Gcaud2116.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2116.t1
Unique Name	Gcaud2116.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1126_length_13510_cov_4.780237	contig	NODE_1126_length_13510_cov_4.780237:7560..8631 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS146CT
PFAMs	FF,Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08282
Evalue	7.32e-40
EggNOG OGs	KOG0594@1\|root,KOG0594@2759\|Eukaryota
EC	2.7.11.1
Description	cyclin-dependent protein serine/threonine kinase activity
COG category	G
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2116	Gcaud2116	Gracilaria caudata M_176_S67 male	gene	NODE_1126_length_13510_cov_4.780237 7560..8631 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2116.t1	Gcaud2116.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1126_length_13510_cov_4.780237 7560..8631 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2116.t1.stop1	Gcaud2116.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1126_length_13510_cov_4.780237 7560..7562 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2116.t1.CDS1	Gcaud2116.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1126_length_13510_cov_4.780237 7560..8064 -
Gcaud2116.t1.CDS2	Gcaud2116.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1126_length_13510_cov_4.780237 8132..8631 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2116.t1.exon1	Gcaud2116.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1126_length_13510_cov_4.780237 7560..8064 -
Gcaud2116.t1.exon2	Gcaud2116.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1126_length_13510_cov_4.780237 8132..8631 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2116.t1.intron1	Gcaud2116.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1126_length_13510_cov_4.780237 8065..8131 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2116.t1.start1	Gcaud2116.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1126_length_13510_cov_4.780237 8629..8631 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1126_length_13510_cov_4.780237:7560..8631-
coding sequence from alignment at NODE_1126_length_13510_cov_4.780237:7560..8631-

mRNA sequence

>Gcaud2116.t1 ID=Gcaud2116.t1|Name=Gcaud2116.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MATTYLSPGSFNISFETSSWNGNFGAIFVGEYIDPTLETNKPFDIVVKCP
INSDIGRELYNMEKYTNLKLNNSFSEKKRFPEYVGELIIPSDSRIATGLS
RLGLVWRRIGTGETLEDYMKTSRISVLMSLLNVRHPSPPIRRGLAAGVLQ
ELSLIVNDLQSCGIVHRDIKPENILVVPGDSSGTPLKAIDFGSSCDWKSP
FKRGLRTATCDPTYTAPERRLDLFRPAYRFDVYSIGLIVLRCALPSLTEA
RAFSSFVSEILGKCRFSFERASSAVLNGRLAASEALRQELQELMSPVNED
LYAILVTMLTGDPKDRADVRDCLNCRLLRSGLYT*

spliced messenger RNA

>Gcaud2116.t1 ID=Gcaud2116.t1|Name=Gcaud2116.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:7560..8631- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCACTTATCTATCACCTGGCTCCTTTAACATAAGCTTCGAAAC
AAGCTCCTGGAATGGAAACTTTGGCGCAATTTTTGTGGGAGAATATATTG
ATCCTACACTAGAGACAAACAAACCCTTTGACATTGTAGTTAAATGTCCC
ATTAACTCAGATATAGGGCGAGAACTTTACAACATGGAAAAATACACAAA
TCTCAAACTGAACAACAGCTTTAGTGAGAAAAAGCGGTTTCCTGAATATG
TCGGAGAACTTATTATCCCGAGCGACTCTCGCATTGCGACTGGGCTTTCC
CGACTGGGACTGGTTTGGCGAAGAATCGGTACAGGTGAAACGCTTGAAGA
CTATATGAAAACGTCACGGATTTCCGTGCTTATGTCATTGTTAAACGTTA
GGCATCCATCACCGCCCATCCGGAGAGGTCTTGCTGCGGGTGTACTTCAG
GAACTTTCGCTGATTGTAAACGATTTGCAATCGTGTGGGATCGTGCACAG
AGACATTAAGCCTGAAAACATCCTTGTTGTTCCAGGTGACTCTTCTGGAA
CACCTCTGAAAGCTATTGACTTTGGTTCGTCTTGTGATTGGAAATCACCA
TTTAAGAGGGGCCTGCGAACCGCGACTTGTGATCCTACTTACACAGCACC
AGAGAGACGATTGGACTTATTCCGACCCGCCTATCGTTTTGACGTCTATA
GCATCGGTCTCATAGTCCTGCGATGTGCTCTTCCAAGCCTAACTGAAGCA
CGTGCTTTTTCCAGTTTTGTATCCGAGATTCTTGGCAAGTGTCGTTTCTC
CTTTGAAAGAGCTAGTTCAGCAGTGCTAAATGGACGCTTGGCCGCGTCGG
AAGCACTTCGACAAGAGCTCCAAGAATTGATGTCACCGGTCAACGAGGAC
TTGTATGCTATTCTAGTAACAATGCTTACCGGGGATCCAAAAGATCGTGC
GGATGTACGAGATTGCTTAAACTGCAGACTTCTGCGATCCGGGTTGTATA
CGTAA

protein sequence of Gcaud2116.t1

>Gcaud2116.t1 ID=Gcaud2116.t1|Name=Gcaud2116.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MATTYLSPGSFNISFETSSWNGNFGAIFVGEYIDPTLETNKPFDIVVKCP
INSDIGRELYNMEKYTNLKLNNSFSEKKRFPEYVGELIIPSDSRIATGLS
RLGLVWRRIGTGETLEDYMKTSRISVLMSLLNVRHPSPPIRRGLAAGVLQ
ELSLIVNDLQSCGIVHRDIKPENILVVPGDSSGTPLKAIDFGSSCDWKSP
FKRGLRTATCDPTYTAPERRLDLFRPAYRFDVYSIGLIVLRCALPSLTEA
RAFSSFVSEILGKCRFSFERASSAVLNGRLAASEALRQELQELMSPVNED
LYAILVTMLTGDPKDRADVRDCLNCRLLRSGLYT*

mRNA from alignment at NODE_1126_length_13510_cov_4.780237:7560..8631-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2116.t1 ID=Gcaud2116.t1|Name=Gcaud2116.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1072bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:7560..8631- (Gracilaria caudata M_176_S67 male)
ATGGCAACCACTTATCTATCACCTGGCTCCTTTAACATAAGCTTCGAAAC
AAGCTCCTGGAATGGAAACTTTGGCGCAATTTTTGTGGGAGAATATATTG
ATCCTACACTAGAGACAAACAAACCCTTTGACATTGTAGTTAAATGTCCC
ATTAACTCAGATATAGGGCGAGAACTTTACAACATGGAAAAATACACAAA
TCTCAAACTGAACAACAGCTTTAGTGAGAAAAAGCGGTTTCCTGAATATG
TCGGAGAACTTATTATCCCGAGCGACTCTCGCATTGCGACTGGGCTTTCC
CGACTGGGACTGGTTTGGCGAAGAATCGGTACAGGTGAAACGCTTGAAGA
CTATATGAAAACGTCACGGATTTCCGTGCTTATGTCATTGTTAAACGTTA
GGCATCCATCACCGCCCATCCGGAGAGGTCTTGCTGCGGGTGTACTTCAG
GAACTTTCGCTGATTGTAAACGATTTGCAATCGTGTGGGATCGTGCACAG
GTACGGAAGTTCAAAGACACATCCACCCCGAGGAATTTCTAACTAACGTT
TTAGTTTCGTCCTGCAGAGACATTAAGCCTGAAAACATCCTTGTTGTTCC
AGGTGACTCTTCTGGAACACCTCTGAAAGCTATTGACTTTGGTTCGTCTT
GTGATTGGAAATCACCATTTAAGAGGGGCCTGCGAACCGCGACTTGTGAT
CCTACTTACACAGCACCAGAGAGACGATTGGACTTATTCCGACCCGCCTA
TCGTTTTGACGTCTATAGCATCGGTCTCATAGTCCTGCGATGTGCTCTTC
CAAGCCTAACTGAAGCACGTGCTTTTTCCAGTTTTGTATCCGAGATTCTT
GGCAAGTGTCGTTTCTCCTTTGAAAGAGCTAGTTCAGCAGTGCTAAATGG
ACGCTTGGCCGCGTCGGAAGCACTTCGACAAGAGCTCCAAGAATTGATGT
CACCGGTCAACGAGGACTTGTATGCTATTCTAGTAACAATGCTTACCGGG
GATCCAAAAGATCGTGCGGATGTACGAGATTGCTTAAACTGCAGACTTCT
GCGATCCGGGTTGTATACGTAA

Coding sequence (CDS) from alignment at NODE_1126_length_13510_cov_4.780237:7560..8631-

>Gcaud2116.t1 ID=Gcaud2116.t1|Name=Gcaud2116.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:7560..8631- (Gracilaria caudata M_176_S67 male)
ATGGCAACCACTTATCTATCACCTGGCTCCTTTAACATAAGCTTCGAAAC
AAGCTCCTGGAATGGAAACTTTGGCGCAATTTTTGTGGGAGAATATATTG
ATCCTACACTAGAGACAAACAAACCCTTTGACATTGTAGTTAAATGTCCC
ATTAACTCAGATATAGGGCGAGAACTTTACAACATGGAAAAATACACAAA
TCTCAAACTGAACAACAGCTTTAGTGAGAAAAAGCGGTTTCCTGAATATG
TCGGAGAACTTATTATCCCGAGCGACTCTCGCATTGCGACTGGGCTTTCC
CGACTGGGACTGGTTTGGCGAAGAATCGGTACAGGTGAAACGCTTGAAGA
CTATATGAAAACGTCACGGATTTCCGTGCTTATGTCATTGTTAAACGTTA
GGCATCCATCACCGCCCATCCGGAGAGGTCTTGCTGCGGGTGTACTTCAG
GAACTTTCGCTGATTGTAAACGATTTGCAATCGTGTGGGATCGTGCACAG
AGACATTAAGCCTGAAAACATCCTTGTTGTTCCAGGTGACTCTTCTGGAA
CACCTCTGAAAGCTATTGACTTTGGTTCGTCTTGTGATTGGAAATCACCA
TTTAAGAGGGGCCTGCGAACCGCGACTTGTGATCCTACTTACACAGCACC
AGAGAGACGATTGGACTTATTCCGACCCGCCTATCGTTTTGACGTCTATA
GCATCGGTCTCATAGTCCTGCGATGTGCTCTTCCAAGCCTAACTGAAGCA
CGTGCTTTTTCCAGTTTTGTATCCGAGATTCTTGGCAAGTGTCGTTTCTC
CTTTGAAAGAGCTAGTTCAGCAGTGCTAAATGGACGCTTGGCCGCGTCGG
AAGCACTTCGACAAGAGCTCCAAGAATTGATGTCACCGGTCAACGAGGAC
TTGTATGCTATTCTAGTAACAATGCTTACCGGGGATCCAAAAGATCGTGC
GGATGTACGAGATTGCTTAAACTGCAGACTTCTGCGATCCGGGTTGTATA
CGTAA