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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 248742.XP_005651123.1 |
| PFAMs | PA,zf-RING_2 |
| Max annot lvl | 33090|Viridiplantae |
| KEGG ko | ko:K15692 |
| GOs | GO:0000139,GO:0000209,GO:0000322,GO:0000325,GO:0000326,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0031090,GO:0031984,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:1901564 |
| Evalue | 2.95e-08 |
| EggNOG OGs | KOG4628@1|root,KOG4628@2759|Eukaryota,37QFZ@33090|Viridiplantae |
| EC | 2.3.2.27 |
| Description | Receptor homology region, transmembrane domain- and RING domain-containing protein |
| COG category | O |
| BRITE | ko00000,ko01000,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2117.t1.stop1 | Gcaud2117.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_789_length_17968_cov_4.013593 1828..1830 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp
YVALITLVFIFACALYFAISNWRGIDREMNDSQWRERECTLVGDIQVLQR
ADTEQFRVRVNVTLSSAQQTPQAAYYGRMQTTYSQSEAQQIRTDLTARRE
QNNDTLPCWVRDALSTPSAISLLPISASSSVYLAWTGTFMAAVVGVILIT
VCSSSLGAPMGVAPRARGGVTTTPPAVAKSTHLTERQAMSVCARFEQQVD
ARSVKEWTCSICLEDEHEHAQHTVNTVVLPCGHRFHNACIKQWLWKGKGL
CPLCKWDAREFIAEQKRAAAHAADEALSSEWDAATTTSTTTPPSTPSTPS
TPNTRTTRGGSVRVSTD* back to topspliced messenger RNA >Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=954bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
TATGTGGCGCTCATCACGCTGGTATTTATCTTTGCGTGCGCGCTGTACTT
TGCCATCTCCAACTGGCGAGGCATCGACAGAGAGATGAATGACTCGCAAT
GGAGAGAGCGCGAGTGCACGCTGGTGGGCGACATTCAAGTGCTACAACGC
GCCGATACCGAGCAGTTCCGCGTGCGCGTCAACGTCACATTATCCTCCGC
GCAACAAACGCCGCAAGCCGCGTACTACGGGCGCATGCAAACCACCTACT
CGCAGTCCGAGGCGCAGCAAATCCGCACCGATCTCACCGCGCGCCGCGAG
CAGAACAACGACACGCTACCGTGCTGGGTGCGCGACGCGCTGAGCACGCC
GTCGGCCATTTCGCTGCTGCCCATCAGCGCGTCGTCCAGCGTGTATCTGG
CGTGGACGGGCACGTTCATGGCCGCCGTGGTGGGCGTGATTCTCATCACG
GTGTGCTCCAGCTCGCTGGGCGCGCCTATGGGCGTGGCGCCGCGGGCGCG
CGGTGGCGTGACCACCACGCCGCCGGCGGTGGCGAAAAGCACGCACCTCA
CGGAACGACAGGCGATGAGCGTTTGCGCCAGGTTTGAACAGCAGGTGGAC
GCGCGTAGCGTGAAGGAGTGGACGTGCTCCATCTGTCTGGAGGATGAACA
TGAGCACGCGCAGCACACCGTCAACACGGTGGTGCTGCCGTGCGGACACC
GCTTCCACAACGCATGCATCAAGCAATGGCTGTGGAAGGGAAAGGGACTG
TGCCCGCTGTGCAAGTGGGACGCGCGCGAATTCATCGCCGAGCAGAAACG
CGCCGCCGCGCACGCAGCGGACGAGGCGCTGAGCAGCGAGTGGGACGCCG
CCACCACCACcaGCACCACCACGCcgccgagcacgccgagcacgccgagc
acgccgaacacgcGCACGACGCGCGGCGGCAGCGTGCGCGTCAGCACTGA
CTGA back to topprotein sequence of Gcaud2117.t1 >Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=318bp
YVALITLVFIFACALYFAISNWRGIDREMNDSQWRERECTLVGDIQVLQR
ADTEQFRVRVNVTLSSAQQTPQAAYYGRMQTTYSQSEAQQIRTDLTARRE
QNNDTLPCWVRDALSTPSAISLLPISASSSVYLAWTGTFMAAVVGVILIT
VCSSSLGAPMGVAPRARGGVTTTPPAVAKSTHLTERQAMSVCARFEQQVD
ARSVKEWTCSICLEDEHEHAQHTVNTVVLPCGHRFHNACIKQWLWKGKGL
CPLCKWDAREFIAEQKRAAAHAADEALSSEWDAATTTSTTTPPSTPSTPS
TPNTRTTRGGSVRVSTD* back to topmRNA from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ Legend: polypeptideCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1373bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ (Gracilaria caudata M_176_S67 male)
TATGTGGCGCTCATCACGCTGGTATTTATCTTTGCGTGCGCGCTGTACTT
TGCCATCTCCAACTGGCGAGGCATCGACGTAAGTTTTTTTTTTTCTTTTG
TTTGTGTGTGTTATGTGTGTGAGAGAGAGAGAAAGAATTCAAACTCACCG
ATGATGCGGCGCGTGTTCATTTTGTGTGCCACAAAAAAAAAAAATGCCAG
AGAGAGATGAATGACTCGCAATGGAGAGAGCGCGAGTGCACGCTGGTGGG
CGACATTCAAGTGCTACAACGCGCCGATACCGAGCAGTTCCGCGTGCGCG
TCAACGTCACATTATCCTCCGCGCAACAAACGCCGCAAGCCGCGTACTAC
GGGCGCATGCAAACCACCTACTCGCAGTCCGAGGCGCAGCAAATCCGCAC
CGATCTCACCGCGCGCCGCGAGCAGAACAACGACACGCTACCGTGCTGGG
TGCGCGACGCGCTGAGCACGCCGTCGGCCATTTCGCTGCTGCCCATCAGC
GCGTCGTCCAGCGTGTATCTGGCGTGGACGGGCACGTTCATGGCCGCCGT
GGTGGGCGTGATTCTCATCACGGTGTGCTCCAGCTCGCTGGGCGCGCCTA
TGGGCGTGGCGCCGCGGGCGCGCGGTGGCGTGACCACCACGCCGCCGGCG
GTGGCGAAAAGCACGCACCTCACGGAACGACAGGCGATGAGCGTTTGCGC
CAGGTTTGAACAGCAGGTGGACGCGCGTAGCGTGAAGGAGTGGACGTGCT
CCATCTGTCTGGAGGATGAACATGAGCACGCGCAGCACACCGTCAACACG
GTGGTGCTGCCGTGCGGACACCGCTTCCACAACGCGTACGTTTCtttttt
tttgttgttgttggtgttgttgttgttgtgtgagattttgctgacgtttt
tatttgcgcttttttttgtttgtgtGCGCGCAGATGCATCAAGCAATGGC
TGTGGAAGGGAAAGGGACTGTGCCCGCTGTGCAAGTGGGACGCGCGCGAA
TTCATCGCCGAGCAGAAACGCGCCGCCGCGCACGCAGCGGACGAGGCGCT
GAGCAGCGAGTGGGACGCCGCCACCACCACGTCTGTGTTTTCGTCGTccg
cgcccgacgccgcgtccgcgccgcactcgctcagcagtctgcccttctcc
gcgcccgcgcacccgcccgcgcacccgcccgcgccggcgcagcgcgacgc
tgcTGCGCATGTGGCGCTCGACATGCACGTgtcgtcgtcgccgtcgtcgt
cgtcgccgcgccactctcagcaccaccagcaGCACCACCACGCcgccgag
cacgccgagcacgccgagcacgccgaacacgcGCACGACGCGCGGCGGCA
GCGTGCGCGTCAGCACTGACTGA back to topCoding sequence (CDS) from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ >Gcaud2117.t1 ID=Gcaud2117.t1|Name=Gcaud2117.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=954bp|location=Sequence derived from alignment at NODE_789_length_17968_cov_4.013593:458..1830+ (Gracilaria caudata M_176_S67 male)
TATGTGGCGCTCATCACGCTGGTATTTATCTTTGCGTGCGCGCTGTACTT
TGCCATCTCCAACTGGCGAGGCATCGACAGAGAGATGAATGACTCGCAAT
GGAGAGAGCGCGAGTGCACGCTGGTGGGCGACATTCAAGTGCTACAACGC
GCCGATACCGAGCAGTTCCGCGTGCGCGTCAACGTCACATTATCCTCCGC
GCAACAAACGCCGCAAGCCGCGTACTACGGGCGCATGCAAACCACCTACT
CGCAGTCCGAGGCGCAGCAAATCCGCACCGATCTCACCGCGCGCCGCGAG
CAGAACAACGACACGCTACCGTGCTGGGTGCGCGACGCGCTGAGCACGCC
GTCGGCCATTTCGCTGCTGCCCATCAGCGCGTCGTCCAGCGTGTATCTGG
CGTGGACGGGCACGTTCATGGCCGCCGTGGTGGGCGTGATTCTCATCACG
GTGTGCTCCAGCTCGCTGGGCGCGCCTATGGGCGTGGCGCCGCGGGCGCG
CGGTGGCGTGACCACCACGCCGCCGGCGGTGGCGAAAAGCACGCACCTCA
CGGAACGACAGGCGATGAGCGTTTGCGCCAGGTTTGAACAGCAGGTGGAC
GCGCGTAGCGTGAAGGAGTGGACGTGCTCCATCTGTCTGGAGGATGAACA
TGAGCACGCGCAGCACACCGTCAACACGGTGGTGCTGCCGTGCGGACACC
GCTTCCACAACGCATGCATCAAGCAATGGCTGTGGAAGGGAAAGGGACTG
TGCCCGCTGTGCAAGTGGGACGCGCGCGAATTCATCGCCGAGCAGAAACG
CGCCGCCGCGCACGCAGCGGACGAGGCGCTGAGCAGCGAGTGGGACGCCG
CCACCACCACcaGCACCACCACGCcgccgagcacgccgagcacgccgagc
acgccgaacacgcGCACGACGCGCGGCGGCAGCGTGCGCGTCAGCACTGA
CTGA back to top
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