Gcaud2100.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2100.t1
Unique Name	Gcaud2100.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_112_length_49450_cov_4.312142	contig	NODE_112_length_49450_cov_4.312142:13967..14998 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT467CT
Preferred name	SLC35C1
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15279
KEGG TC	2.A.7.16
GOs	GO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005342,GO:0005457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006629,GO:0006810,GO:0006811,GO:0006820,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008593,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0015075,GO:0015318,GO:0015605,GO:0015711,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015780,GO:0015783,GO:0015849,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0023051,GO:0023057,GO:0030258,GO:0030259,GO:0031090,GO:0031984,GO:0034220,GO:0035436,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045746,GO:0046942,GO:0046943,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071917,GO:0089721,GO:0089722,GO:0090480,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903825,GO:1905039,GO:1990536
Evalue	7e-123
EggNOG OGs	KOG1442@1\|root,KOG1442@2759\|Eukaryota
Description	GDP-fucose import into Golgi lumen
COG category	S
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2100	Gcaud2100	Gracilaria caudata M_176_S67 male	gene	NODE_112_length_49450_cov_4.312142 13967..14998 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2100.t1.stop1	Gcaud2100.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_112_length_49450_cov_4.312142 13967..13969 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2100.t1.CDS1	Gcaud2100.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 13967..14998 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2100.t1.exon1	Gcaud2100.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 13967..14998 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2100.t1.start1	Gcaud2100.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_112_length_49450_cov_4.312142 14996..14998 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2100.t1	Gcaud2100.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_112_length_49450_cov_4.312142 13967..14998 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_112_length_49450_cov_4.312142:13967..14998-
coding sequence from alignment at NODE_112_length_49450_cov_4.312142:13967..14998-

mRNA sequence

>Gcaud2100.t1 ID=Gcaud2100.t1|Name=Gcaud2100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MSVDNANSQPLARQMSNIAMAVSFYWVISISMVFANKTLLGGQDRSSAPF
FITWSQCVVTVLFCYVAGKLRVANVPPFEVRPDILKQMLSLSFVFTSMIV
FNNLCLKYVEVSFYQVARSLTIVFNVVFDYVVLGQVTSFKAMVCCAFVVS
GFALGNVEEMRWSLIGVLFGVTSSFFVAMNSIFVKKKFALVDNNPWKITL
YNNLNASFLFLPLIFGSGEISYILTSPDVRTLNYWVLLLGSGLLGVSISF
ATAAQIKYTSPLTHNVSATAKAAAQTVIALLVYRNPISPLGFLAVLLVLT
ASLGYTLVRRAEMKKKAEEQTASKHETAKEPLTSSSEMRTEKA*

spliced messenger RNA

>Gcaud2100.t1 ID=Gcaud2100.t1|Name=Gcaud2100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:13967..14998- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTCGATAATGCCAATTCGCAGCCGCTGGCGCGCCAGATGAGCAA
CATTGCCATGGCCGTATCGTTCTACTGGGTCATTTCTATTTCCATGGTTT
TCGCGAACAAGACCCTGCTTGGCGGGCAAGATCGTTCCTCGGCACCTTTC
TTCATCACTTGGTCGCAGTGTGTGGTCACCGTTCTCTTCTGCTATGTTGC
TGGCAAGCTGCGTGTTGCTAATGTTCCGCCTTTTGAGGTGCGCCCTGACA
TTTTGAAGCAGATGCTATCTTTGTCGTTTGTGTTTACATCCATGATTGTG
TTCAACAACCTGTGCCTCAAGTATGTCGAGGTCTCTTTCTATCAGGTTGC
AAGATCCCTCACGATTGTCTTCAACGTTGTCTTTGACTACGTCGTGCTGG
GGCAGGTCACTTCCTTCAAGGCCATGGTGTGTTGTGCCTTCGTCGTGTCT
GGCTTCGCTCTTGGAAACGTGGAGGAGATGCGCTGGTCTCTCATTGGTGT
TCTCTTCGGCGTCACCTCCTCATTCTTTGTAGCCATGAACTCCATCTTCG
TCAAGAAGAAGTTCGCTCTCGTCGACAACAACCCTTGGAAAATTACTCTA
TACAACAACCTCAACGCCTCTTTCCTCTTTCTCCCACTCATCTTCGGTTC
CGGAGAGATTTCGTACATCCTCACCTCTCCCGACGTACGGACACTCAACT
ACTGGGTTCTGTTGCTCGGATCTGGGTTGCTCGGAGTCAGCATTTCGTTT
GCCACTGCTGCTCAGATTAAGTATACATCCCCCCTCACACACAACGTGTC
GGCCACTGCAAAGGCAGCTGCGCAGACCGTCATTGCTCTTCTGGTGTATA
GAAATCCTATCTCTCCTCTCGGTTTCCTTGCCGTGCTCCTCGTGCTAACA
GCGTCTTTGGGATACACTCTTGTAAGAAGAGCTGAAATGAAGAAGAAGGC
TGAAGAGCAAACCGCTTCGAAGCATGAGACCGCTAAGGAGCCTCTTACGT
CAAGTTCAGAAATGCGTACGGAGAAAGCATAA

protein sequence of Gcaud2100.t1

>Gcaud2100.t1 ID=Gcaud2100.t1|Name=Gcaud2100.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MSVDNANSQPLARQMSNIAMAVSFYWVISISMVFANKTLLGGQDRSSAPF
FITWSQCVVTVLFCYVAGKLRVANVPPFEVRPDILKQMLSLSFVFTSMIV
FNNLCLKYVEVSFYQVARSLTIVFNVVFDYVVLGQVTSFKAMVCCAFVVS
GFALGNVEEMRWSLIGVLFGVTSSFFVAMNSIFVKKKFALVDNNPWKITL
YNNLNASFLFLPLIFGSGEISYILTSPDVRTLNYWVLLLGSGLLGVSISF
ATAAQIKYTSPLTHNVSATAKAAAQTVIALLVYRNPISPLGFLAVLLVLT
ASLGYTLVRRAEMKKKAEEQTASKHETAKEPLTSSSEMRTEKA*

mRNA from alignment at NODE_112_length_49450_cov_4.312142:13967..14998-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2100.t1 ID=Gcaud2100.t1|Name=Gcaud2100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:13967..14998- (Gracilaria caudata M_176_S67 male)
ATGTCGGTCGATAATGCCAATTCGCAGCCGCTGGCGCGCCAGATGAGCAA
CATTGCCATGGCCGTATCGTTCTACTGGGTCATTTCTATTTCCATGGTTT
TCGCGAACAAGACCCTGCTTGGCGGGCAAGATCGTTCCTCGGCACCTTTC
TTCATCACTTGGTCGCAGTGTGTGGTCACCGTTCTCTTCTGCTATGTTGC
TGGCAAGCTGCGTGTTGCTAATGTTCCGCCTTTTGAGGTGCGCCCTGACA
TTTTGAAGCAGATGCTATCTTTGTCGTTTGTGTTTACATCCATGATTGTG
TTCAACAACCTGTGCCTCAAGTATGTCGAGGTCTCTTTCTATCAGGTTGC
AAGATCCCTCACGATTGTCTTCAACGTTGTCTTTGACTACGTCGTGCTGG
GGCAGGTCACTTCCTTCAAGGCCATGGTGTGTTGTGCCTTCGTCGTGTCT
GGCTTCGCTCTTGGAAACGTGGAGGAGATGCGCTGGTCTCTCATTGGTGT
TCTCTTCGGCGTCACCTCCTCATTCTTTGTAGCCATGAACTCCATCTTCG
TCAAGAAGAAGTTCGCTCTCGTCGACAACAACCCTTGGAAAATTACTCTA
TACAACAACCTCAACGCCTCTTTCCTCTTTCTCCCACTCATCTTCGGTTC
CGGAGAGATTTCGTACATCCTCACCTCTCCCGACGTACGGACACTCAACT
ACTGGGTTCTGTTGCTCGGATCTGGGTTGCTCGGAGTCAGCATTTCGTTT
GCCACTGCTGCTCAGATTAAGTATACATCCCCCCTCACACACAACGTGTC
GGCCACTGCAAAGGCAGCTGCGCAGACCGTCATTGCTCTTCTGGTGTATA
GAAATCCTATCTCTCCTCTCGGTTTCCTTGCCGTGCTCCTCGTGCTAACA
GCGTCTTTGGGATACACTCTTGTAAGAAGAGCTGAAATGAAGAAGAAGGC
TGAAGAGCAAACCGCTTCGAAGCATGAGACCGCTAAGGAGCCTCTTACGT
CAAGTTCAGAAATGCGTACGGAGAAAGCATAA

Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:13967..14998-

>Gcaud2100.t1 ID=Gcaud2100.t1|Name=Gcaud2100.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:13967..14998- (Gracilaria caudata M_176_S67 male)
ATGTCGGTCGATAATGCCAATTCGCAGCCGCTGGCGCGCCAGATGAGCAA
CATTGCCATGGCCGTATCGTTCTACTGGGTCATTTCTATTTCCATGGTTT
TCGCGAACAAGACCCTGCTTGGCGGGCAAGATCGTTCCTCGGCACCTTTC
TTCATCACTTGGTCGCAGTGTGTGGTCACCGTTCTCTTCTGCTATGTTGC
TGGCAAGCTGCGTGTTGCTAATGTTCCGCCTTTTGAGGTGCGCCCTGACA
TTTTGAAGCAGATGCTATCTTTGTCGTTTGTGTTTACATCCATGATTGTG
TTCAACAACCTGTGCCTCAAGTATGTCGAGGTCTCTTTCTATCAGGTTGC
AAGATCCCTCACGATTGTCTTCAACGTTGTCTTTGACTACGTCGTGCTGG
GGCAGGTCACTTCCTTCAAGGCCATGGTGTGTTGTGCCTTCGTCGTGTCT
GGCTTCGCTCTTGGAAACGTGGAGGAGATGCGCTGGTCTCTCATTGGTGT
TCTCTTCGGCGTCACCTCCTCATTCTTTGTAGCCATGAACTCCATCTTCG
TCAAGAAGAAGTTCGCTCTCGTCGACAACAACCCTTGGAAAATTACTCTA
TACAACAACCTCAACGCCTCTTTCCTCTTTCTCCCACTCATCTTCGGTTC
CGGAGAGATTTCGTACATCCTCACCTCTCCCGACGTACGGACACTCAACT
ACTGGGTTCTGTTGCTCGGATCTGGGTTGCTCGGAGTCAGCATTTCGTTT
GCCACTGCTGCTCAGATTAAGTATACATCCCCCCTCACACACAACGTGTC
GGCCACTGCAAAGGCAGCTGCGCAGACCGTCATTGCTCTTCTGGTGTATA
GAAATCCTATCTCTCCTCTCGGTTTCCTTGCCGTGCTCCTCGTGCTAACA
GCGTCTTTGGGATACACTCTTGTAAGAAGAGCTGAAATGAAGAAGAAGGC
TGAAGAGCAAACCGCTTCGAAGCATGAGACCGCTAAGGAGCCTCTTACGT
CAAGTTCAGAAATGCGTACGGAGAAAGCATAA