065.XP_005847419.1 |
| PFAMs | 2OG-FeII_Oxy_3 |
| Max annot lvl | 3041|Chlorophyta |
| Evalue | 1.81e-51 |
| EggNOG OGs | 2C14X@1|root,2S2NY@2759|Eukaryota,37V9W@33090|Viridiplantae,34M6R@3041|Chlorophyta |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2121.t1.stop1 | Gcaud2121.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_789_length_17968_cov_4.013593 11987..11989 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2121.t1.exon1 | Gcaud2121.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_789_length_17968_cov_4.013593 11987..14506 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2121.t1.start1 | Gcaud2121.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_789_length_17968_cov_4.013593 14504..14506 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2121.t1 ID=Gcaud2121.t1|Name=Gcaud2121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp MMASDSFLSTLSNALDSVNVTTTFAVGGPAHTLPLPALNVTDVGAIALPL QQTQADALRAVSVQSPFGRGSDTVIDTSVRSSREISTPSISLGQVWNTAI QELAQRMASALGVANAEVSAQLYKLVLYQPGDFFKPHQDTEKSPGMFATL VVQLPSDFSSAALIVSHGDQRKVFDYAENSDVYFFATAFFADCHHELTEV KGGNRLVLLYNLIRCDGDAPGRELVRHDVVVDKLVGAAEEWEQNQQLKKF TYKLEHQYTETNISFKKLKGNDAARVSILRQSAKFDLFLALVEKHEHGDA DVPYHYSRRRRGYYDDEDKENGAMFSMQFVHESSITTNKVIDENDVQVNM SVLNCDEEEGGKFFDGLDPDKEEFEGYTGNAGPTMDYFYHCTVLFVIPRC GAFAYACEDSFEEGVRLVLRRVDSGAPDAAQTLLEAVDRAKDYLTVAYNC LADLLHLACRLKHKVASRSLIGLMDSGANIILGGCMSQKHVDALVFVVSL FEWNEFGPLVTNLVRKTPKLMIAHAAALAIRVSELDNMLDSADCIATAVM DAGDAGPVYEGAVANLAKMLFKLQSCVRHRANFLSKCLNLSPVGLATCIV IVFKCYAEDDAKHGVPAEIAELTRKYLAVAFTTGAATRSASHAGKVFGAL LCADPRDEQLLDELSNKIISTNCAPLLRETLRAPQVRERVGDAHVTSVAS ARAKQLRYPEPIGSNVQPHAFVPGHPEVTAFLRSGAPSMKYQAFTGRRHA SNFARKHFWGTFNRNENHCATAEAFGLRSNAYVIITKRDYVHQQNLKQYQ LDQEELRDIQRFLGNAEEQKVDDNVKRRRLNPNEVIEID* back to topspliced messenger RNA >Gcaud2121.t1 ID=Gcaud2121.t1|Name=Gcaud2121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2520bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:11987..14506- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGATGGCTTCGGATTCATTCCTCTCAACCCTGTCAAATGCTCTGGACAG CGTCAACGTAACAACCACCTTCGCTGTCGGTGGCCCCGCGCACACACTTC CTCTCCCGGCCCTCAACGTCACCGATGTGGGCGCCATAGCACTACCCCTT CAGCAAACGCAGGCCGACGCTCTGCGCGCCGTATCCGTACAATCGCCGTT CGGTCGTGGCTCCGACACCGTCATAGATACGTCCGTTCGCTCAAGTCGCG AAATCTCTACCCCATCAATCTCACTTGGTCAAGTATGGAATACCGCCATC CAAGAACTCGCGCAGCGCATGGCATCCGCCTTAGGCGTGGCCAACGCAGA GGTGTCAGCACAGCTGTATAAACTGGTGCTGTATCAACCTGGTGATTTCT TCAAGCCGCATCAGGACACCGAGAAGTCGCCGGGTATGTTTGCAACGCTT GTGGTGCAACTCCCCTCAGACTTTTCGTCCGCAGCTTTGATTGTCTCCCA CGGTGACCAGCGCAAGGTGTTTGATTACGCAGAAAACAGTGATGTTTACT TCTTTGCCACAGCTTTTTTCGCTGACTGCCATCACGAGTTAACCGAGGTG AAAGGGGGAAACCGGCTCGTACTTTTGTACAATCTTATACGCTGCGACGG TGACGCGCCGGGCAGAGAGCTTGTACGGCACGATGTAGTGGTGGACAAAC TCGTTGGCGCTGCTGAAGAGTGGGAACAGAATCAACAGCTAAAGAAGTTC ACCTATAAGCTGGAGCACCAGTACACGGAAACGAACATCTCGTTCAAGAA ACTCAAAGGAAACGATGCCGCGCGCGTATCGATACTGCGTCAATCTGCAA AGTTTGATCTTTTCTTGGCACTTGTCGAGAAACACGAACATGGTGATGCA GATGTCCCTTATCATTACAGTCGTCGTCGTCGTGGATACTATGACGATGA AGACAAAGAAAATGGCGCGATGTTCTCAATGCAATTCGTTCATGAATCAT CAATTACTACCAACAAAGTTATCGATGAGAACGATGTGCAAGTGAATATG TCCGTTCTGAATTGCGATGAAGAAGAAGGAGGGAAATTCTTCGACGGTCT TGATCCGGACAAAGAGGAGTTTGAAGGATACACTGGGAACGCGGGGCCAA CAATGGATTATTTCTATCACTGTACCGTCCTTTTTGTTATTCCGCGCTGC GGGGCATTCGCTTACGCGTGTGAAGACAGTTTCGAAGAGGGGGTGCGGCT CGTACTTCGTCGTGTTGACTCTGGTGCACCTGATGCGGCTCAAACGCTTT TGGAAGCTGTTGACAGAGCCAAAGATTATCTTACTGTCGCGTACAATTGC TTGGCCGATCTGCTCCACCTTGCATGCAGACTTAAACACAAGGTCGCCTC CCGTTCTCTCATAGGTCTCATGGATTCAGGCGCAAATATCATTCTTGGTG GATGTATGTCGCAAAAGCATGTGGACGCGCTTGTTTTCGTGGTAAGTTTG TTTGAATGGAACGAGTTTGGGCCGTTAGTGACCAATCTCGTGCGAAAGAC GCCTAAGCTAATGATCGCACATGCTGCAGCGCTCGCAATAAGGGTTTCGG AGTTAGACAATATGCTTGATTCTGCTGATTGCATTGCCACGGCGGTTATG GACGCCGGCGATGCCGGACCCGTCTACGAAGGAGCGGTTGCAAACTTGGC GAAGATGTTGTTCAAACTGCAGTCCTGCGTCCGACACAGGGCCAATTTTC TCTCCAAGTGTCTTAATTTGTCGCCCGTGGGTCTTGCGACGTGCATTGTG ATCGTGTTTAAGTGTTACGCTGAAGACGATGCCAAACACGGGGTTCCGGC TGAGATCGCGGAGCTTACTCGTAAGTATCTCGCTGTGGCATTTACAACTG GCGCTGCTACGCGATCAGCATCTCATGCCGGTAAAGTATTCGGGGCGCTG CTCTGTGCGGATCCTAGAGATGAACAGTTACTTGACGAACTGTCGAACAA GATTATCAGCACAAATTGCGCACCACTACTTCGAGAGACACTACGTGCGC CGCAAGTGCGAGAAAGGGTTGGTGATGCTCATGTGACGTCGGTCGCTTCG GCGCGCGCCAAACAGTTGCGATATCCGGAGCCTATCGGTTCCAATGTGCA GCCACACGCCTTCGTGCCGGGACATCCTGAGGTCACAGCTTTTCTCCGCA GCGGTGCCCCTTCAATGAAGTACCAAGCGTTTACGGGTCGTAGACATGCG TCAAACTTTGCTCGCAAGCATTTTTGGGGAACGTTCAATAGAAACGAAAA CCACTGTGCTACTGCCGAGGCTTTTGGCCTTAGATCTAACGCGTATGTGA TCATCACGAAAAGGGACTATGTCCACCAACAGAACTTGAAGCAGTACCAA CTGGACCAAGAAGAGCTACGAGACATACAACGTTTTCTTGGTAATGCCGA AGAACAAAAAGTTGATGATAATGTCAAGCGCAGACGGCTCAACCCAAATG AAGTGATCGAGATAGATTGA back to topprotein sequence of Gcaud2121.t1 >Gcaud2121.t1 ID=Gcaud2121.t1|Name=Gcaud2121.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=840bp
MMASDSFLSTLSNALDSVNVTTTFAVGGPAHTLPLPALNVTDVGAIALPL QQTQADALRAVSVQSPFGRGSDTVIDTSVRSSREISTPSISLGQVWNTAI QELAQRMASALGVANAEVSAQLYKLVLYQPGDFFKPHQDTEKSPGMFATL VVQLPSDFSSAALIVSHGDQRKVFDYAENSDVYFFATAFFADCHHELTEV KGGNRLVLLYNLIRCDGDAPGRELVRHDVVVDKLVGAAEEWEQNQQLKKF TYKLEHQYTETNISFKKLKGNDAARVSILRQSAKFDLFLALVEKHEHGDA DVPYHYSRRRRGYYDDEDKENGAMFSMQFVHESSITTNKVIDENDVQVNM SVLNCDEEEGGKFFDGLDPDKEEFEGYTGNAGPTMDYFYHCTVLFVIPRC GAFAYACEDSFEEGVRLVLRRVDSGAPDAAQTLLEAVDRAKDYLTVAYNC LADLLHLACRLKHKVASRSLIGLMDSGANIILGGCMSQKHVDALVFVVSL FEWNEFGPLVTNLVRKTPKLMIAHAAALAIRVSELDNMLDSADCIATAVM DAGDAGPVYEGAVANLAKMLFKLQSCVRHRANFLSKCLNLSPVGLATCIV IVFKCYAEDDAKHGVPAEIAELTRKYLAVAFTTGAATRSASHAGKVFGAL LCADPRDEQLLDELSNKIISTNCAPLLRETLRAPQVRERVGDAHVTSVAS ARAKQLRYPEPIGSNVQPHAFVPGHPEVTAFLRSGAPSMKYQAFTGRRHA SNFARKHFWGTFNRNENHCATAEAFGLRSNAYVIITKRDYVHQQNLKQYQ LDQEELRDIQRFLGNAEEQKVDDNVKRRRLNPNEVIEID* back to topmRNA from alignment at NODE_789_length_17968_cov_4.013593:11987..14506- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2121.t1 ID=Gcaud2121.t1|Name=Gcaud2121.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2520bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:11987..14506- (Gracilaria caudata M_176_S67 male) ATGATGGCTTCGGATTCATTCCTCTCAACCCTGTCAAATGCTCTGGACAG
CGTCAACGTAACAACCACCTTCGCTGTCGGTGGCCCCGCGCACACACTTC
CTCTCCCGGCCCTCAACGTCACCGATGTGGGCGCCATAGCACTACCCCTT
CAGCAAACGCAGGCCGACGCTCTGCGCGCCGTATCCGTACAATCGCCGTT
CGGTCGTGGCTCCGACACCGTCATAGATACGTCCGTTCGCTCAAGTCGCG
AAATCTCTACCCCATCAATCTCACTTGGTCAAGTATGGAATACCGCCATC
CAAGAACTCGCGCAGCGCATGGCATCCGCCTTAGGCGTGGCCAACGCAGA
GGTGTCAGCACAGCTGTATAAACTGGTGCTGTATCAACCTGGTGATTTCT
TCAAGCCGCATCAGGACACCGAGAAGTCGCCGGGTATGTTTGCAACGCTT
GTGGTGCAACTCCCCTCAGACTTTTCGTCCGCAGCTTTGATTGTCTCCCA
CGGTGACCAGCGCAAGGTGTTTGATTACGCAGAAAACAGTGATGTTTACT
TCTTTGCCACAGCTTTTTTCGCTGACTGCCATCACGAGTTAACCGAGGTG
AAAGGGGGAAACCGGCTCGTACTTTTGTACAATCTTATACGCTGCGACGG
TGACGCGCCGGGCAGAGAGCTTGTACGGCACGATGTAGTGGTGGACAAAC
TCGTTGGCGCTGCTGAAGAGTGGGAACAGAATCAACAGCTAAAGAAGTTC
ACCTATAAGCTGGAGCACCAGTACACGGAAACGAACATCTCGTTCAAGAA
ACTCAAAGGAAACGATGCCGCGCGCGTATCGATACTGCGTCAATCTGCAA
AGTTTGATCTTTTCTTGGCACTTGTCGAGAAACACGAACATGGTGATGCA
GATGTCCCTTATCATTACAGTCGTCGTCGTCGTGGATACTATGACGATGA
AGACAAAGAAAATGGCGCGATGTTCTCAATGCAATTCGTTCATGAATCAT
CAATTACTACCAACAAAGTTATCGATGAGAACGATGTGCAAGTGAATATG
TCCGTTCTGAATTGCGATGAAGAAGAAGGAGGGAAATTCTTCGACGGTCT
TGATCCGGACAAAGAGGAGTTTGAAGGATACACTGGGAACGCGGGGCCAA
CAATGGATTATTTCTATCACTGTACCGTCCTTTTTGTTATTCCGCGCTGC
GGGGCATTCGCTTACGCGTGTGAAGACAGTTTCGAAGAGGGGGTGCGGCT
CGTACTTCGTCGTGTTGACTCTGGTGCACCTGATGCGGCTCAAACGCTTT
TGGAAGCTGTTGACAGAGCCAAAGATTATCTTACTGTCGCGTACAATTGC
TTGGCCGATCTGCTCCACCTTGCATGCAGACTTAAACACAAGGTCGCCTC
CCGTTCTCTCATAGGTCTCATGGATTCAGGCGCAAATATCATTCTTGGTG
GATGTATGTCGCAAAAGCATGTGGACGCGCTTGTTTTCGTGGTAAGTTTG
TTTGAATGGAACGAGTTTGGGCCGTTAGTGACCAATCTCGTGCGAAAGAC
GCCTAAGCTAATGATCGCACATGCTGCAGCGCTCGCAATAAGGGTTTCGG
AGTTAGACAATATGCTTGATTCTGCTGATTGCATTGCCACGGCGGTTATG
GACGCCGGCGATGCCGGACCCGTCTACGAAGGAGCGGTTGCAAACTTGGC
GAAGATGTTGTTCAAACTGCAGTCCTGCGTCCGACACAGGGCCAATTTTC
TCTCCAAGTGTCTTAATTTGTCGCCCGTGGGTCTTGCGACGTGCATTGTG
ATCGTGTTTAAGTGTTACGCTGAAGACGATGCCAAACACGGGGTTCCGGC
TGAGATCGCGGAGCTTACTCGTAAGTATCTCGCTGTGGCATTTACAACTG
GCGCTGCTACGCGATCAGCATCTCATGCCGGTAAAGTATTCGGGGCGCTG
CTCTGTGCGGATCCTAGAGATGAACAGTTACTTGACGAACTGTCGAACAA
GATTATCAGCACAAATTGCGCACCACTACTTCGAGAGACACTACGTGCGC
CGCAAGTGCGAGAAAGGGTTGGTGATGCTCATGTGACGTCGGTCGCTTCG
GCGCGCGCCAAACAGTTGCGATATCCGGAGCCTATCGGTTCCAATGTGCA
GCCACACGCCTTCGTGCCGGGACATCCTGAGGTCACAGCTTTTCTCCGCA
GCGGTGCCCCTTCAATGAAGTACCAAGCGTTTACGGGTCGTAGACATGCG
TCAAACTTTGCTCGCAAGCATTTTTGGGGAACGTTCAATAGAAACGAAAA
CCACTGTGCTACTGCCGAGGCTTTTGGCCTTAGATCTAACGCGTATGTGA
TCATCACGAAAAGGGACTATGTCCACCAACAGAACTTGAAGCAGTACCAA
CTGGACCAAGAAGAGCTACGAGACATACAACGTTTTCTTGGTAATGCCGA
AGAACAAAAAGTTGATGATAATGTCAAGCGCAGACGGCTCAACCCAAATG
AAGTGATCGAGATAGATTGA back to topCoding sequence (CDS) from alignment at NODE_789_length_17968_cov_4.013593:11987..14506- >Gcaud2121.t1 ID=Gcaud2121.t1|Name=Gcaud2121.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2520bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:11987..14506- (Gracilaria caudata M_176_S67 male) ATGATGGCTTCGGATTCATTCCTCTCAACCCTGTCAAATGCTCTGGACAG CGTCAACGTAACAACCACCTTCGCTGTCGGTGGCCCCGCGCACACACTTC CTCTCCCGGCCCTCAACGTCACCGATGTGGGCGCCATAGCACTACCCCTT CAGCAAACGCAGGCCGACGCTCTGCGCGCCGTATCCGTACAATCGCCGTT CGGTCGTGGCTCCGACACCGTCATAGATACGTCCGTTCGCTCAAGTCGCG AAATCTCTACCCCATCAATCTCACTTGGTCAAGTATGGAATACCGCCATC CAAGAACTCGCGCAGCGCATGGCATCCGCCTTAGGCGTGGCCAACGCAGA GGTGTCAGCACAGCTGTATAAACTGGTGCTGTATCAACCTGGTGATTTCT TCAAGCCGCATCAGGACACCGAGAAGTCGCCGGGTATGTTTGCAACGCTT GTGGTGCAACTCCCCTCAGACTTTTCGTCCGCAGCTTTGATTGTCTCCCA CGGTGACCAGCGCAAGGTGTTTGATTACGCAGAAAACAGTGATGTTTACT TCTTTGCCACAGCTTTTTTCGCTGACTGCCATCACGAGTTAACCGAGGTG AAAGGGGGAAACCGGCTCGTACTTTTGTACAATCTTATACGCTGCGACGG TGACGCGCCGGGCAGAGAGCTTGTACGGCACGATGTAGTGGTGGACAAAC TCGTTGGCGCTGCTGAAGAGTGGGAACAGAATCAACAGCTAAAGAAGTTC ACCTATAAGCTGGAGCACCAGTACACGGAAACGAACATCTCGTTCAAGAA ACTCAAAGGAAACGATGCCGCGCGCGTATCGATACTGCGTCAATCTGCAA AGTTTGATCTTTTCTTGGCACTTGTCGAGAAACACGAACATGGTGATGCA GATGTCCCTTATCATTACAGTCGTCGTCGTCGTGGATACTATGACGATGA AGACAAAGAAAATGGCGCGATGTTCTCAATGCAATTCGTTCATGAATCAT CAATTACTACCAACAAAGTTATCGATGAGAACGATGTGCAAGTGAATATG TCCGTTCTGAATTGCGATGAAGAAGAAGGAGGGAAATTCTTCGACGGTCT TGATCCGGACAAAGAGGAGTTTGAAGGATACACTGGGAACGCGGGGCCAA CAATGGATTATTTCTATCACTGTACCGTCCTTTTTGTTATTCCGCGCTGC GGGGCATTCGCTTACGCGTGTGAAGACAGTTTCGAAGAGGGGGTGCGGCT CGTACTTCGTCGTGTTGACTCTGGTGCACCTGATGCGGCTCAAACGCTTT TGGAAGCTGTTGACAGAGCCAAAGATTATCTTACTGTCGCGTACAATTGC TTGGCCGATCTGCTCCACCTTGCATGCAGACTTAAACACAAGGTCGCCTC CCGTTCTCTCATAGGTCTCATGGATTCAGGCGCAAATATCATTCTTGGTG GATGTATGTCGCAAAAGCATGTGGACGCGCTTGTTTTCGTGGTAAGTTTG TTTGAATGGAACGAGTTTGGGCCGTTAGTGACCAATCTCGTGCGAAAGAC GCCTAAGCTAATGATCGCACATGCTGCAGCGCTCGCAATAAGGGTTTCGG AGTTAGACAATATGCTTGATTCTGCTGATTGCATTGCCACGGCGGTTATG GACGCCGGCGATGCCGGACCCGTCTACGAAGGAGCGGTTGCAAACTTGGC GAAGATGTTGTTCAAACTGCAGTCCTGCGTCCGACACAGGGCCAATTTTC TCTCCAAGTGTCTTAATTTGTCGCCCGTGGGTCTTGCGACGTGCATTGTG ATCGTGTTTAAGTGTTACGCTGAAGACGATGCCAAACACGGGGTTCCGGC TGAGATCGCGGAGCTTACTCGTAAGTATCTCGCTGTGGCATTTACAACTG GCGCTGCTACGCGATCAGCATCTCATGCCGGTAAAGTATTCGGGGCGCTG CTCTGTGCGGATCCTAGAGATGAACAGTTACTTGACGAACTGTCGAACAA GATTATCAGCACAAATTGCGCACCACTACTTCGAGAGACACTACGTGCGC CGCAAGTGCGAGAAAGGGTTGGTGATGCTCATGTGACGTCGGTCGCTTCG GCGCGCGCCAAACAGTTGCGATATCCGGAGCCTATCGGTTCCAATGTGCA GCCACACGCCTTCGTGCCGGGACATCCTGAGGTCACAGCTTTTCTCCGCA GCGGTGCCCCTTCAATGAAGTACCAAGCGTTTACGGGTCGTAGACATGCG TCAAACTTTGCTCGCAAGCATTTTTGGGGAACGTTCAATAGAAACGAAAA CCACTGTGCTACTGCCGAGGCTTTTGGCCTTAGATCTAACGCGTATGTGA TCATCACGAAAAGGGACTATGTCCACCAACAGAACTTGAAGCAGTACCAA CTGGACCAAGAAGAGCTACGAGACATACAACGTTTTCTTGGTAATGCCGA AGAACAAAAAGTTGATGATAATGTCAAGCGCAGACGGCTCAACCCAAATG AAGTGATCGAGATAGATTGA back to top
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