Gcaud2114.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2114.t1
Unique NameGcaud2114.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1126_length_13510_cov_4.780237contigNODE_1126_length_13510_cov_4.780237:5240..5957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5059.CADAFLAP00002245
PFAMsRibosomal_L40e,ubiquitin,zf-RRN7
Max annot lvl4751|Fungi
KEGG koko:K02927,ko:K15219
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue5.4e-75
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota,39ZU5@33154|Opisthokonta,3P1TN@4751|Fungi,3QMXK@4890|Ascomycota,20GXI@147545|Eurotiomycetes,3S8G4@5042|Eurotiales
DescriptionRibosomal_L40e
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2114Gcaud2114Gracilaria caudata M_176_S67 malegeneNODE_1126_length_13510_cov_4.780237 5240..5957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2114.t1Gcaud2114.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1126_length_13510_cov_4.780237 5240..5957 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2114.t1.stop1Gcaud2114.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1126_length_13510_cov_4.780237 5240..5242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2114.t1.CDS1Gcaud2114.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1126_length_13510_cov_4.780237 5240..5273 -
Gcaud2114.t1.CDS2Gcaud2114.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1126_length_13510_cov_4.780237 5384..5789 -
Gcaud2114.t1.CDS3Gcaud2114.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1126_length_13510_cov_4.780237 5870..5957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2114.t1.exon1Gcaud2114.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1126_length_13510_cov_4.780237 5240..5273 -
Gcaud2114.t1.exon2Gcaud2114.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1126_length_13510_cov_4.780237 5384..5789 -
Gcaud2114.t1.exon3Gcaud2114.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1126_length_13510_cov_4.780237 5870..5957 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2114.t1.intron1Gcaud2114.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1126_length_13510_cov_4.780237 5274..5383 -
Gcaud2114.t1.intron2Gcaud2114.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1126_length_13510_cov_4.780237 5790..5869 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2114.t1.start1Gcaud2114.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1126_length_13510_cov_4.780237 5955..5957 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2114.t1 ID=Gcaud2114.t1|Name=Gcaud2114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=176bp
MPNSDSQAATRVTWAFHLASEKQIKLNIFANSAPQRLTESALFKLFTMQI
FVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDD
RTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARL
PPRAVNCRKKKCGHSNQLRPKKKLK*
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spliced messenger RNA

>Gcaud2114.t1 ID=Gcaud2114.t1|Name=Gcaud2114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:5240..5957- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAATTCCGATTCGCAGGCCGCCACTCGTGTTACTTGGGCATTCCA
TTTGGCAAGCGAAAAACAAATTAAATTAAACATTTTTGCAAATTCCGCCC
CCCAACGTCTAACTGAATCAGCGCTATTCAAGTTGTTCACGATGCAGATC
TTTGTGAAGACTCTCACGGGAAAGACTATCACTCTTGAGGTTGAATCCTC
AGATAGCATCAGCAATGTCAAGACTAAGATTCAAGATAAGGAAGGTATCC
CTCCGGATCAGCAACGACTGATCTTTGCCGGCAAGCAGCTCGAAGATGAC
CGCACTCTTTCTGATTACAACATCCAGAAGGAGTCTACTCTTCACTTGGT
TCTTCGTCTTCGTGGTGGCCTAATTGAACCTTCTCTTGCGCAACTTGCTC
GGGAAACAAACTGCGACAGGAAGATCTGTCGCAAGTGCTACGCGCGTTTG
CCGCCGCGTGCAGTCAACTGCCGCAAGAAGAAGTGTGGTCACAGCAACCA
GCTGCGCCCTAAGAAGAAGCTGAAGTAA
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protein sequence of Gcaud2114.t1

>Gcaud2114.t1 ID=Gcaud2114.t1|Name=Gcaud2114.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=176bp
MPNSDSQAATRVTWAFHLASEKQIKLNIFANSAPQRLTESALFKLFTMQI
FVKTLTGKTITLEVESSDSISNVKTKIQDKEGIPPDQQRLIFAGKQLEDD
RTLSDYNIQKESTLHLVLRLRGGLIEPSLAQLARETNCDRKICRKCYARL
PPRAVNCRKKKCGHSNQLRPKKKLK*
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mRNA from alignment at NODE_1126_length_13510_cov_4.780237:5240..5957-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2114.t1 ID=Gcaud2114.t1|Name=Gcaud2114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=718bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:5240..5957- (Gracilaria caudata M_176_S67 male)
ATGCCTAATTCCGATTCGCAGGCCGCCACTCGTGTTACTTGGGCATTCCA
TTTGGCAAGCGAAAAACAAATTAAATTAAACATTTTTGGTAAAGCAATGA
ACCCTTGTAGTCGCCGGCGTTGAAGTCCTTGGCAAGACAATTTGTGCCAA
CGCGGTCGTGCGTCTCAGCAAATTCCGCCCCCCAACGTCTAACTGAATCA
GCGCTATTCAAGTTGTTCACGATGCAGATCTTTGTGAAGACTCTCACGGG
AAAGACTATCACTCTTGAGGTTGAATCCTCAGATAGCATCAGCAATGTCA
AGACTAAGATTCAAGATAAGGAAGGTATCCCTCCGGATCAGCAACGACTG
ATCTTTGCCGGCAAGCAGCTCGAAGATGACCGCACTCTTTCTGATTACAA
CATCCAGAAGGAGTCTACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGCC
TAATTGAACCTTCTCTTGCGCAACTTGCTCGGGAAACAAACTGCGACAGG
AAGATCTGTCGCAAGTGCTACGCGCGTTTGCCGCCGCGTGCAGTCAACTG
CCGCAAGAAGAAGTGTGGTCACAGGTAGGTCGGCAGAAATTGAAATGTGT
TCGATGGAGCTAGTCTACTTGTGGGAGTACTAACTGATTATACGTGGTTT
GTTTGCGTTTGTACGAATTGGTTCATGCGGATAGCAACCAGCTGCGCCCT
AAGAAGAAGCTGAAGTAA
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Coding sequence (CDS) from alignment at NODE_1126_length_13510_cov_4.780237:5240..5957-

>Gcaud2114.t1 ID=Gcaud2114.t1|Name=Gcaud2114.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=528bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:5240..5957- (Gracilaria caudata M_176_S67 male)
ATGCCTAATTCCGATTCGCAGGCCGCCACTCGTGTTACTTGGGCATTCCA
TTTGGCAAGCGAAAAACAAATTAAATTAAACATTTTTGCAAATTCCGCCC
CCCAACGTCTAACTGAATCAGCGCTATTCAAGTTGTTCACGATGCAGATC
TTTGTGAAGACTCTCACGGGAAAGACTATCACTCTTGAGGTTGAATCCTC
AGATAGCATCAGCAATGTCAAGACTAAGATTCAAGATAAGGAAGGTATCC
CTCCGGATCAGCAACGACTGATCTTTGCCGGCAAGCAGCTCGAAGATGAC
CGCACTCTTTCTGATTACAACATCCAGAAGGAGTCTACTCTTCACTTGGT
TCTTCGTCTTCGTGGTGGCCTAATTGAACCTTCTCTTGCGCAACTTGCTC
GGGAAACAAACTGCGACAGGAAGATCTGTCGCAAGTGCTACGCGCGTTTG
CCGCCGCGTGCAGTCAACTGCCGCAAGAAGAAGTGTGGTCACAGCAACCA
GCTGCGCCCTAAGAAGAAGCTGAAGTAA
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