Gcaud2108.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2108.t1
Unique NameGcaud2108.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_112_length_49450_cov_4.312142contigNODE_112_length_49450_cov_4.312142:40317..40800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0185187
PFAMsGATA
Max annot lvl554915|Amoebozoa
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045595,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Evalue1.27e-06
EggNOG OGs29JJI@1|root,2RSU0@2759|Eukaryota,3XAB4@554915|Amoebozoa
Descriptionzinc finger binding to DNA consensus sequence [AT]GATA[AG]
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2108Gcaud2108Gracilaria caudata M_176_S67 malegeneNODE_112_length_49450_cov_4.312142 40317..40800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2108.t1Gcaud2108.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_112_length_49450_cov_4.312142 40317..40800 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2108.t1.start1Gcaud2108.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_112_length_49450_cov_4.312142 40317..40319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2108.t1.CDS1Gcaud2108.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_112_length_49450_cov_4.312142 40317..40404 +
Gcaud2108.t1.CDS2Gcaud2108.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_112_length_49450_cov_4.312142 40541..40800 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2108.t1.exon1Gcaud2108.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_112_length_49450_cov_4.312142 40317..40404 +
Gcaud2108.t1.exon2Gcaud2108.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_112_length_49450_cov_4.312142 40541..40800 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2108.t1.intron1Gcaud2108.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_112_length_49450_cov_4.312142 40405..40540 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2108.t1.stop1Gcaud2108.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_112_length_49450_cov_4.312142 40798..40800 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2108.t1 ID=Gcaud2108.t1|Name=Gcaud2108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MTGSSSGSSPRMCEACGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPD
SERLKPGPKRSGTAHGSGSMELSALLSPEESSRRPPRTSGITITDLLNDD
VALVAADVTARGAKQ*
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spliced messenger RNA

>Gcaud2108.t1 ID=Gcaud2108.t1|Name=Gcaud2108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:40317..40800+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGCTCTTCTAGTGGCTCGTCGCCGCGTATGTGTGAGGCGTGTGG
TCGCACTCAAACGTCACAATGGAGGTACGGTCGAAACGATAAGATGCTGC
TGTGCAACGCATGCGGCATCAAATGGAAGCGCAAGAACCCTCGTCCGGAC
AGCGAGCGATTGAAGCCCGGCCCCAAACGTTCCGGCACTGCTCACGGCTC
CGGCTCAATGGAGCTGAGCGCACTACTATCGCCCGAAGAATCTTCTCGAA
GACCGCCTCGCACATCGGGTATCACCATCACGGACCTCCTCAACGACGAC
GTTGCGCTAGTGGCGGCCGACGTCACCGCGCGTGGCGCAAAACAGTAA
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protein sequence of Gcaud2108.t1

>Gcaud2108.t1 ID=Gcaud2108.t1|Name=Gcaud2108.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MTGSSSGSSPRMCEACGRTQTSQWRYGRNDKMLLCNACGIKWKRKNPRPD
SERLKPGPKRSGTAHGSGSMELSALLSPEESSRRPPRTSGITITDLLNDD
VALVAADVTARGAKQ*
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mRNA from alignment at NODE_112_length_49450_cov_4.312142:40317..40800+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2108.t1 ID=Gcaud2108.t1|Name=Gcaud2108.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=484bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:40317..40800+ (Gracilaria caudata M_176_S67 male)
ATGACAGGCTCTTCTAGTGGCTCGTCGCCGCGTATGTGTGAGGCGTGTGG
TCGCACTCAAACGTCACAATGGAGGTACGGTCGAAACGGTAAGCTGCACT
ACAACCCCCCCCGTGCCCTTTTTCCCTCCCACGTTATCGCGCACCGCGTC
TCGCGCGGTCAACGGACAACTGACAGCGTTGGTATTGTGTACATGCCTCC
CAAACTCGCGGCTCTACGCCACAGATAAGATGCTGCTGTGCAACGCATGC
GGCATCAAATGGAAGCGCAAGAACCCTCGTCCGGACAGCGAGCGATTGAA
GCCCGGCCCCAAACGTTCCGGCACTGCTCACGGCTCCGGCTCAATGGAGC
TGAGCGCACTACTATCGCCCGAAGAATCTTCTCGAAGACCGCCTCGCACA
TCGGGTATCACCATCACGGACCTCCTCAACGACGACGTTGCGCTAGTGGC
GGCCGACGTCACCGCGCGTGGCGCAAAACAGTAA
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Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:40317..40800+

>Gcaud2108.t1 ID=Gcaud2108.t1|Name=Gcaud2108.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:40317..40800+ (Gracilaria caudata M_176_S67 male)
ATGACAGGCTCTTCTAGTGGCTCGTCGCCGCGTATGTGTGAGGCGTGTGG
TCGCACTCAAACGTCACAATGGAGGTACGGTCGAAACGATAAGATGCTGC
TGTGCAACGCATGCGGCATCAAATGGAAGCGCAAGAACCCTCGTCCGGAC
AGCGAGCGATTGAAGCCCGGCCCCAAACGTTCCGGCACTGCTCACGGCTC
CGGCTCAATGGAGCTGAGCGCACTACTATCGCCCGAAGAATCTTCTCGAA
GACCGCCTCGCACATCGGGTATCACCATCACGGACCTCCTCAACGACGAC
GTTGCGCTAGTGGCGGCCGACGTCACCGCGCGTGGCGCAAAACAGTAA
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